Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the JcERF011 Gene in Rice Increased Its Sensitivity to Salinity Stress
Identifieur interne : 001F41 ( Ncbi/Merge ); précédent : 001F40; suivant : 001F42Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the JcERF011 Gene in Rice Increased Its Sensitivity to Salinity Stress
Auteurs : Yuehui Tang [République populaire de Chine] ; Shanshan Qin [République populaire de Chine] ; Yali Guo [République populaire de Chine] ; Yanbo Chen [République populaire de Chine] ; Pingzhi Wu [République populaire de Chine] ; Yaping Chen [République populaire de Chine] ; Meiru Li [République populaire de Chine] ; Huawu Jiang [République populaire de Chine] ; Guojiang Wu [République populaire de Chine]Source :
- PLoS ONE [ 1932-6203 ] ; 2016.
Abstract
The AP2/ERF transcription factors play crucial roles in plant growth, development and responses to biotic and abiotic stresses. A total of 119 AP2/ERF genes (
Url:
DOI: 10.1371/journal.pone.0150879
PubMed: 26943337
PubMed Central: 4778941
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510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>University of Chinese Academy of Sciences, Beijing, 100049, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing, 100049</wicri:regionArea><wicri:noRegion>100049</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Pingzhi" sort="Wu, Pingzhi" uniqKey="Wu P" first="Pingzhi" last="Wu">Pingzhi Wu</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Yaping" sort="Chen, Yaping" uniqKey="Chen Y" first="Yaping" last="Chen">Yaping Chen</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Li, Meiru" sort="Li, Meiru" uniqKey="Li M" first="Meiru" last="Li">Meiru Li</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Jiang, Huawu" sort="Jiang, Huawu" uniqKey="Jiang H" first="Huawu" last="Jiang">Huawu Jiang</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Guojiang" sort="Wu, Guojiang" uniqKey="Wu G" first="Guojiang" last="Wu">Guojiang Wu</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26943337</idno><idno type="pmc">4778941</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778941</idno><idno type="RBID">PMC:4778941</idno><idno type="doi">10.1371/journal.pone.0150879</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000381</idno><idno type="wicri:Area/Pmc/Curation">000380</idno><idno type="wicri:Area/Pmc/Checkpoint">000166</idno><idno type="wicri:Area/Ncbi/Merge">001F41</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the <italic>JcERF011</italic> Gene in Rice Increased Its Sensitivity to Salinity Stress</title><author><name sortKey="Tang, Yuehui" sort="Tang, Yuehui" uniqKey="Tang Y" first="Yuehui" last="Tang">Yuehui Tang</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>University of Chinese Academy of Sciences, Beijing, 100049, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing, 100049</wicri:regionArea><wicri:noRegion>100049</wicri:noRegion></affiliation></author><author><name sortKey="Qin, Shanshan" sort="Qin, Shanshan" uniqKey="Qin S" first="Shanshan" last="Qin">Shanshan Qin</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>University of Chinese Academy of Sciences, Beijing, 100049, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing, 100049</wicri:regionArea><wicri:noRegion>100049</wicri:noRegion></affiliation></author><author><name sortKey="Guo, Yali" sort="Guo, Yali" uniqKey="Guo Y" first="Yali" last="Guo">Yali Guo</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>University of Chinese Academy of Sciences, Beijing, 100049, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing, 100049</wicri:regionArea><wicri:noRegion>100049</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Yanbo" sort="Chen, Yanbo" uniqKey="Chen Y" first="Yanbo" last="Chen">Yanbo Chen</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>University of Chinese Academy of Sciences, Beijing, 100049, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing, 100049</wicri:regionArea><wicri:noRegion>100049</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Pingzhi" sort="Wu, Pingzhi" uniqKey="Wu P" first="Pingzhi" last="Wu">Pingzhi Wu</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Yaping" sort="Chen, Yaping" uniqKey="Chen Y" first="Yaping" last="Chen">Yaping Chen</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Li, Meiru" sort="Li, Meiru" uniqKey="Li M" first="Meiru" last="Li">Meiru Li</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Jiang, Huawu" sort="Jiang, Huawu" uniqKey="Jiang H" first="Huawu" last="Jiang">Huawu Jiang</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Guojiang" sort="Wu, Guojiang" uniqKey="Wu G" first="Guojiang" last="Wu">Guojiang Wu</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650</wicri:regionArea><wicri:noRegion>510650</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The AP2/ERF transcription factors play crucial roles in plant growth, development and responses to biotic and abiotic stresses. A total of 119 AP2/ERF genes (<italic>JcAP2/ERFs</italic>) have been identified in the physic nut genome; they include 16 AP2, 4 RAV, 1 Soloist, and 98 ERF genes. Phylogenetic analysis indicated that physic nut AP2 genes could be divided into 3 subgroups, while ERF genes could be classed into 11 groups or 43 subgroups. The AP2/ERF genes are non-randomly distributed across the 11 linkage groups of the physic nut genome and retain many duplicates which arose from ancient duplication events. The expression patterns of several <italic>JcAP2/ERF</italic> duplicates in the physic nut showed differences among four tissues (root, stem, leaf, and seed), and 38 <italic>JcAP2/ERF</italic> genes responded to at least one abiotic stressor (drought, salinity, phosphate starvation, and nitrogen starvation) in leaves and/or roots according to analysis of digital gene expression tag data. The expression of <italic>JcERF011</italic> was downregulated by salinity stress in physic nut roots. Overexpression of the <italic>JcERF011</italic> gene in rice plants increased its sensitivity to salinity stress. The increased expression levels of several salt tolerance-related genes were impaired in the <italic>JcERF011</italic>-overexpressing plants under salinity stress.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Jofuku, Kd" uniqKey="Jofuku K">KD Jofuku</name></author><author><name sortKey="Den Boer, Bg" uniqKey="Den Boer B">BG den Boer</name></author><author><name sortKey="Van Montagu, M" uniqKey="Van Montagu M">M Van Montagu</name></author><author><name sortKey="Okamuro, Jk" uniqKey="Okamuro J">JK Okamuro</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ohmetakagi, M" uniqKey="Ohmetakagi M">M Ohmetakagi</name></author><author><name sortKey="Shinshi, H" uniqKey="Shinshi H">H Shinshi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wessler, Sr" uniqKey="Wessler S">SR Wessler</name></author></analytic></biblStruct><biblStruct><analytic><author><name 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<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id><journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group><journal-title>PLoS ONE</journal-title></journal-title-group><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, CA USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">26943337</article-id><article-id pub-id-type="pmc">4778941</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0150879</article-id><article-id pub-id-type="publisher-id">PONE-D-15-53005</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Plant Science</subject><subj-group><subject>Plant Physiology</subject><subj-group><subject>Plant Defenses</subject><subj-group><subject>Plant Resistance to Abiotic Stress</subject></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Plant Science</subject><subj-group><subject>Plant Pathology</subject><subj-group><subject>Plant Resistance to Abiotic Stress</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Ecology</subject><subj-group><subject>Plant Ecology</subject><subj-group><subject>Plant-Environment Interactions</subject><subj-group><subject>Plant Resistance to Abiotic Stress</subject></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Ecology and Environmental Sciences</subject><subj-group><subject>Ecology</subject><subj-group><subject>Plant Ecology</subject><subj-group><subject>Plant-Environment Interactions</subject><subj-group><subject>Plant Resistance to Abiotic Stress</subject></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Plant Science</subject><subj-group><subject>Plant Ecology</subject><subj-group><subject>Plant-Environment Interactions</subject><subj-group><subject>Plant Resistance to Abiotic Stress</subject></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Agriculture</subject><subj-group><subject>Crop Science</subject><subj-group><subject>Crops</subject><subj-group><subject>Cereal Crops</subject><subj-group><subject>Rice</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Organisms</subject><subj-group><subject>Plants</subject><subj-group><subject>Grasses</subject><subj-group><subject>Rice</subject></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Research and Analysis Methods</subject><subj-group><subject>Model Organisms</subject><subj-group><subject>Plant and Algal Models</subject><subj-group><subject>Rice</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Computational Biology</subject><subj-group><subject>Genome Complexity</subject><subj-group><subject>Introns</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Genetics</subject><subj-group><subject>Genomics</subject><subj-group><subject>Genome Complexity</subject><subj-group><subject>Introns</subject></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Genetics</subject><subj-group><subject>Genomics</subject><subj-group><subject>Plant Genomics</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Biotechnology</subject><subj-group><subject>Plant Biotechnology</subject><subj-group><subject>Plant Genomics</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Plant Science</subject><subj-group><subject>Plant Biotechnology</subject><subj-group><subject>Plant Genomics</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Genetics</subject><subj-group><subject>Plant Genetics</subject><subj-group><subject>Plant Genomics</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Plant Science</subject><subj-group><subject>Plant Genetics</subject><subj-group><subject>Plant Genomics</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Plant Science</subject><subj-group><subject>Plant Anatomy</subject><subj-group><subject>Leaves</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Physical Sciences</subject><subj-group><subject>Chemistry</subject><subj-group><subject>Chemical Properties</subject><subj-group><subject>Salinity</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Physical Sciences</subject><subj-group><subject>Chemistry</subject><subj-group><subject>Physical Chemistry</subject><subj-group><subject>Chemical Properties</subject><subj-group><subject>Salinity</subject></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Genetics</subject><subj-group><subject>Gene Expression</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Molecular Biology</subject><subj-group><subject>Molecular Biology Techniques</subject><subj-group><subject>Molecular Biology Assays and Analysis Techniques</subject><subj-group><subject>Phylogenetic Analysis</subject></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Research and Analysis Methods</subject><subj-group><subject>Molecular Biology Techniques</subject><subj-group><subject>Molecular Biology Assays and Analysis Techniques</subject><subj-group><subject>Phylogenetic Analysis</subject></subj-group></subj-group></subj-group></subj-group></article-categories><title-group><article-title>Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the <italic>JcERF011</italic> Gene in Rice Increased Its Sensitivity to Salinity Stress</article-title><alt-title alt-title-type="running-head">AP2/ERF Genes in the Physic Nut Genome</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Tang</surname><given-names>Yuehui</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Qin</surname><given-names>Shanshan</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Guo</surname><given-names>Yali</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Chen</surname><given-names>Yanbo</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Wu</surname><given-names>Pingzhi</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Chen</surname><given-names>Yaping</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Li</surname><given-names>Meiru</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Jiang</surname><given-names>Huawu</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Wu</surname><given-names>Guojiang</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="corresp" rid="cor001">*</xref></contrib></contrib-group><aff id="aff001"><label>1</label><addr-line>Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, PR China</addr-line></aff><aff id="aff002"><label>2</label><addr-line>University of Chinese Academy of Sciences, Beijing, 100049, PR China</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Zhang</surname><given-names>Jin-Song</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1"><addr-line>Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, CHINA</addr-line></aff><author-notes><fn fn-type="conflict" id="coi001"><p><bold>Competing Interests: </bold>The authors have declared that no competing interests exist.</p></fn><fn fn-type="con" id="contrib001"><p>Conceived and designed the experiments: HJ GW ML. Performed the experiments: YT SQ YG YC. Analyzed the data: YT PW YC. Contributed reagents/materials/analysis tools: YT SQ YG YC. Wrote the paper: YT. Designed the software used in analysis, PhyML version 3.0: YT.</p></fn><corresp id="cor001">* E-mail: <email>wugj@scbg.ac.cn</email></corresp></author-notes><pub-date pub-type="epub"><day>4</day><month>3</month><year>2016</year></pub-date><pub-date pub-type="collection"><year>2016</year></pub-date><volume>11</volume><issue>3</issue><elocation-id>e0150879</elocation-id><history><date date-type="received"><day>7</day><month>12</month><year>2015</year></date><date date-type="accepted"><day>19</day><month>2</month><year>2016</year></date></history><permissions><copyright-statement>© 2016 Tang et al</copyright-statement><copyright-year>2016</copyright-year><copyright-holder>Tang et al</copyright-holder><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License</ext-link>, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p></license></permissions><self-uri content-type="pdf" xlink:type="simple" xlink:href="pone.0150879.pdf"></self-uri><abstract><p>The AP2/ERF transcription factors play crucial roles in plant growth, development and responses to biotic and abiotic stresses. A total of 119 AP2/ERF genes (<italic>JcAP2/ERFs</italic>) have been identified in the physic nut genome; they include 16 AP2, 4 RAV, 1 Soloist, and 98 ERF genes. Phylogenetic analysis indicated that physic nut AP2 genes could be divided into 3 subgroups, while ERF genes could be classed into 11 groups or 43 subgroups. The AP2/ERF genes are non-randomly distributed across the 11 linkage groups of the physic nut genome and retain many duplicates which arose from ancient duplication events. The expression patterns of several <italic>JcAP2/ERF</italic> duplicates in the physic nut showed differences among four tissues (root, stem, leaf, and seed), and 38 <italic>JcAP2/ERF</italic> genes responded to at least one abiotic stressor (drought, salinity, phosphate starvation, and nitrogen starvation) in leaves and/or roots according to analysis of digital gene expression tag data. The expression of <italic>JcERF011</italic> was downregulated by salinity stress in physic nut roots. Overexpression of the <italic>JcERF011</italic> gene in rice plants increased its sensitivity to salinity stress. The increased expression levels of several salt tolerance-related genes were impaired in the <italic>JcERF011</italic>-overexpressing plants under salinity stress.</p></abstract><funding-group><funding-statement>This work was supported by grants from the National Basic Research Program of China (973 Program) (grant no. 2010CB126603) (<ext-link ext-link-type="uri" xlink:href="http://www.973.gov.cn/">http://www.973.gov.cn/</ext-link>) and the Knowledge Innovation Program of the Chinese Academy of Sciences (grant no. KSCX2-EW-J-28) (<ext-link ext-link-type="uri" xlink:href="http://www.cas.cn/">http://www.cas.cn/</ext-link>). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement></funding-group><counts><fig-count count="6"></fig-count><table-count count="0"></table-count><page-count count="20"></page-count></counts><custom-meta-group><custom-meta id="data-availability"><meta-name>Data Availability</meta-name><meta-value>All relevant data are within the paper and its Supporting Information files.</meta-value></custom-meta></custom-meta-group></article-meta><notes><title>Data Availability</title><p>All relevant data are within the paper and its Supporting Information files.</p></notes></front></pmc><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Tang, Yuehui" sort="Tang, Yuehui" uniqKey="Tang Y" first="Yuehui" last="Tang">Yuehui Tang</name></noRegion><name sortKey="Chen, Yanbo" sort="Chen, Yanbo" uniqKey="Chen Y" first="Yanbo" last="Chen">Yanbo Chen</name><name sortKey="Chen, Yanbo" sort="Chen, Yanbo" uniqKey="Chen Y" first="Yanbo" last="Chen">Yanbo Chen</name><name sortKey="Chen, Yaping" sort="Chen, Yaping" uniqKey="Chen Y" first="Yaping" last="Chen">Yaping Chen</name><name sortKey="Guo, Yali" sort="Guo, Yali" uniqKey="Guo Y" first="Yali" last="Guo">Yali Guo</name><name sortKey="Guo, Yali" sort="Guo, Yali" uniqKey="Guo Y" first="Yali" last="Guo">Yali Guo</name><name sortKey="Jiang, Huawu" sort="Jiang, Huawu" uniqKey="Jiang H" first="Huawu" last="Jiang">Huawu Jiang</name><name sortKey="Li, Meiru" sort="Li, Meiru" uniqKey="Li M" first="Meiru" last="Li">Meiru Li</name><name sortKey="Qin, Shanshan" sort="Qin, Shanshan" uniqKey="Qin S" first="Shanshan" last="Qin">Shanshan Qin</name><name sortKey="Qin, Shanshan" sort="Qin, Shanshan" uniqKey="Qin S" first="Shanshan" last="Qin">Shanshan Qin</name><name sortKey="Tang, Yuehui" sort="Tang, Yuehui" uniqKey="Tang Y" first="Yuehui" last="Tang">Yuehui Tang</name><name sortKey="Wu, Guojiang" sort="Wu, Guojiang" uniqKey="Wu G" first="Guojiang" last="Wu">Guojiang Wu</name><name sortKey="Wu, Pingzhi" sort="Wu, Pingzhi" uniqKey="Wu P" first="Pingzhi" last="Wu">Pingzhi Wu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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