Genome-Wide Analysis of Citrus R2R3MYB Genes and Their Spatiotemporal Expression under Stresses and Hormone Treatments
Identifieur interne : 001933 ( Ncbi/Merge ); précédent : 001932; suivant : 001934Genome-Wide Analysis of Citrus R2R3MYB Genes and Their Spatiotemporal Expression under Stresses and Hormone Treatments
Auteurs : Rangjin Xie ; Yongjie Li ; Shaolan He ; Yongqiang Zheng ; Shilai Yi ; Qiang Lv ; Lie DengSource :
- PLoS ONE [ 1932-6203 ] ; 2014.
Abstract
The R2R3MYB proteins represent one of the largest families of transcription factors, which play important roles in plant growth and development. Although genome-wide analysis of this family has been conducted in many species, little is known about
Url:
DOI: 10.1371/journal.pone.0113971
PubMed: 25473954
PubMed Central: 4256393
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-Wide Analysis of Citrus <italic>R2R3MYB</italic> Genes and Their Spatiotemporal Expression under Stresses and Hormone Treatments</title><author><name sortKey="Xie, Rangjin" sort="Xie, Rangjin" uniqKey="Xie R" first="Rangjin" last="Xie">Rangjin Xie</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Li, Yongjie" sort="Li, Yongjie" uniqKey="Li Y" first="Yongjie" last="Li">Yongjie Li</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="He, Shaolan" sort="He, Shaolan" uniqKey="He S" first="Shaolan" last="He">Shaolan He</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zheng, Yongqiang" sort="Zheng, Yongqiang" uniqKey="Zheng Y" first="Yongqiang" last="Zheng">Yongqiang Zheng</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Yi, Shilai" sort="Yi, Shilai" uniqKey="Yi S" first="Shilai" last="Yi">Shilai Yi</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Lv, Qiang" sort="Lv, Qiang" uniqKey="Lv Q" first="Qiang" last="Lv">Qiang Lv</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Deng, Lie" sort="Deng, Lie" uniqKey="Deng L" first="Lie" last="Deng">Lie Deng</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25473954</idno><idno type="pmc">4256393</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256393</idno><idno type="RBID">PMC:4256393</idno><idno type="doi">10.1371/journal.pone.0113971</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000225</idno><idno type="wicri:Area/Pmc/Curation">000225</idno><idno type="wicri:Area/Pmc/Checkpoint">000809</idno><idno type="wicri:Area/Ncbi/Merge">001933</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome-Wide Analysis of Citrus <italic>R2R3MYB</italic> Genes and Their Spatiotemporal Expression under Stresses and Hormone Treatments</title><author><name sortKey="Xie, Rangjin" sort="Xie, Rangjin" uniqKey="Xie R" first="Rangjin" last="Xie">Rangjin Xie</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Li, Yongjie" sort="Li, Yongjie" uniqKey="Li Y" first="Yongjie" last="Li">Yongjie Li</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="He, Shaolan" sort="He, Shaolan" uniqKey="He S" first="Shaolan" last="He">Shaolan He</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zheng, Yongqiang" sort="Zheng, Yongqiang" uniqKey="Zheng Y" first="Yongqiang" last="Zheng">Yongqiang Zheng</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Yi, Shilai" sort="Yi, Shilai" uniqKey="Yi S" first="Shilai" last="Yi">Shilai Yi</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Lv, Qiang" sort="Lv, Qiang" uniqKey="Lv Q" first="Qiang" last="Lv">Qiang Lv</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Deng, Lie" sort="Deng, Lie" uniqKey="Deng L" first="Lie" last="Deng">Lie Deng</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The R2R3MYB proteins represent one of the largest families of transcription factors, which play important roles in plant growth and development. Although genome-wide analysis of this family has been conducted in many species, little is known about <italic>R2R3MYB</italic> genes in citrus, In this study, 101 <italic>R2R3MYB</italic> genes has been identified in the citrus (<italic>Citrus sinesis</italic> and <italic>Citrus clementina</italic>) genomes, which are almost equal to the number of rice. Phylogenetic analysis revealed that they could be subdivided into 21 subgroups. The evolutionary relationships and the intro-exon organizations were also analyzed, revealing strong gene conservation but also the expansions of particular functional genes during the plant evolution. Tissue-specific expression profiles showed that 95 citrus <italic>R2R3MYB</italic> genes were expressed in at least one tissue and the other 6 genes showed very low expression in all tissues tested, suggesting that citrus <italic>R2R3MYB</italic> genes play important roles in the development of all citrus organs. The transcript abundance level analysis during abiotic conditions (NaCl, abscisic acid, jasmonic acid, drought and low temperature) identified a group of <italic>R2R3MYB</italic> genes that responded to one or multiple treatments, which showed a promising for improving citrus adaptation to stresses. Our results provided an essential foundation for the future selection of the citrus <italic>R2R3MYB</italic> genes for cloning and functional dissection with an aim of uncovering their roles in citrus growth and development.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Dubos, C" uniqKey="Dubos C">C Dubos</name></author><author><name sortKey="Stracke, R" uniqKey="Stracke R">R Stracke</name></author><author><name sortKey="Grotewold, E" uniqKey="Grotewold E">E Grotewold</name></author><author><name sortKey="Weisshaar, B" uniqKey="Weisshaar B">B Weisshaar</name></author><author><name sortKey="Martin, C" uniqKey="Martin C">C Martin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Li, Q" uniqKey="Li Q">Q Li</name></author><author><name sortKey="Zhang, C" uniqKey="Zhang C">C Zhang</name></author><author><name sortKey="Li, J" uniqKey="Li J">J Li</name></author><author><name sortKey="Wang, L" uniqKey="Wang L">L Wang</name></author><author><name sortKey="Ren, Z" uniqKey="Ren Z">Z Ren</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Du, H" uniqKey="Du H">H Du</name></author><author><name sortKey="Yang, Ss" uniqKey="Yang S">SS Yang</name></author><author><name sortKey="Liang, Z" uniqKey="Liang Z">Z Liang</name></author><author><name sortKey="Feng, Br" uniqKey="Feng B">BR Feng</name></author><author><name sortKey="Liu, L" uniqKey="Liu L">L Liu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Du, H" uniqKey="Du H">H Du</name></author><author><name sortKey="Feng, Br" uniqKey="Feng B">BR Feng</name></author><author><name sortKey="Yang, Ss" uniqKey="Yang S">SS Yang</name></author><author><name sortKey="Huang, Yb" uniqKey="Huang Y">YB Huang</name></author><author><name sortKey="Tang, Yx" uniqKey="Tang Y">YX Tang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chen, Yh" uniqKey="Chen Y">YH Chen</name></author><author><name sortKey="Yang, Xy" uniqKey="Yang X">XY Yang</name></author><author><name sortKey="Kun, H" uniqKey="Kun H">H Kun</name></author><author><name sortKey="Liu, Mh" uniqKey="Liu M">MH Liu</name></author><author><name sortKey="Li, Jg" uniqKey="Li J">JG Li</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Matus, Jt" uniqKey="Matus J">JT Matus</name></author><author><name sortKey="Aquea, F" uniqKey="Aquea F">F Aquea</name></author><author><name sortKey="Arce Johnson, P" uniqKey="Arce Johnson P">P Arce-Johnson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wilkins, O" uniqKey="Wilkins O">O Wilkins</name></author><author><name sortKey="Nahal, H" uniqKey="Nahal H">H Nahal</name></author><author><name sortKey="Foong, J" uniqKey="Foong J">J Foong</name></author><author><name sortKey="Provart, Nj" uniqKey="Provart N">NJ Provart</name></author><author><name sortKey="Campbell, Mm" uniqKey="Campbell M">MM Campbell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Oppenheimer, Dg" uniqKey="Oppenheimer D">DG Oppenheimer</name></author><author><name sortKey="Herman, Pl" uniqKey="Herman P">PL Herman</name></author><author><name sortKey="Sivakumaran, S" uniqKey="Sivakumaran S">S Sivakumaran</name></author><author><name sortKey="Esch, J" uniqKey="Esch J">J Esch</name></author><author><name sortKey="Marks, Md" uniqKey="Marks M">MD Marks</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Brownfield, L" uniqKey="Brownfield L">L Brownfield</name></author><author><name sortKey="Hafidh, S" uniqKey="Hafidh S">S Hafidh</name></author><author><name sortKey="Borg, M" uniqKey="Borg M">M Borg</name></author><author><name sortKey="Sidorova, A" uniqKey="Sidorova A">A Sidorova</name></author><author><name sortKey="Mori, T" uniqKey="Mori T">T Mori</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Millar, Aa" uniqKey="Millar A">AA Millar</name></author><author><name sortKey="Gubler, F" uniqKey="Gubler F">F Gubler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Keller, T" uniqKey="Keller T">T Keller</name></author><author><name sortKey="Abbott, J" uniqKey="Abbott J">J Abbott</name></author><author><name sortKey="Moritz, T" uniqKey="Moritz T">T Moritz</name></author><author><name sortKey="Doerner, P" uniqKey="Doerner P">P Doerner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mehrtens, F" uniqKey="Mehrtens F">F Mehrtens</name></author><author><name sortKey="Kranz, H" uniqKey="Kranz H">H Kranz</name></author><author><name sortKey="Bednarek, P" uniqKey="Bednarek P">P Bednarek</name></author><author><name sortKey="Weisshaar, B" uniqKey="Weisshaar B">B Weisshaar</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Teng, S" uniqKey="Teng S">S Teng</name></author><author><name sortKey="Keurentjes, J" uniqKey="Keurentjes J">J Keurentjes</name></author><author><name sortKey="Bentsink, L" uniqKey="Bentsink L">L Bentsink</name></author><author><name sortKey="Koornneef, M" uniqKey="Koornneef M">M Koornneef</name></author><author><name sortKey="Smeekens, S" uniqKey="Smeekens S">S Smeekens</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bedon, F" uniqKey="Bedon F">F Bedon</name></author><author><name sortKey="Grima Pettenati, J" uniqKey="Grima Pettenati J">J Grima-Pettenati</name></author><author><name sortKey="Mackay, J" uniqKey="Mackay J">J Mackay</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Oh, Je" uniqKey="Oh J">JE Oh</name></author><author><name sortKey="Kwon, Y" uniqKey="Kwon Y">Y Kwon</name></author><author><name sortKey="Kim, Jh" uniqKey="Kim J">JH Kim</name></author><author><name sortKey="Noh, H" uniqKey="Noh H">H Noh</name></author><author><name sortKey="Hong, Sw" uniqKey="Hong S">SW Hong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cominelli, E" uniqKey="Cominelli E">E Cominelli</name></author><author><name sortKey="Galbiati, M" uniqKey="Galbiati M">M Galbiati</name></author><author><name sortKey="Vavasseur, A" uniqKey="Vavasseur A">A Vavasseur</name></author><author><name sortKey="Conti, L" uniqKey="Conti L">L Conti</name></author><author><name sortKey="Sala, T" uniqKey="Sala T">T Sala</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="He, Yn" uniqKey="He Y">YN He</name></author><author><name sortKey="Li, W" uniqKey="Li W">W Li</name></author><author><name sortKey="Lv, J" uniqKey="Lv J">J Lv</name></author><author><name sortKey="Jia, Yb" uniqKey="Jia Y">YB Jia</name></author><author><name sortKey="Wang, Mc" uniqKey="Wang M">MC Wang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cominelli, E" uniqKey="Cominelli E">E Cominelli</name></author><author><name sortKey="Galbiati, M" uniqKey="Galbiati M">M Galbiati</name></author><author><name sortKey="Vavasseur, A" uniqKey="Vavasseur A">A Vavasseur</name></author><author><name sortKey="Conti, L" uniqKey="Conti L">L Conti</name></author><author><name sortKey="Sala, T" uniqKey="Sala T">T Sala</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Seo, Pj" uniqKey="Seo P">PJ Seo</name></author><author><name sortKey="Xiang, Fn" uniqKey="Xiang F">FN Xiang</name></author><author><name sortKey="Qiao, M" uniqKey="Qiao M">M Qiao</name></author><author><name sortKey="Park, Jy" uniqKey="Park J">JY Park</name></author><author><name sortKey="Lee, Yn" uniqKey="Lee Y">YN Lee</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Abe, H" uniqKey="Abe H">H Abe</name></author><author><name sortKey="Urao, T" uniqKey="Urao T">T Urao</name></author><author><name sortKey="Ito, T" uniqKey="Ito T">T Ito</name></author><author><name sortKey="Seki, M" uniqKey="Seki M">M Seki</name></author><author><name sortKey="Shinozaki, K" uniqKey="Shinozaki K">K Shinozaki</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gocal, Gf" uniqKey="Gocal G">GF Gocal</name></author><author><name sortKey="Sheldon, Cc" uniqKey="Sheldon C">CC Sheldon</name></author><author><name sortKey="Gubler, F" uniqKey="Gubler F">F Gubler</name></author><author><name sortKey="Moritz, T" uniqKey="Moritz T">T Moritz</name></author><author><name sortKey="Bagnall, Dj" uniqKey="Bagnall D">DJ Bagnall</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Li, Jg" uniqKey="Li J">JG Li</name></author><author><name sortKey="Li, Xj" uniqKey="Li X">XJ Li</name></author><author><name sortKey="Guo, L" uniqKey="Guo L">L Guo</name></author><author><name sortKey="Lu, F" uniqKey="Lu F">F Lu</name></author><author><name sortKey="Feng, Xj" uniqKey="Feng X">XJ Feng</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jung, C" uniqKey="Jung C">C Jung</name></author><author><name sortKey="Seo, Js" uniqKey="Seo J">JS Seo</name></author><author><name sortKey="Han, Sw" uniqKey="Han S">SW Han</name></author><author><name sortKey="Koo, Yj" uniqKey="Koo Y">YJ Koo</name></author><author><name sortKey="Kim, Ch" uniqKey="Kim C">CH Kim</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hartmann, U" uniqKey="Hartmann U">U Hartmann</name></author><author><name sortKey="Sagasser, M" uniqKey="Sagasser M">M Sagasser</name></author><author><name sortKey="Mehrtens, F" uniqKey="Mehrtens F">F Mehrtens</name></author><author><name sortKey="Stracke, R" uniqKey="Stracke R">R Stracke</name></author><author><name sortKey="Weisshaar, B" uniqKey="Weisshaar B">B Weisshaar</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Devaiah, Bn" uniqKey="Devaiah B">BN Devaiah</name></author><author><name sortKey="Madhuvanthi, R" uniqKey="Madhuvanthi R">R Madhuvanthi</name></author><author><name sortKey="Karthikeyan, As" uniqKey="Karthikeyan A">AS Karthikeyan</name></author><author><name sortKey="Raghothama, Kg" uniqKey="Raghothama K">KG Raghothama</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cultrone, A" uniqKey="Cultrone A">A Cultrone</name></author><author><name sortKey="Cotroneo, Ps" uniqKey="Cotroneo P">PS Cotroneo</name></author><author><name sortKey="Recupero, Gr" uniqKey="Recupero G">GR Recupero</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Butelli, E" uniqKey="Butelli E">E Butelli</name></author><author><name sortKey="Licciardello, C" uniqKey="Licciardello C">C Licciardello</name></author><author><name sortKey="Zhang, Y" uniqKey="Zhang Y">Y Zhang</name></author><author><name sortKey="Liu, Jj" uniqKey="Liu J">JJ Liu</name></author><author><name sortKey="Mackay, S" uniqKey="Mackay S">S Mackay</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Apweiler, R" uniqKey="Apweiler R">R Apweiler</name></author><author><name sortKey="Attwood, Tk" uniqKey="Attwood T">TK Attwood</name></author><author><name sortKey="Bairoch, A" uniqKey="Bairoch A">A Bairoch</name></author><author><name sortKey="Bateman, A" uniqKey="Bateman A">A Bateman</name></author><author><name sortKey="Birney, E" uniqKey="Birney E">E Birney</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Letunic, I" uniqKey="Letunic I">I Letunic</name></author><author><name sortKey="Copley, Rr" uniqKey="Copley R">RR Copley</name></author><author><name sortKey="Schmidt, S" uniqKey="Schmidt S">S Schmidt</name></author><author><name sortKey="Ciccarelli, Fd" uniqKey="Ciccarelli F">FD Ciccarelli</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stracke, R" uniqKey="Stracke R">R Stracke</name></author><author><name sortKey="Werber, M" uniqKey="Werber M">M Werber</name></author><author><name sortKey="Weisshaar, B" uniqKey="Weisshaar B">B Weisshaar</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Larkin, Ma" uniqKey="Larkin M">MA Larkin</name></author><author><name sortKey="Blackshields, G" uniqKey="Blackshields G">G Blackshields</name></author><author><name sortKey="Brown, Np" uniqKey="Brown N">NP Brown</name></author><author><name sortKey="Chenna, R" uniqKey="Chenna R">R Chenna</name></author><author><name sortKey="Mcgettigan, Pa" uniqKey="Mcgettigan P">PA McGettigan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nicholas, Kb" uniqKey="Nicholas K">KB Nicholas</name></author><author><name sortKey="Nicholas, Hbj" uniqKey="Nicholas H">HBJ Nicholas</name></author><author><name sortKey="Deerfield, Dwi" uniqKey="Deerfield D">DWI Deerfield</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mafra, V" uniqKey="Mafra V">V Mafra</name></author><author><name sortKey="Kubo, Ks" uniqKey="Kubo K">KS Kubo</name></author><author><name sortKey="Alves Ferreira, M" uniqKey="Alves Ferreira M">M Alves-Ferreira</name></author><author><name sortKey="Ribeiro Alves, M" uniqKey="Ribeiro Alves M">M Ribeiro-Alves</name></author><author><name sortKey="Stuart, Rm" uniqKey="Stuart R">RM Stuart</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Livak, K" uniqKey="Livak K">K Livak</name></author><author><name sortKey="Schmittgen, Td" uniqKey="Schmittgen T">TD Schmittgen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhang, Lc" uniqKey="Zhang L">LC Zhang</name></author><author><name sortKey="Zhao, Gy" uniqKey="Zhao G">GY Zhao</name></author><author><name sortKey="Xia, C" uniqKey="Xia C">C Xia</name></author><author><name sortKey="Jia, Jz" uniqKey="Jia J">JZ Jia</name></author><author><name sortKey="Liu, X" uniqKey="Liu X">X Liu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhang, Lc" uniqKey="Zhang L">LC Zhang</name></author><author><name sortKey="Zhao, Gy" uniqKey="Zhao G">GY Zhao</name></author><author><name sortKey="Jia, Jz" uniqKey="Jia J">JZ Jia</name></author><author><name sortKey="Liu, X" uniqKey="Liu X">X Liu</name></author><author><name sortKey="Kong, Xy" uniqKey="Kong X">XY Kong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Feng, S" uniqKey="Feng S">S Feng</name></author><author><name sortKey="Wang, Y" uniqKey="Wang Y">Y Wang</name></author><author><name sortKey="Yang, S" uniqKey="Yang S">S Yang</name></author><author><name sortKey="Xu, Y" uniqKey="Xu Y">Y Xu</name></author><author><name sortKey="Chen, X" uniqKey="Chen X">X Chen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chagne, D" uniqKey="Chagne D">D Chagné</name></author><author><name sortKey="Carlisle, Cm" uniqKey="Carlisle C">CM Carlisle</name></author><author><name sortKey="Blond, C" uniqKey="Blond C">C Blond</name></author><author><name sortKey="Volz, Rk" uniqKey="Volz R">RK Volz</name></author><author><name sortKey="Whitworth, Cj" uniqKey="Whitworth C">CJ Whitworth</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huang, Za" uniqKey="Huang Z">ZA Huang</name></author><author><name sortKey="Zhao, T" uniqKey="Zhao T">T Zhao</name></author><author><name sortKey="Fan, Hj" uniqKey="Fan H">HJ Fan</name></author><author><name sortKey="Wang, N" uniqKey="Wang N">N Wang</name></author><author><name sortKey="Zheng, Ss" uniqKey="Zheng S">SS Zheng</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Luo, J" uniqKey="Luo J">J Luo</name></author><author><name sortKey="Butelli, E" uniqKey="Butelli E">E Butelli</name></author><author><name sortKey="Hill, L" uniqKey="Hill L">L Hill</name></author><author><name sortKey="Parr, A" uniqKey="Parr A">A Parr</name></author><author><name sortKey="Niggeweg, R" uniqKey="Niggeweg R">R Niggeweg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Czemmel, S" uniqKey="Czemmel S">S Czemmel</name></author><author><name sortKey="Stracke, R" uniqKey="Stracke R">R Stracke</name></author><author><name sortKey="Weisshaar, B" uniqKey="Weisshaar B">B Weisshaar</name></author><author><name sortKey="Cordon, N" uniqKey="Cordon N">N Cordon</name></author><author><name sortKey="Harris, Nn" uniqKey="Harris N">NN Harris</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fornale, S" uniqKey="Fornale S">S Fornalé</name></author><author><name sortKey="Lopez, E" uniqKey="Lopez E">E Lopez</name></author><author><name sortKey="Salazar Henao, Je" uniqKey="Salazar Henao J">JE Salazar-Henao</name></author><author><name sortKey="Fernandez Nohales, P" uniqKey="Fernandez Nohales P">P Fernández-Nohales</name></author><author><name sortKey="Rigau, J" uniqKey="Rigau J">J Rigau</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Omer, S" uniqKey="Omer S">S Omer</name></author><author><name sortKey="Kumar, S" uniqKey="Kumar S">S Kumar</name></author><author><name sortKey="Khan, Bm" uniqKey="Khan B">BM Khan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhu, L" uniqKey="Zhu L">L Zhu</name></author><author><name sortKey="Shan, H" uniqKey="Shan H">H Shan</name></author><author><name sortKey="Chen, S" uniqKey="Chen S">S Chen</name></author><author><name sortKey="Jiang, J" uniqKey="Jiang J">J Jiang</name></author><author><name sortKey="Gu, C" uniqKey="Gu C">C Gu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jin, H" uniqKey="Jin H">H Jin</name></author><author><name sortKey="Cominelli, E" uniqKey="Cominelli E">E Cominelli</name></author><author><name sortKey="Bailey, P" uniqKey="Bailey P">P Bailey</name></author><author><name sortKey="Parr, A" uniqKey="Parr A">A Parr</name></author><author><name sortKey="Mehrtens, F" uniqKey="Mehrtens F">F Mehrtens</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Katiyar, A" uniqKey="Katiyar A">A Katiyar</name></author><author><name sortKey="Smita, S" uniqKey="Smita S">S Smita</name></author><author><name sortKey="Lenka, Sk" uniqKey="Lenka S">SK Lenka</name></author><author><name sortKey="Rajwanshi, R" uniqKey="Rajwanshi R">R Rajwanshi</name></author><author><name sortKey="Chinnusamy, V" uniqKey="Chinnusamy V">V Chinnusamy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Baumann, K" uniqKey="Baumann K">K Baumann</name></author><author><name sortKey="Perez Rodriguez, M" uniqKey="Perez Rodriguez M">M Perez-Rodriguez</name></author><author><name sortKey="Bradley, D" uniqKey="Bradley D">D Bradley</name></author><author><name sortKey="Venail, J" uniqKey="Venail J">J Venail</name></author><author><name sortKey="Bailey, P" uniqKey="Bailey P">P Bailey</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jakoby, Mj" uniqKey="Jakoby M">MJ Jakoby</name></author><author><name sortKey="Falkenhan, D" uniqKey="Falkenhan D">D Falkenhan</name></author><author><name sortKey="Mader, Mt" uniqKey="Mader M">MT Mader</name></author><author><name sortKey="Brininstool, G" uniqKey="Brininstool G">G Brininstool</name></author><author><name sortKey="Wischnitzki, E" uniqKey="Wischnitzki E">E Wischnitzki</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Borg, M" uniqKey="Borg M">M Borg</name></author><author><name sortKey="Brownfield, L" uniqKey="Brownfield L">L Brownfield</name></author><author><name sortKey="Khatab, H" uniqKey="Khatab H">H Khatab</name></author><author><name sortKey="Sidorova, A" uniqKey="Sidorova A">A Sidorova</name></author><author><name sortKey="Lingaya, M" uniqKey="Lingaya M">M Lingaya</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cominelli, E" uniqKey="Cominelli E">E Cominelli</name></author><author><name sortKey="Sala, T" uniqKey="Sala T">T Sala</name></author><author><name sortKey="Calvi, D" uniqKey="Calvi D">D Calvi</name></author><author><name sortKey="Gusmaroli, G" uniqKey="Gusmaroli G">G Gusmaroli</name></author><author><name sortKey="Tonelli, C" uniqKey="Tonelli C">C Tonelli</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vos, Md" uniqKey="Vos M">MD Vos</name></author><author><name sortKey="Denekamp, M" uniqKey="Denekamp M">M Denekamp</name></author><author><name sortKey="Dicke, M" uniqKey="Dicke M">M Dicke</name></author><author><name sortKey="Vuylsteke, M" uniqKey="Vuylsteke M">M Vuylsteke</name></author><author><name sortKey="Loon, Lv" uniqKey="Loon L">LV Loon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shan, H" uniqKey="Shan H">H Shan</name></author><author><name sortKey="Chen, S" uniqKey="Chen S">S Chen</name></author><author><name sortKey="Jiang, J" uniqKey="Jiang J">J Jiang</name></author><author><name sortKey="Chen, F" uniqKey="Chen F">F Chen</name></author><author><name sortKey="Chen, Y" uniqKey="Chen Y">Y Chen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zou, Bh" uniqKey="Zou B">BH Zou</name></author><author><name sortKey="Jia, Zh" uniqKey="Jia Z">ZH Jia</name></author><author><name sortKey="Tian, Sm" uniqKey="Tian S">SM Tian</name></author><author><name sortKey="Wang, Xm" uniqKey="Wang X">XM Wang</name></author><author><name sortKey="Gou, Zh" uniqKey="Gou Z">ZH Gou</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Jung, C" uniqKey="Jung C">C Jung</name></author><author><name sortKey="Seo, Js" uniqKey="Seo J">JS Seo</name></author><author><name sortKey="Han, Sw" uniqKey="Han S">SW Han</name></author><author><name sortKey="Koo, Yj" uniqKey="Koo Y">YJ Koo</name></author><author><name sortKey="Kim, Ch" uniqKey="Kim C">CH Kim</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id><journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group><journal-title>PLoS ONE</journal-title></journal-title-group><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">25473954</article-id><article-id pub-id-type="pmc">4256393</article-id><article-id pub-id-type="publisher-id">PONE-D-14-35634</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0113971</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biology and Life Sciences</subject><subj-group><subject>Agriculture</subject><subj-group><subject>Agricultural Biotechnology</subject></subj-group></subj-group><subj-group><subject>Biotechnology</subject><subj-group><subject>Plant Biotechnology</subject></subj-group></subj-group><subj-group><subject>Developmental Biology</subject><subj-group><subject>Plant Growth and Development</subject></subj-group></subj-group><subj-group><subject>Plant Science</subject><subj-group><subject>Plant Physiology</subject></subj-group></subj-group></subj-group></article-categories><title-group><article-title>Genome-Wide Analysis of Citrus <italic>R2R3MYB</italic> Genes and Their Spatiotemporal Expression under Stresses and Hormone Treatments</article-title><alt-title alt-title-type="running-head">Analysis of the Citrus <italic>R2R3MYB</italic> Genes</alt-title></title-group><contrib-group><contrib contrib-type="author" equal-contrib="yes"><name><surname>Xie</surname><given-names>Rangjin</given-names></name><xref ref-type="aff" rid="aff1"></xref></contrib><contrib contrib-type="author" equal-contrib="yes"><name><surname>Li</surname><given-names>Yongjie</given-names></name><xref ref-type="aff" rid="aff1"></xref></contrib><contrib contrib-type="author"><name><surname>He</surname><given-names>Shaolan</given-names></name><xref ref-type="aff" rid="aff1"></xref></contrib><contrib contrib-type="author"><name><surname>Zheng</surname><given-names>Yongqiang</given-names></name><xref ref-type="aff" rid="aff1"></xref></contrib><contrib contrib-type="author"><name><surname>Yi</surname><given-names>Shilai</given-names></name><xref ref-type="aff" rid="aff1"></xref></contrib><contrib contrib-type="author"><name><surname>Lv</surname><given-names>Qiang</given-names></name><xref ref-type="aff" rid="aff1"></xref></contrib><contrib contrib-type="author"><name><surname>Deng</surname><given-names>Lie</given-names></name><xref ref-type="aff" rid="aff1"></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff id="aff1"><addr-line>Citrus Research Institute, Chinese Academy of Agricultural Science, Southwest University, Chongqing, China</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Margis</surname><given-names>Rogerio</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1"><addr-line>Universidade Federal do Rio Grande do Sul, Brazil</addr-line></aff><author-notes><corresp id="cor1">* E-mail: <email>niwodouhao@126.com</email></corresp><fn fn-type="conflict"><p><bold>Competing Interests: </bold>The authors have declared that no competing interests exist.</p></fn><fn fn-type="con"><p>Conceived and designed the experiments: RX LD. Performed the experiments: YL. Analyzed the data: SH YZ. Contributed reagents/materials/analysis tools: SY QL. Contributed to the writing of the manuscript: RX.</p></fn></author-notes><pub-date pub-type="collection"><year>2014</year></pub-date><pub-date pub-type="epub"><day>4</day><month>12</month><year>2014</year></pub-date><volume>9</volume><issue>12</issue><elocation-id>e113971</elocation-id><history><date date-type="received"><day>7</day><month>8</month><year>2014</year></date><date date-type="accepted"><day>1</day><month>11</month><year>2014</year></date></history><permissions><copyright-year>2014</copyright-year><copyright-holder>Xie et al</copyright-holder><license><license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License</ext-link>, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p></license></permissions><abstract><p>The R2R3MYB proteins represent one of the largest families of transcription factors, which play important roles in plant growth and development. Although genome-wide analysis of this family has been conducted in many species, little is known about <italic>R2R3MYB</italic> genes in citrus, In this study, 101 <italic>R2R3MYB</italic> genes has been identified in the citrus (<italic>Citrus sinesis</italic> and <italic>Citrus clementina</italic>) genomes, which are almost equal to the number of rice. Phylogenetic analysis revealed that they could be subdivided into 21 subgroups. The evolutionary relationships and the intro-exon organizations were also analyzed, revealing strong gene conservation but also the expansions of particular functional genes during the plant evolution. Tissue-specific expression profiles showed that 95 citrus <italic>R2R3MYB</italic> genes were expressed in at least one tissue and the other 6 genes showed very low expression in all tissues tested, suggesting that citrus <italic>R2R3MYB</italic> genes play important roles in the development of all citrus organs. The transcript abundance level analysis during abiotic conditions (NaCl, abscisic acid, jasmonic acid, drought and low temperature) identified a group of <italic>R2R3MYB</italic> genes that responded to one or multiple treatments, which showed a promising for improving citrus adaptation to stresses. Our results provided an essential foundation for the future selection of the citrus <italic>R2R3MYB</italic> genes for cloning and functional dissection with an aim of uncovering their roles in citrus growth and development.</p></abstract><funding-group><funding-statement>This work was funded by Chongqing fundamental and advanced research projects (cstc2013jcyjA80036), southwest university basic scientific research business expenses special funds (XDJK2013C052) and National Natural Science Foundation of China (31301743). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement></funding-group><counts><page-count count="21"></page-count></counts><custom-meta-group><custom-meta id="data-availability"><meta-name>Data Availability</meta-name><meta-value>The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting Information files.</meta-value></custom-meta></custom-meta-group></article-meta><notes><title>Data Availability</title><p>The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting Information files.</p></notes></front></pmc><affiliations><list></list><tree><noCountry><name sortKey="Deng, Lie" sort="Deng, Lie" uniqKey="Deng L" first="Lie" last="Deng">Lie Deng</name><name sortKey="He, Shaolan" sort="He, Shaolan" uniqKey="He S" first="Shaolan" last="He">Shaolan He</name><name sortKey="Li, Yongjie" sort="Li, Yongjie" uniqKey="Li Y" first="Yongjie" last="Li">Yongjie Li</name><name sortKey="Lv, Qiang" sort="Lv, Qiang" uniqKey="Lv Q" first="Qiang" last="Lv">Qiang Lv</name><name sortKey="Xie, Rangjin" sort="Xie, Rangjin" uniqKey="Xie R" first="Rangjin" last="Xie">Rangjin Xie</name><name sortKey="Yi, Shilai" sort="Yi, Shilai" uniqKey="Yi S" first="Shilai" last="Yi">Shilai Yi</name><name sortKey="Zheng, Yongqiang" sort="Zheng, Yongqiang" uniqKey="Zheng Y" first="Yongqiang" last="Zheng">Yongqiang Zheng</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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