MycorrhizaeV1, Main, Exploration, bibRecord, 002F90

Genetic diversity of ectomycorrhizal Basidiomycetes from African and Indian tropical rain forests.

Identifieur interne : 002F90 ( Main/Exploration ); précédent : 002F89; suivant : 002F91

Genetic diversity of ectomycorrhizal Basidiomycetes from African and Indian tropical rain forests.

Auteurs : Taiana Riviere [France, Inde] ; Abdallah G. Diedhiou [France] ; Moussa Diabate [Guinée] ; G. Senthilarasu [Inde] ; K. Natarajan [Inde] ; Annemieke Verbeken [Belgique] ; Bart Buyck [France] ; Bernard Dreyfus [France] ; Gilles Bena [France] ; Amadou M. Ba [France]

Source :

Mycorrhiza [ 0940-6360 ] ; 2007.

RBID : pubmed:17334790

Descripteurs français

KwdFr :
- ADN fongique (composition chimique), ADN fongique (génétique), ADN ribosomique (composition chimique), ADN ribosomique (génétique), ARN ribosomique 23S (génétique), Afrique (MeSH), Agaricales (MeSH), Analyse de séquence d'ADN (MeSH), Arbres (microbiologie), Basidiomycota (classification), Basidiomycota (génétique), Basidiomycota (isolement et purification), Biodiversité (MeSH), Champignons (MeSH), Données de séquences moléculaires (MeSH), Inde (MeSH), Mycorhizes (MeSH), Phylogenèse (MeSH), Plantes (microbiologie), Variation génétique (MeSH), Écosystème (MeSH).
MESH :
- composition chimique : ADN fongique, ADN ribosomique, Basidiomycota.
- génétique : ADN fongique, ADN ribosomique, ARN ribosomique 23S, Basidiomycota.
- isolement et purification : Basidiomycota.
- microbiologie : Arbres, Plantes.
- Afrique, Agaricales, Analyse de séquence d'ADN, Biodiversité, Champignons, Données de séquences moléculaires, Inde, Mycorhizes, Phylogenèse, Variation génétique, Écosystème.
Wicri :
- geographic : Inde.

English descriptors

KwdEn :
- Africa (MeSH), Agaricales (MeSH), Basidiomycota (classification), Basidiomycota (genetics), Basidiomycota (isolation & purification), Biodiversity (MeSH), DNA, Fungal (chemistry), DNA, Fungal (genetics), DNA, Ribosomal (chemistry), DNA, Ribosomal (genetics), Ecosystem (MeSH), Fungi (MeSH), Genetic Variation (MeSH), India (MeSH), Molecular Sequence Data (MeSH), Mycorrhizae (MeSH), Phylogeny (MeSH), Plants (microbiology), RNA, Ribosomal, 23S (genetics), Sequence Analysis, DNA (MeSH), Trees (microbiology).
MESH :
- chemical , chemistry : DNA, Fungal, DNA, Ribosomal.
- chemical , genetics : DNA, Fungal, DNA, Ribosomal, RNA, Ribosomal, 23S.
- geographic : Africa, India.
- classification : Basidiomycota.
- genetics : Basidiomycota.
- isolation & purification : Basidiomycota.
- microbiology : Plants, Trees.
- Agaricales, Biodiversity, Ecosystem, Fungi, Genetic Variation, Molecular Sequence Data, Mycorrhizae, Phylogeny, Sequence Analysis, DNA.

Abstract

Ectomycorrhizal (ECM) fungi have a worldwide distribution. However, the ecology of tropical ECM fungi is poorly documented, limiting our understanding of the symbiotic associations between tropical plants and fungi. ECM Basidiomycete diversity was investigated for the first time in two tropical rain forests in Africa (Western Upper Guinea) and in Asia (Western Ghats, India), using a fragment of the mitochondrial large subunit rRNA gene to type 140 sporocarps and 54 ectomycorrhizas. To evaluate taxonomic diversity, phylogenetic analyses were performed, and 40 sequences included from identified European specimens were used as taxonomic benchmarks. Five clades were recovered corresponding to six taxonomic groups: boletoids, sclerodermatoids, russuloids, thelephoroids, and a clade grouping the Amanitaceae and Tricholomataceae families. Our results revealed that the Russulaceae species display a great diversity with several putative new species, especially in Guinea. Other taxonomic issues at family/section levels are also briefly discussed. This study provides preliminary insights into taxonomic diversity, ECM status, and biogeographic patterns of ECM fungi in tropical two rain forest ecosystems, which appear to be as diverse as in temperate and boreal forests.

DOI: 10.1007/s00572-007-0117-6
PubMed: 17334790

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 003012
to stream Main, to step Curation: 003012

Le document en format XML

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<affiliation wicri:level="1"><nlm:affiliation>Laboratoire de Biologie et Physiologie Végétales, Université Antilles-Guyane, BP. 592, 97159, Pointe-à-Pitre, Guadeloupe, France.</nlm:affiliation>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic diversity of ectomycorrhizal Basidiomycetes from African and Indian tropical rain forests.</title>
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<author><name sortKey="Diedhiou, Abdallah G" sort="Diedhiou, Abdallah G" uniqKey="Diedhiou A" first="Abdallah G" last="Diedhiou">Abdallah G. Diedhiou</name>
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<author><name sortKey="Diabate, Moussa" sort="Diabate, Moussa" uniqKey="Diabate M" first="Moussa" last="Diabate">Moussa Diabate</name>
<affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche Agronomique de Guinée, Conakry, Guinea.</nlm:affiliation>
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<author><name sortKey="Senthilarasu, G" sort="Senthilarasu, G" uniqKey="Senthilarasu G" first="G" last="Senthilarasu">G. Senthilarasu</name>
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<country xml:lang="fr">Inde</country>
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<wicri:noRegion>Chennai</wicri:noRegion>
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<author><name sortKey="Natarajan, K" sort="Natarajan, K" uniqKey="Natarajan K" first="K" last="Natarajan">K. Natarajan</name>
<affiliation wicri:level="1"><nlm:affiliation>Centre of Advanced Study in Botany (CASB), University of Madras, Chennai, India.</nlm:affiliation>
<country xml:lang="fr">Inde</country>
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<wicri:noRegion>Chennai</wicri:noRegion>
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<author><name sortKey="Verbeken, Annemieke" sort="Verbeken, Annemieke" uniqKey="Verbeken A" first="Annemieke" last="Verbeken">Annemieke Verbeken</name>
<affiliation wicri:level="4"><nlm:affiliation>Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000, Ghent, Belgium.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000, Ghent</wicri:regionArea>
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<placeName><settlement type="city">Gand</settlement>
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<region type="district" nuts="2">Province de Flandre-Orientale</region>
</placeName>
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<author><name sortKey="Buyck, Bart" sort="Buyck, Bart" uniqKey="Buyck B" first="Bart" last="Buyck">Bart Buyck</name>
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<country xml:lang="fr">France</country>
<wicri:regionArea>Muséum National d'Histoire Naturelle (MNHN), Cryptogamie, 12 rue Buffon, 75005, Paris</wicri:regionArea>
<placeName><region type="region" nuts="2">Île-de-France</region>
<settlement type="city">Paris</settlement>
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<author><name sortKey="Dreyfus, Bernard" sort="Dreyfus, Bernard" uniqKey="Dreyfus B" first="Bernard" last="Dreyfus">Bernard Dreyfus</name>
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<country xml:lang="fr">France</country>
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<author><name sortKey="Bena, Gilles" sort="Bena, Gilles" uniqKey="Bena G" first="Gilles" last="Bena">Gilles Bena</name>
<affiliation wicri:level="3"><nlm:affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</nlm:affiliation>
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<author><name sortKey="Ba, Amadou M" sort="Ba, Amadou M" uniqKey="Ba A" first="Amadou M" last="Ba">Amadou M. Ba</name>
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<country xml:lang="fr">France</country>
<wicri:regionArea>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez</wicri:regionArea>
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<affiliation wicri:level="1"><nlm:affiliation>Laboratoire de Biologie et Physiologie Végétales, Université Antilles-Guyane, BP. 592, 97159, Pointe-à-Pitre, Guadeloupe, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire de Biologie et Physiologie Végétales, Université Antilles-Guyane, BP. 592, 97159, Pointe-à-Pitre, Guadeloupe</wicri:regionArea>
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<series><title level="j">Mycorrhiza</title>
<idno type="ISSN">0940-6360</idno>
<imprint><date when="2007" type="published">2007</date>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Africa (MeSH)</term>
<term>Agaricales (MeSH)</term>
<term>Basidiomycota (classification)</term>
<term>Basidiomycota (genetics)</term>
<term>Basidiomycota (isolation & purification)</term>
<term>Biodiversity (MeSH)</term>
<term>DNA, Fungal (chemistry)</term>
<term>DNA, Fungal (genetics)</term>
<term>DNA, Ribosomal (chemistry)</term>
<term>DNA, Ribosomal (genetics)</term>
<term>Ecosystem (MeSH)</term>
<term>Fungi (MeSH)</term>
<term>Genetic Variation (MeSH)</term>
<term>India (MeSH)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Mycorrhizae (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plants (microbiology)</term>
<term>RNA, Ribosomal, 23S (genetics)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Trees (microbiology)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ADN fongique (composition chimique)</term>
<term>ADN fongique (génétique)</term>
<term>ADN ribosomique (composition chimique)</term>
<term>ADN ribosomique (génétique)</term>
<term>ARN ribosomique 23S (génétique)</term>
<term>Afrique (MeSH)</term>
<term>Agaricales (MeSH)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Arbres (microbiologie)</term>
<term>Basidiomycota (classification)</term>
<term>Basidiomycota (génétique)</term>
<term>Basidiomycota (isolement et purification)</term>
<term>Biodiversité (MeSH)</term>
<term>Champignons (MeSH)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Inde (MeSH)</term>
<term>Mycorhizes (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
<term>Plantes (microbiologie)</term>
<term>Variation génétique (MeSH)</term>
<term>Écosystème (MeSH)</term>
</keywords>
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<term>DNA, Ribosomal</term>
</keywords>
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<term>DNA, Ribosomal</term>
<term>RNA, Ribosomal, 23S</term>
</keywords>
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<term>India</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Basidiomycota</term>
</keywords>
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<term>ADN ribosomique</term>
<term>Basidiomycota</term>
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</keywords>
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<term>ADN ribosomique</term>
<term>ARN ribosomique 23S</term>
<term>Basidiomycota</term>
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</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Basidiomycota</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Arbres</term>
<term>Plantes</term>
</keywords>
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<term>Trees</term>
</keywords>
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<term>Biodiversity</term>
<term>Ecosystem</term>
<term>Fungi</term>
<term>Genetic Variation</term>
<term>Molecular Sequence Data</term>
<term>Mycorrhizae</term>
<term>Phylogeny</term>
<term>Sequence Analysis, DNA</term>
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<term>Agaricales</term>
<term>Analyse de séquence d'ADN</term>
<term>Biodiversité</term>
<term>Champignons</term>
<term>Données de séquences moléculaires</term>
<term>Inde</term>
<term>Mycorhizes</term>
<term>Phylogenèse</term>
<term>Variation génétique</term>
<term>Écosystème</term>
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<front><div type="abstract" xml:lang="en">Ectomycorrhizal (ECM) fungi have a worldwide distribution. However, the ecology of tropical ECM fungi is poorly documented, limiting our understanding of the symbiotic associations between tropical plants and fungi. ECM Basidiomycete diversity was investigated for the first time in two tropical rain forests in Africa (Western Upper Guinea) and in Asia (Western Ghats, India), using a fragment of the mitochondrial large subunit rRNA gene to type 140 sporocarps and 54 ectomycorrhizas. To evaluate taxonomic diversity, phylogenetic analyses were performed, and 40 sequences included from identified European specimens were used as taxonomic benchmarks. Five clades were recovered corresponding to six taxonomic groups: boletoids, sclerodermatoids, russuloids, thelephoroids, and a clade grouping the Amanitaceae and Tricholomataceae families. Our results revealed that the Russulaceae species display a great diversity with several putative new species, especially in Guinea. Other taxonomic issues at family/section levels are also briefly discussed. This study provides preliminary insights into taxonomic diversity, ECM status, and biogeographic patterns of ECM fungi in tropical two rain forest ecosystems, which appear to be as diverse as in temperate and boreal forests.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17334790</PMID>
<DateCompleted><Year>2007</Year>
<Month>09</Month>
<Day>11</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0940-6360</ISSN>
<JournalIssue CitedMedium="Print"><Volume>17</Volume>
<Issue>5</Issue>
<PubDate><Year>2007</Year>
<Month>Jul</Month>
</PubDate>
</JournalIssue>
<Title>Mycorrhiza</Title>
<ISOAbbreviation>Mycorrhiza</ISOAbbreviation>
</Journal>
<ArticleTitle>Genetic diversity of ectomycorrhizal Basidiomycetes from African and Indian tropical rain forests.</ArticleTitle>
<Pagination><MedlinePgn>415-428</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1007/s00572-007-0117-6</ELocationID>
<Abstract><AbstractText>Ectomycorrhizal (ECM) fungi have a worldwide distribution. However, the ecology of tropical ECM fungi is poorly documented, limiting our understanding of the symbiotic associations between tropical plants and fungi. ECM Basidiomycete diversity was investigated for the first time in two tropical rain forests in Africa (Western Upper Guinea) and in Asia (Western Ghats, India), using a fragment of the mitochondrial large subunit rRNA gene to type 140 sporocarps and 54 ectomycorrhizas. To evaluate taxonomic diversity, phylogenetic analyses were performed, and 40 sequences included from identified European specimens were used as taxonomic benchmarks. Five clades were recovered corresponding to six taxonomic groups: boletoids, sclerodermatoids, russuloids, thelephoroids, and a clade grouping the Amanitaceae and Tricholomataceae families. Our results revealed that the Russulaceae species display a great diversity with several putative new species, especially in Guinea. Other taxonomic issues at family/section levels are also briefly discussed. This study provides preliminary insights into taxonomic diversity, ECM status, and biogeographic patterns of ECM fungi in tropical two rain forest ecosystems, which appear to be as diverse as in temperate and boreal forests.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Riviere</LastName>
<ForeName>Taiana</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France. taianariviere@yahoo.co.uk.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Institut Français de Pondichéry, 11 St Louis Street, Pondicherry, India. taianariviere@yahoo.co.uk.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Centre de Biologie pour la Gestion des Populations, Campus International de Baillarguet, CS 30016, 34988, Montferrier-sur-Lez cedex, France. taianariviere@yahoo.co.uk.</Affiliation>
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<Author ValidYN="Y"><LastName>Diedhiou</LastName>
<ForeName>Abdallah G</ForeName>
<Initials>AG</Initials>
<AffiliationInfo><Affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Diabate</LastName>
<ForeName>Moussa</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Institut de Recherche Agronomique de Guinée, Conakry, Guinea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Senthilarasu</LastName>
<ForeName>G</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Centre of Advanced Study in Botany (CASB), University of Madras, Chennai, India.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Natarajan</LastName>
<ForeName>K</ForeName>
<Initials>K</Initials>
<AffiliationInfo><Affiliation>Centre of Advanced Study in Botany (CASB), University of Madras, Chennai, India.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Verbeken</LastName>
<ForeName>Annemieke</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000, Ghent, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Buyck</LastName>
<ForeName>Bart</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>Muséum National d'Histoire Naturelle (MNHN), Cryptogamie, 12 rue Buffon, 75005, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Dreyfus</LastName>
<ForeName>Bernard</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bena</LastName>
<ForeName>Gilles</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ba</LastName>
<ForeName>Amadou M</ForeName>
<Initials>AM</Initials>
<AffiliationInfo><Affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Laboratoire de Biologie et Physiologie Végétales, Université Antilles-Guyane, BP. 592, 97159, Pointe-à-Pitre, Guadeloupe, France.</Affiliation>
</AffiliationInfo>
</Author>
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<ISSNLinking>0940-6360</ISSNLinking>
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<li>France</li>
<li>Guinée</li>
<li>Inde</li>
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<li>Occitanie (région administrative)</li>
<li>Province de Flandre-Orientale</li>
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<li>Île-de-France</li>
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<li>Montferrier-sur-Lez</li>
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<name sortKey="Riviere, Taiana" sort="Riviere, Taiana" uniqKey="Riviere T" first="Taiana" last="Riviere">Taiana Riviere</name>
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<country name="Inde"><noRegion><name sortKey="Riviere, Taiana" sort="Riviere, Taiana" uniqKey="Riviere T" first="Taiana" last="Riviere">Taiana Riviere</name>
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<name sortKey="Natarajan, K" sort="Natarajan, K" uniqKey="Natarajan K" first="K" last="Natarajan">K. Natarajan</name>
<name sortKey="Senthilarasu, G" sort="Senthilarasu, G" uniqKey="Senthilarasu G" first="G" last="Senthilarasu">G. Senthilarasu</name>
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<country name="Guinée"><noRegion><name sortKey="Diabate, Moussa" sort="Diabate, Moussa" uniqKey="Diabate M" first="Moussa" last="Diabate">Moussa Diabate</name>
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<country name="Belgique"><region name="Région flamande"><name sortKey="Verbeken, Annemieke" sort="Verbeken, Annemieke" uniqKey="Verbeken A" first="Annemieke" last="Verbeken">Annemieke Verbeken</name>
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   |texte=   Genetic diversity of ectomycorrhizal Basidiomycetes from African and Indian tropical rain forests.
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Genetic diversity of ectomycorrhizal Basidiomycetes from African and Indian tropical rain forests.

Genetic diversity of ectomycorrhizal Basidiomycetes from African and Indian tropical rain forests.

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