Molecular Cloning and Bioinformatics Analysis of a New Plasma Membrane Na+/H+ Antiporter Gene from the Halophyte Kosteletzkya virginica
Identifieur interne : 000A10 ( Main/Merge ); précédent : 000A09; suivant : 000A11Molecular Cloning and Bioinformatics Analysis of a New Plasma Membrane Na+/H+ Antiporter Gene from the Halophyte Kosteletzkya virginica
Auteurs : Hongyan Wang [République populaire de Chine] ; Xiaoli Tang [République populaire de Chine] ; Chuyang Shao [République populaire de Chine] ; Hongbo Shao [République populaire de Chine] ; Honglei Wang [République populaire de Chine]Source :
- The Scientific World Journal [ 2356-6140 ] ; 2014.
Abstract
A new plasma membrane Na+/H+ antiporter gene (named as
Url:
DOI: 10.1155/2014/141675
PubMed: 25093196
PubMed Central: 4100297
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China Agricultural University, Yantai 264670, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Yantai Academy of China Agricultural University, Yantai 264670</wicri:regionArea><wicri:noRegion>Yantai 264670</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="I3">University of Chinese Academy of Sciences, Beijing 100049, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing 100049</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Tang, Xiaoli" sort="Tang, Xiaoli" uniqKey="Tang X" first="Xiaoli" last="Tang">Xiaoli Tang</name><affiliation wicri:level="1"><nlm:aff id="I1">Key Laboratory of Coastal Biology & Bioresources Utilization, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Yantai 264003, China</nlm:aff><country 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Chine</country><wicri:regionArea>College of Life Sciences, Shandong Agricultural University, Taian 271018</wicri:regionArea><wicri:noRegion>Taian 271018</wicri:noRegion></affiliation></author><author><name sortKey="Shao, Hongbo" sort="Shao, Hongbo" uniqKey="Shao H" first="Hongbo" last="Shao">Hongbo Shao</name><affiliation wicri:level="1"><nlm:aff id="I1">Key Laboratory of Coastal Biology & Bioresources Utilization, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Yantai 264003, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Coastal Biology & Bioresources Utilization, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Yantai 264003</wicri:regionArea><wicri:noRegion>Yantai 264003</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="I5">Institute for Life Sciences, Qingdao University of Science & Technology (QUST), Qingdao 266042, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute for Life Sciences, Qingdao University of Science & Technology (QUST), Qingdao 266042</wicri:regionArea><wicri:noRegion>Qingdao 266042</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Honglei" sort="Wang, Honglei" uniqKey="Wang H" first="Honglei" last="Wang">Honglei Wang</name><affiliation wicri:level="1"><nlm:aff id="I2">Yantai Academy of China Agricultural University, Yantai 264670, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Yantai Academy of China Agricultural University, Yantai 264670</wicri:regionArea><wicri:noRegion>Yantai 264670</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25093196</idno><idno type="pmc">4100297</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4100297</idno><idno type="RBID">PMC:4100297</idno><idno type="doi">10.1155/2014/141675</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">001288</idno><idno type="wicri:Area/Pmc/Curation">001286</idno><idno type="wicri:Area/Pmc/Checkpoint">000766</idno><idno type="wicri:Area/Ncbi/Merge">001788</idno><idno type="wicri:Area/Ncbi/Curation">001788</idno><idno type="wicri:Area/Ncbi/Checkpoint">001788</idno><idno type="wicri:doubleKey">2356-6140:2014:Wang H:molecular:cloning:and</idno><idno type="wicri:Area/Main/Merge">000A10</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Molecular Cloning and Bioinformatics Analysis of a New Plasma Membrane Na<sup><bold>+</bold></sup>/H<sup><bold>+</bold></sup> Antiporter Gene from the Halophyte <italic>Kosteletzkya virginica</italic></title><author><name sortKey="Wang, Hongyan" sort="Wang, Hongyan" uniqKey="Wang H" first="Hongyan" last="Wang">Hongyan Wang</name><affiliation wicri:level="1"><nlm:aff id="I1">Key Laboratory of Coastal Biology & Bioresources Utilization, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Yantai 264003, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Coastal Biology & Bioresources Utilization, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Yantai 264003</wicri:regionArea><wicri:noRegion>Yantai 264003</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="I2">Yantai Academy of China Agricultural University, Yantai 264670, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Yantai Academy of China Agricultural University, Yantai 264670</wicri:regionArea><wicri:noRegion>Yantai 264670</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="I3">University of Chinese Academy of Sciences, Beijing 100049, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing 100049</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Tang, Xiaoli" sort="Tang, Xiaoli" uniqKey="Tang X" first="Xiaoli" last="Tang">Xiaoli Tang</name><affiliation wicri:level="1"><nlm:aff id="I1">Key Laboratory of Coastal Biology & Bioresources Utilization, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Yantai 264003, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Coastal Biology & Bioresources Utilization, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Yantai 264003</wicri:regionArea><wicri:noRegion>Yantai 264003</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="I3">University of Chinese Academy of Sciences, Beijing 100049, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing 100049</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Shao, Chuyang" sort="Shao, Chuyang" uniqKey="Shao C" first="Chuyang" last="Shao">Chuyang Shao</name><affiliation wicri:level="1"><nlm:aff id="I4">College of Life Sciences, Shandong Agricultural University, Taian 271018, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life Sciences, Shandong Agricultural University, Taian 271018</wicri:regionArea><wicri:noRegion>Taian 271018</wicri:noRegion></affiliation></author><author><name sortKey="Shao, Hongbo" sort="Shao, Hongbo" uniqKey="Shao H" first="Hongbo" last="Shao">Hongbo Shao</name><affiliation wicri:level="1"><nlm:aff id="I1">Key Laboratory of Coastal Biology & Bioresources Utilization, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Yantai 264003, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Coastal Biology & Bioresources Utilization, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Yantai 264003</wicri:regionArea><wicri:noRegion>Yantai 264003</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="I5">Institute for Life Sciences, Qingdao University of Science & Technology (QUST), Qingdao 266042, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute for Life Sciences, Qingdao University of Science & Technology (QUST), Qingdao 266042</wicri:regionArea><wicri:noRegion>Qingdao 266042</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Honglei" sort="Wang, Honglei" uniqKey="Wang H" first="Honglei" last="Wang">Honglei Wang</name><affiliation wicri:level="1"><nlm:aff id="I2">Yantai Academy of China Agricultural University, Yantai 264670, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Yantai Academy of China Agricultural University, Yantai 264670</wicri:regionArea><wicri:noRegion>Yantai 264670</wicri:noRegion></affiliation></author></analytic><series><title level="j">The Scientific World Journal</title><idno type="ISSN">2356-6140</idno><idno type="eISSN">1537-744X</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>A new plasma membrane Na<sup>+</sup>/H<sup>+</sup> antiporter gene (named as <italic>KvSOS1</italic>) was cloned from the halophyte <italic>Kosteletzkya virginica</italic> by reverse-transcription-polymerase chain reaction (RT-PCR) and rapid amplification of cDNA ends (RACE) technology, which is a homologue of SOS1 (salt overly sensitive 1). The full-length cDNA is 3850 bp and contains an open reading frame (ORF) encoding a protein of 1147 amino acids with a molecular weight of 127.56 kDa and a theoretical pI of 6.18. Bioinformatics analysis indicated that the deduced protein appears to be a transmembrane protein with 12 transmembrane domains at the N-terminal region and a long hydrophilic tail in cytoplasm at its C-terminal region and shares 72–82% identity at the peptide level with other plant plasma membrane Na<sup>+</sup>/H<sup>+</sup> antiporters.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Yan, K" uniqKey="Yan K">K Yan</name></author><author><name sortKey="Shao, H" uniqKey="Shao H">H Shao</name></author><author><name sortKey="Shao, C" uniqKey="Shao C">C Shao</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ashraf, M" uniqKey="Ashraf M">M Ashraf</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tang, X" uniqKey="Tang X">X Tang</name></author><author><name sortKey="Mu, X" uniqKey="Mu X">X Mu</name></author><author><name sortKey="Shao, H" uniqKey="Shao H">H 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