Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the JcERF011 Gene in Rice Increased Its Sensitivity to Salinity Stress
Identifieur interne : 000202 ( Main/Merge ); précédent : 000201; suivant : 000203Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the JcERF011 Gene in Rice Increased Its Sensitivity to Salinity Stress
Auteurs : Yuehui Tang [République populaire de Chine] ; Shanshan Qin [République populaire de Chine] ; Yali Guo [République populaire de Chine] ; Yanbo Chen [République populaire de Chine] ; Pingzhi Wu [République populaire de Chine] ; Yaping Chen [République populaire de Chine] ; Meiru Li [République populaire de Chine] ; Huawu Jiang [République populaire de Chine] ; Guojiang Wu [République populaire de Chine]Source :
- PLoS ONE [ 1932-6203 ] ; 2016.
Abstract
The AP2/ERF transcription factors play crucial roles in plant growth, development and responses to biotic and abiotic stresses. A total of 119 AP2/ERF genes (
Url:
DOI: 10.1371/journal.pone.0150879
PubMed: 26943337
PubMed Central: 4778941
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510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>University of Chinese Academy of Sciences, Beijing, 100049, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing, 100049</wicri:regionArea><wicri:noRegion>100049</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Pingzhi" sort="Wu, Pingzhi" uniqKey="Wu P" first="Pingzhi" last="Wu">Pingzhi Wu</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Yaping" sort="Chen, Yaping" uniqKey="Chen Y" first="Yaping" last="Chen">Yaping Chen</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Li, Meiru" sort="Li, Meiru" uniqKey="Li M" first="Meiru" last="Li">Meiru Li</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Jiang, Huawu" sort="Jiang, Huawu" uniqKey="Jiang H" first="Huawu" last="Jiang">Huawu Jiang</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Guojiang" sort="Wu, Guojiang" uniqKey="Wu G" first="Guojiang" last="Wu">Guojiang Wu</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26943337</idno><idno type="pmc">4778941</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778941</idno><idno type="RBID">PMC:4778941</idno><idno type="doi">10.1371/journal.pone.0150879</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000381</idno><idno type="wicri:Area/Pmc/Curation">000380</idno><idno type="wicri:Area/Pmc/Checkpoint">000166</idno><idno type="wicri:Area/Ncbi/Merge">001F41</idno><idno type="wicri:Area/Ncbi/Curation">001F41</idno><idno type="wicri:Area/Ncbi/Checkpoint">001F41</idno><idno type="wicri:Area/Main/Merge">000202</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the <italic>JcERF011</italic> Gene in Rice Increased Its Sensitivity to Salinity Stress</title><author><name sortKey="Tang, Yuehui" sort="Tang, Yuehui" uniqKey="Tang Y" first="Yuehui" last="Tang">Yuehui Tang</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>University of Chinese Academy of Sciences, Beijing, 100049, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing, 100049</wicri:regionArea><wicri:noRegion>100049</wicri:noRegion></affiliation></author><author><name sortKey="Qin, Shanshan" sort="Qin, Shanshan" uniqKey="Qin S" first="Shanshan" last="Qin">Shanshan Qin</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>University of Chinese Academy of Sciences, Beijing, 100049, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing, 100049</wicri:regionArea><wicri:noRegion>100049</wicri:noRegion></affiliation></author><author><name sortKey="Guo, Yali" sort="Guo, Yali" uniqKey="Guo Y" first="Yali" last="Guo">Yali Guo</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>University of Chinese Academy of Sciences, Beijing, 100049, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing, 100049</wicri:regionArea><wicri:noRegion>100049</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Yanbo" sort="Chen, Yanbo" uniqKey="Chen Y" first="Yanbo" last="Chen">Yanbo Chen</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>University of Chinese Academy of Sciences, Beijing, 100049, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing, 100049</wicri:regionArea><wicri:noRegion>100049</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Pingzhi" sort="Wu, Pingzhi" uniqKey="Wu P" first="Pingzhi" last="Wu">Pingzhi Wu</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Yaping" sort="Chen, Yaping" uniqKey="Chen Y" first="Yaping" last="Chen">Yaping Chen</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Li, Meiru" sort="Li, Meiru" uniqKey="Li M" first="Meiru" last="Li">Meiru Li</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Jiang, Huawu" sort="Jiang, Huawu" uniqKey="Jiang H" first="Huawu" last="Jiang">Huawu Jiang</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Guojiang" sort="Wu, Guojiang" uniqKey="Wu G" first="Guojiang" last="Wu">Guojiang Wu</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The AP2/ERF transcription factors play crucial roles in plant growth, development and responses to biotic and abiotic stresses. A total of 119 AP2/ERF genes (<italic>JcAP2/ERFs</italic>) have been identified in the physic nut genome; they include 16 AP2, 4 RAV, 1 Soloist, and 98 ERF genes. Phylogenetic analysis indicated that physic nut AP2 genes could be divided into 3 subgroups, while ERF genes could be classed into 11 groups or 43 subgroups. The AP2/ERF genes are non-randomly distributed across the 11 linkage groups of the physic nut genome and retain many duplicates which arose from ancient duplication events. The expression patterns of several <italic>JcAP2/ERF</italic> duplicates in the physic nut showed differences among four tissues (root, stem, leaf, and seed), and 38 <italic>JcAP2/ERF</italic> genes responded to at least one abiotic stressor (drought, salinity, phosphate starvation, and nitrogen starvation) in leaves and/or roots according to analysis of digital gene expression tag data. The expression of <italic>JcERF011</italic> was downregulated by salinity stress in physic nut roots. Overexpression of the <italic>JcERF011</italic> gene in rice plants increased its sensitivity to salinity stress. The increased expression levels of several salt tolerance-related genes were impaired in the <italic>JcERF011</italic>-overexpressing plants under salinity stress.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Jofuku, Kd" uniqKey="Jofuku K">KD Jofuku</name></author><author><name sortKey="Den Boer, Bg" uniqKey="Den Boer B">BG den Boer</name></author><author><name sortKey="Van Montagu, M" uniqKey="Van Montagu M">M Van Montagu</name></author><author><name sortKey="Okamuro, Jk" uniqKey="Okamuro J">JK Okamuro</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ohmetakagi, M" uniqKey="Ohmetakagi M">M Ohmetakagi</name></author><author><name sortKey="Shinshi, H" uniqKey="Shinshi H">H Shinshi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wessler, Sr" uniqKey="Wessler S">SR Wessler</name></author></analytic></biblStruct><biblStruct><analytic><author><name 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