Genome-Wide Analysis of Citrus R2R3MYB Genes and Their Spatiotemporal Expression under Stresses and Hormone Treatments
Identifieur interne : 000A67 ( Main/Merge ); précédent : 000A66; suivant : 000A68Genome-Wide Analysis of Citrus R2R3MYB Genes and Their Spatiotemporal Expression under Stresses and Hormone Treatments
Auteurs : Rangjin Xie ; Yongjie Li ; Shaolan He ; Yongqiang Zheng ; Shilai Yi ; Qiang Lv ; Lie DengSource :
- PLoS ONE [ 1932-6203 ] ; 2014.
Abstract
The R2R3MYB proteins represent one of the largest families of transcription factors, which play important roles in plant growth and development. Although genome-wide analysis of this family has been conducted in many species, little is known about
Url:
DOI: 10.1371/journal.pone.0113971
PubMed: 25473954
PubMed Central: 4256393
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-Wide Analysis of Citrus <italic>R2R3MYB</italic> Genes and Their Spatiotemporal Expression under Stresses and Hormone Treatments</title><author><name sortKey="Xie, Rangjin" sort="Xie, Rangjin" uniqKey="Xie R" first="Rangjin" last="Xie">Rangjin Xie</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Li, Yongjie" sort="Li, Yongjie" uniqKey="Li Y" first="Yongjie" last="Li">Yongjie Li</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="He, Shaolan" sort="He, Shaolan" uniqKey="He S" first="Shaolan" last="He">Shaolan He</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zheng, Yongqiang" sort="Zheng, Yongqiang" uniqKey="Zheng Y" first="Yongqiang" last="Zheng">Yongqiang Zheng</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Yi, Shilai" sort="Yi, Shilai" uniqKey="Yi S" first="Shilai" last="Yi">Shilai Yi</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Lv, Qiang" sort="Lv, Qiang" uniqKey="Lv Q" first="Qiang" last="Lv">Qiang Lv</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Deng, Lie" sort="Deng, Lie" uniqKey="Deng L" first="Lie" last="Deng">Lie Deng</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25473954</idno><idno type="pmc">4256393</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256393</idno><idno type="RBID">PMC:4256393</idno><idno type="doi">10.1371/journal.pone.0113971</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000225</idno><idno type="wicri:Area/Pmc/Curation">000225</idno><idno type="wicri:Area/Pmc/Checkpoint">000809</idno><idno type="wicri:Area/Ncbi/Merge">001933</idno><idno type="wicri:Area/Ncbi/Curation">001933</idno><idno type="wicri:Area/Ncbi/Checkpoint">001933</idno><idno type="wicri:Area/Main/Merge">000A67</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome-Wide Analysis of Citrus <italic>R2R3MYB</italic> Genes and Their Spatiotemporal Expression under Stresses and Hormone Treatments</title><author><name sortKey="Xie, Rangjin" sort="Xie, Rangjin" uniqKey="Xie R" first="Rangjin" last="Xie">Rangjin Xie</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Li, Yongjie" sort="Li, Yongjie" uniqKey="Li Y" first="Yongjie" last="Li">Yongjie Li</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="He, Shaolan" sort="He, Shaolan" uniqKey="He S" first="Shaolan" last="He">Shaolan He</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zheng, Yongqiang" sort="Zheng, Yongqiang" uniqKey="Zheng Y" first="Yongqiang" last="Zheng">Yongqiang Zheng</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Yi, Shilai" sort="Yi, Shilai" uniqKey="Yi S" first="Shilai" last="Yi">Shilai Yi</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Lv, Qiang" sort="Lv, Qiang" uniqKey="Lv Q" first="Qiang" last="Lv">Qiang Lv</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Deng, Lie" sort="Deng, Lie" uniqKey="Deng L" first="Lie" last="Deng">Lie Deng</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The R2R3MYB proteins represent one of the largest families of transcription factors, which play important roles in plant growth and development. Although genome-wide analysis of this family has been conducted in many species, little is known about <italic>R2R3MYB</italic> genes in citrus, In this study, 101 <italic>R2R3MYB</italic> genes has been identified in the citrus (<italic>Citrus sinesis</italic> and <italic>Citrus clementina</italic>) genomes, which are almost equal to the number of rice. Phylogenetic analysis revealed that they could be subdivided into 21 subgroups. The evolutionary relationships and the intro-exon organizations were also analyzed, revealing strong gene conservation but also the expansions of particular functional genes during the plant evolution. Tissue-specific expression profiles showed that 95 citrus <italic>R2R3MYB</italic> genes were expressed in at least one tissue and the other 6 genes showed very low expression in all tissues tested, suggesting that citrus <italic>R2R3MYB</italic> genes play important roles in the development of all citrus organs. The transcript abundance level analysis during abiotic conditions (NaCl, abscisic acid, jasmonic acid, drought and low temperature) identified a group of <italic>R2R3MYB</italic> genes that responded to one or multiple treatments, which showed a promising for improving citrus adaptation to stresses. Our results provided an essential foundation for the future selection of the citrus <italic>R2R3MYB</italic> genes for cloning and functional dissection with an aim of uncovering their roles in citrus growth and development.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Dubos, C" uniqKey="Dubos C">C Dubos</name></author><author><name sortKey="Stracke, R" uniqKey="Stracke R">R Stracke</name></author><author><name sortKey="Grotewold, E" uniqKey="Grotewold E">E Grotewold</name></author><author><name sortKey="Weisshaar, B" uniqKey="Weisshaar B">B Weisshaar</name></author><author><name sortKey="Martin, C" uniqKey="Martin C">C Martin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Li, Q" uniqKey="Li Q">Q Li</name></author><author><name sortKey="Zhang, C" uniqKey="Zhang C">C Zhang</name></author><author><name sortKey="Li, J" uniqKey="Li J">J Li</name></author><author><name sortKey="Wang, L" 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