Genome-Wide Small RNA Analysis of Soybean Reveals Auxin-Responsive microRNAs that are Differentially Expressed in Response to Salt Stress in Root Apex
Identifieur interne : 000198 ( Main/Exploration ); précédent : 000197; suivant : 000199Genome-Wide Small RNA Analysis of Soybean Reveals Auxin-Responsive microRNAs that are Differentially Expressed in Response to Salt Stress in Root Apex
Auteurs : Zhengxi Sun [République populaire de Chine] ; Youning Wang [République populaire de Chine] ; Fupeng Mou [République populaire de Chine] ; Yinping Tian [République populaire de Chine] ; Liang Chen [République populaire de Chine] ; Senlei Zhang [République populaire de Chine] ; Qiong Jiang [République populaire de Chine] ; Xia Li [République populaire de Chine]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2016.
Abstract
Root growth and the architecture of the root system in
Url:
DOI: 10.3389/fpls.2015.01273
PubMed: 26834773
PubMed Central: 4716665
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-Wide Small RNA Analysis of Soybean Reveals Auxin-Responsive microRNAs that are Differentially Expressed in Response to Salt Stress in Root Apex</title><author><name sortKey="Sun, Zhengxi" sort="Sun, Zhengxi" uniqKey="Sun Z" first="Zhengxi" last="Sun">Zhengxi Sun</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>State Key Laboratory of Plant Cell and Chromosome Engineering, Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences</institution><country>Shijiazhuang, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>University of Chinese Academy of Sciences</institution><country>Beijing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Wang, Youning" sort="Wang, Youning" uniqKey="Wang Y" first="Youning" last="Wang">Youning Wang</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Mou, Fupeng" sort="Mou, Fupeng" uniqKey="Mou F" first="Fupeng" last="Mou">Fupeng Mou</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>State Key Laboratory of Plant Cell and Chromosome Engineering, Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences</institution><country>Shijiazhuang, China</country></nlm:aff><country 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Chinese Academy of Sciences</institution><country>Shijiazhuang, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Senlei" sort="Zhang, Senlei" uniqKey="Zhang S" first="Senlei" last="Zhang">Senlei Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>State Key Laboratory of Plant Cell and Chromosome Engineering, Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences</institution><country>Shijiazhuang, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Jiang, Qiong" sort="Jiang, Qiong" uniqKey="Jiang Q" first="Qiong" last="Jiang">Qiong Jiang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>State Key Laboratory of Plant Cell and Chromosome Engineering, Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences</institution><country>Shijiazhuang, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Li, Xia" sort="Li, Xia" uniqKey="Li X" first="Xia" last="Li">Xia Li</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26834773</idno><idno type="pmc">4716665</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716665</idno><idno type="RBID">PMC:4716665</idno><idno type="doi">10.3389/fpls.2015.01273</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000295</idno><idno type="wicri:Area/Pmc/Curation">000294</idno><idno type="wicri:Area/Pmc/Checkpoint">000162</idno><idno type="wicri:Area/Ncbi/Merge">001E93</idno><idno type="wicri:Area/Ncbi/Curation">001E93</idno><idno type="wicri:Area/Ncbi/Checkpoint">001E93</idno><idno type="wicri:Area/Main/Merge">000198</idno><idno type="wicri:Area/Main/Curation">000198</idno><idno type="wicri:Area/Main/Exploration">000198</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome-Wide Small RNA Analysis of Soybean Reveals Auxin-Responsive microRNAs that are Differentially Expressed in Response to Salt Stress in Root Apex</title><author><name sortKey="Sun, Zhengxi" sort="Sun, Zhengxi" uniqKey="Sun Z" first="Zhengxi" last="Sun">Zhengxi Sun</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>State Key Laboratory of Plant Cell and Chromosome Engineering, Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences</institution><country>Shijiazhuang, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>University of Chinese Academy of Sciences</institution><country>Beijing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Wang, Youning" sort="Wang, Youning" uniqKey="Wang Y" first="Youning" last="Wang">Youning Wang</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Mou, Fupeng" sort="Mou, Fupeng" uniqKey="Mou F" first="Fupeng" last="Mou">Fupeng Mou</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>State Key Laboratory of Plant Cell and Chromosome Engineering, Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences</institution><country>Shijiazhuang, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Tian, Yinping" sort="Tian, Yinping" uniqKey="Tian Y" first="Yinping" last="Tian">Yinping Tian</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>State Key Laboratory of Plant Cell and Chromosome Engineering, Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences</institution><country>Shijiazhuang, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Chen, Liang" sort="Chen, Liang" uniqKey="Chen L" first="Liang" last="Chen">Liang Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>State Key Laboratory of Plant Cell and Chromosome Engineering, Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences</institution><country>Shijiazhuang, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Senlei" sort="Zhang, Senlei" uniqKey="Zhang S" first="Senlei" last="Zhang">Senlei Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>State Key Laboratory of Plant Cell and Chromosome Engineering, Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences</institution><country>Shijiazhuang, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Jiang, Qiong" sort="Jiang, Qiong" uniqKey="Jiang Q" first="Qiong" last="Jiang">Qiong Jiang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>State Key Laboratory of Plant Cell and Chromosome Engineering, Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences</institution><country>Shijiazhuang, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Li, Xia" sort="Li, Xia" uniqKey="Li X" first="Xia" last="Li">Xia Li</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Root growth and the architecture of the root system in <italic>Arabidopsis</italic> are largely determined by root meristematic activity. Legume roots show strong developmental plasticity in response to both abiotic and biotic stimuli, including symbiotic rhizobia. However, a global analysis of gene regulation in the root meristem of soybean plants is lacking. In this study, we performed a global analysis of the small RNA transcriptome of root tips from soybean seedlings grown under normal and salt stress conditions. In total, 71 miRNA candidates, including known and novel variants of 59 miRNA families, were identified. We found 66 salt-responsive miRNAs in the soybean root meristem; among them, 22 are novel miRNAs. Interestingly, we found auxin-responsive <italic>cis</italic>-elements in the promoters of many salt-responsive miRNAs, implying that these miRNAs may be regulated by auxin and auxin signaling plays a key role in regulating the plasticity of the miRNAome and root development in soybean. A functional analysis of miR399, a salt-responsive miRNA in the root meristem, indicates the crucial role of this miRNA in modulating soybean root developmental plasticity. Our data provide novel insight into the miRNAome-mediated regulatory mechanism in soybean root growth under salt stress.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Aghaei, K" uniqKey="Aghaei K">K. Aghaei</name></author><author><name sortKey="Ehsanpour, A A" uniqKey="Ehsanpour A">A. A. Ehsanpour</name></author><author><name sortKey="Shah, A H" uniqKey="Shah A">A. H. Shah</name></author><author><name sortKey="Komatsu, S" uniqKey="Komatsu S">S. Komatsu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Aida, M" uniqKey="Aida M">M. Aida</name></author><author><name sortKey="Beis, D" uniqKey="Beis D">D. Beis</name></author><author><name sortKey="Heidstra, R" uniqKey="Heidstra R">R. 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Kieber</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Sun, Zhengxi" sort="Sun, Zhengxi" uniqKey="Sun Z" first="Zhengxi" last="Sun">Zhengxi Sun</name></noRegion><name sortKey="Chen, Liang" sort="Chen, Liang" uniqKey="Chen L" first="Liang" last="Chen">Liang Chen</name><name sortKey="Jiang, Qiong" sort="Jiang, Qiong" uniqKey="Jiang Q" first="Qiong" last="Jiang">Qiong Jiang</name><name sortKey="Li, Xia" sort="Li, Xia" uniqKey="Li X" first="Xia" last="Li">Xia Li</name><name sortKey="Mou, Fupeng" sort="Mou, Fupeng" uniqKey="Mou F" first="Fupeng" last="Mou">Fupeng Mou</name><name sortKey="Sun, Zhengxi" sort="Sun, Zhengxi" uniqKey="Sun Z" first="Zhengxi" last="Sun">Zhengxi Sun</name><name sortKey="Tian, Yinping" sort="Tian, Yinping" uniqKey="Tian Y" first="Yinping" last="Tian">Yinping Tian</name><name sortKey="Wang, Youning" sort="Wang, Youning" uniqKey="Wang Y" first="Youning" last="Wang">Youning Wang</name><name sortKey="Zhang, Senlei" sort="Zhang, Senlei" uniqKey="Zhang S" first="Senlei" last="Zhang">Senlei Zhang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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