Genetic diversity of ectomycorrhizal Basidiomycetes from African and Indian tropical rain forests.
Identifieur interne : 003012 ( Main/Corpus ); précédent : 003011; suivant : 003013Genetic diversity of ectomycorrhizal Basidiomycetes from African and Indian tropical rain forests.
Auteurs : Taiana Riviere ; Abdallah G. Diedhiou ; Moussa Diabate ; G. Senthilarasu ; K. Natarajan ; Annemieke Verbeken ; Bart Buyck ; Bernard Dreyfus ; Gilles Bena ; Amadou M. BaSource :
- Mycorrhiza [ 0940-6360 ] ; 2007.
English descriptors
- KwdEn :
- Africa (MeSH), Agaricales (MeSH), Basidiomycota (classification), Basidiomycota (genetics), Basidiomycota (isolation & purification), Biodiversity (MeSH), DNA, Fungal (chemistry), DNA, Fungal (genetics), DNA, Ribosomal (chemistry), DNA, Ribosomal (genetics), Ecosystem (MeSH), Fungi (MeSH), Genetic Variation (MeSH), India (MeSH), Molecular Sequence Data (MeSH), Mycorrhizae (MeSH), Phylogeny (MeSH), Plants (microbiology), RNA, Ribosomal, 23S (genetics), Sequence Analysis, DNA (MeSH), Trees (microbiology).
- MESH :
- chemical , chemistry : DNA, Fungal, DNA, Ribosomal.
- chemical , genetics : DNA, Fungal, DNA, Ribosomal, RNA, Ribosomal, 23S.
- geographic : Africa, India.
- classification : Basidiomycota.
- genetics : Basidiomycota.
- isolation & purification : Basidiomycota.
- microbiology : Plants, Trees.
- Agaricales, Biodiversity, Ecosystem, Fungi, Genetic Variation, Molecular Sequence Data, Mycorrhizae, Phylogeny, Sequence Analysis, DNA.
Abstract
Ectomycorrhizal (ECM) fungi have a worldwide distribution. However, the ecology of tropical ECM fungi is poorly documented, limiting our understanding of the symbiotic associations between tropical plants and fungi. ECM Basidiomycete diversity was investigated for the first time in two tropical rain forests in Africa (Western Upper Guinea) and in Asia (Western Ghats, India), using a fragment of the mitochondrial large subunit rRNA gene to type 140 sporocarps and 54 ectomycorrhizas. To evaluate taxonomic diversity, phylogenetic analyses were performed, and 40 sequences included from identified European specimens were used as taxonomic benchmarks. Five clades were recovered corresponding to six taxonomic groups: boletoids, sclerodermatoids, russuloids, thelephoroids, and a clade grouping the Amanitaceae and Tricholomataceae families. Our results revealed that the Russulaceae species display a great diversity with several putative new species, especially in Guinea. Other taxonomic issues at family/section levels are also briefly discussed. This study provides preliminary insights into taxonomic diversity, ECM status, and biogeographic patterns of ECM fungi in tropical two rain forest ecosystems, which appear to be as diverse as in temperate and boreal forests.
DOI: 10.1007/s00572-007-0117-6
PubMed: 17334790
Links to Exploration step
pubmed:17334790Le document en format XML
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Diedhiou</name><affiliation><nlm:affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</nlm:affiliation></affiliation></author><author><name sortKey="Diabate, Moussa" sort="Diabate, Moussa" uniqKey="Diabate M" first="Moussa" last="Diabate">Moussa Diabate</name><affiliation><nlm:affiliation>Institut de Recherche Agronomique de Guinée, Conakry, Guinea.</nlm:affiliation></affiliation></author><author><name sortKey="Senthilarasu, G" sort="Senthilarasu, G" uniqKey="Senthilarasu G" first="G" last="Senthilarasu">G. Senthilarasu</name><affiliation><nlm:affiliation>Centre of Advanced Study in Botany (CASB), University of Madras, Chennai, India.</nlm:affiliation></affiliation></author><author><name sortKey="Natarajan, K" sort="Natarajan, K" uniqKey="Natarajan K" first="K" last="Natarajan">K. 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Ba</name><affiliation><nlm:affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Laboratoire de Biologie et Physiologie Végétales, Université Antilles-Guyane, BP. 592, 97159, Pointe-à-Pitre, Guadeloupe, France.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2007">2007</date><idno type="RBID">pubmed:17334790</idno><idno type="pmid">17334790</idno><idno type="doi">10.1007/s00572-007-0117-6</idno><idno type="wicri:Area/Main/Corpus">003012</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">003012</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic diversity of ectomycorrhizal Basidiomycetes from African and Indian tropical rain forests.</title><author><name sortKey="Riviere, Taiana" sort="Riviere, Taiana" uniqKey="Riviere T" first="Taiana" last="Riviere">Taiana Riviere</name><affiliation><nlm:affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France. taianariviere@yahoo.co.uk.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Institut Français de Pondichéry, 11 St Louis Street, Pondicherry, India. taianariviere@yahoo.co.uk.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Centre de Biologie pour la Gestion des Populations, Campus International de Baillarguet, CS 30016, 34988, Montferrier-sur-Lez cedex, France. taianariviere@yahoo.co.uk.</nlm:affiliation></affiliation></author><author><name sortKey="Diedhiou, Abdallah G" sort="Diedhiou, Abdallah G" uniqKey="Diedhiou A" first="Abdallah G" last="Diedhiou">Abdallah G. Diedhiou</name><affiliation><nlm:affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</nlm:affiliation></affiliation></author><author><name sortKey="Diabate, Moussa" sort="Diabate, Moussa" uniqKey="Diabate M" first="Moussa" last="Diabate">Moussa Diabate</name><affiliation><nlm:affiliation>Institut de Recherche Agronomique de Guinée, Conakry, Guinea.</nlm:affiliation></affiliation></author><author><name sortKey="Senthilarasu, G" sort="Senthilarasu, G" uniqKey="Senthilarasu G" first="G" last="Senthilarasu">G. Senthilarasu</name><affiliation><nlm:affiliation>Centre of Advanced Study in Botany (CASB), University of Madras, Chennai, India.</nlm:affiliation></affiliation></author><author><name sortKey="Natarajan, K" sort="Natarajan, K" uniqKey="Natarajan K" first="K" last="Natarajan">K. Natarajan</name><affiliation><nlm:affiliation>Centre of Advanced Study in Botany (CASB), University of Madras, Chennai, India.</nlm:affiliation></affiliation></author><author><name sortKey="Verbeken, Annemieke" sort="Verbeken, Annemieke" uniqKey="Verbeken A" first="Annemieke" last="Verbeken">Annemieke Verbeken</name><affiliation><nlm:affiliation>Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000, Ghent, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Buyck, Bart" sort="Buyck, Bart" uniqKey="Buyck B" first="Bart" last="Buyck">Bart Buyck</name><affiliation><nlm:affiliation>Muséum National d'Histoire Naturelle (MNHN), Cryptogamie, 12 rue Buffon, 75005, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Dreyfus, Bernard" sort="Dreyfus, Bernard" uniqKey="Dreyfus B" first="Bernard" last="Dreyfus">Bernard Dreyfus</name><affiliation><nlm:affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</nlm:affiliation></affiliation></author><author><name sortKey="Bena, Gilles" sort="Bena, Gilles" uniqKey="Bena G" first="Gilles" last="Bena">Gilles Bena</name><affiliation><nlm:affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</nlm:affiliation></affiliation></author><author><name sortKey="Ba, Amadou M" sort="Ba, Amadou M" uniqKey="Ba A" first="Amadou M" last="Ba">Amadou M. Ba</name><affiliation><nlm:affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Laboratoire de Biologie et Physiologie Végétales, Université Antilles-Guyane, BP. 592, 97159, Pointe-à-Pitre, Guadeloupe, France.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Mycorrhiza</title><idno type="ISSN">0940-6360</idno><imprint><date when="2007" type="published">2007</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Africa (MeSH)</term><term>Agaricales (MeSH)</term><term>Basidiomycota (classification)</term><term>Basidiomycota (genetics)</term><term>Basidiomycota (isolation & purification)</term><term>Biodiversity (MeSH)</term><term>DNA, Fungal (chemistry)</term><term>DNA, Fungal (genetics)</term><term>DNA, Ribosomal (chemistry)</term><term>DNA, Ribosomal (genetics)</term><term>Ecosystem (MeSH)</term><term>Fungi (MeSH)</term><term>Genetic Variation (MeSH)</term><term>India (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Mycorrhizae (MeSH)</term><term>Phylogeny (MeSH)</term><term>Plants (microbiology)</term><term>RNA, Ribosomal, 23S (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Trees (microbiology)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal</term><term>RNA, Ribosomal, 23S</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Africa</term><term>India</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plants</term><term>Trees</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Agaricales</term><term>Biodiversity</term><term>Ecosystem</term><term>Fungi</term><term>Genetic Variation</term><term>Molecular Sequence Data</term><term>Mycorrhizae</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Ectomycorrhizal (ECM) fungi have a worldwide distribution. However, the ecology of tropical ECM fungi is poorly documented, limiting our understanding of the symbiotic associations between tropical plants and fungi. ECM Basidiomycete diversity was investigated for the first time in two tropical rain forests in Africa (Western Upper Guinea) and in Asia (Western Ghats, India), using a fragment of the mitochondrial large subunit rRNA gene to type 140 sporocarps and 54 ectomycorrhizas. To evaluate taxonomic diversity, phylogenetic analyses were performed, and 40 sequences included from identified European specimens were used as taxonomic benchmarks. Five clades were recovered corresponding to six taxonomic groups: boletoids, sclerodermatoids, russuloids, thelephoroids, and a clade grouping the Amanitaceae and Tricholomataceae families. Our results revealed that the Russulaceae species display a great diversity with several putative new species, especially in Guinea. Other taxonomic issues at family/section levels are also briefly discussed. This study provides preliminary insights into taxonomic diversity, ECM status, and biogeographic patterns of ECM fungi in tropical two rain forest ecosystems, which appear to be as diverse as in temperate and boreal forests.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17334790</PMID><DateCompleted><Year>2007</Year><Month>09</Month><Day>11</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0940-6360</ISSN><JournalIssue CitedMedium="Print"><Volume>17</Volume><Issue>5</Issue><PubDate><Year>2007</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Mycorrhiza</Title><ISOAbbreviation>Mycorrhiza</ISOAbbreviation></Journal><ArticleTitle>Genetic diversity of ectomycorrhizal Basidiomycetes from African and Indian tropical rain forests.</ArticleTitle><Pagination><MedlinePgn>415-428</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00572-007-0117-6</ELocationID><Abstract><AbstractText>Ectomycorrhizal (ECM) fungi have a worldwide distribution. However, the ecology of tropical ECM fungi is poorly documented, limiting our understanding of the symbiotic associations between tropical plants and fungi. ECM Basidiomycete diversity was investigated for the first time in two tropical rain forests in Africa (Western Upper Guinea) and in Asia (Western Ghats, India), using a fragment of the mitochondrial large subunit rRNA gene to type 140 sporocarps and 54 ectomycorrhizas. To evaluate taxonomic diversity, phylogenetic analyses were performed, and 40 sequences included from identified European specimens were used as taxonomic benchmarks. Five clades were recovered corresponding to six taxonomic groups: boletoids, sclerodermatoids, russuloids, thelephoroids, and a clade grouping the Amanitaceae and Tricholomataceae families. Our results revealed that the Russulaceae species display a great diversity with several putative new species, especially in Guinea. Other taxonomic issues at family/section levels are also briefly discussed. This study provides preliminary insights into taxonomic diversity, ECM status, and biogeographic patterns of ECM fungi in tropical two rain forest ecosystems, which appear to be as diverse as in temperate and boreal forests.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Riviere</LastName><ForeName>Taiana</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France. taianariviere@yahoo.co.uk.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institut Français de Pondichéry, 11 St Louis Street, Pondicherry, India. taianariviere@yahoo.co.uk.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre de Biologie pour la Gestion des Populations, Campus International de Baillarguet, CS 30016, 34988, Montferrier-sur-Lez cedex, France. taianariviere@yahoo.co.uk.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Diedhiou</LastName><ForeName>Abdallah G</ForeName><Initials>AG</Initials><AffiliationInfo><Affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Diabate</LastName><ForeName>Moussa</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Institut de Recherche Agronomique de Guinée, Conakry, Guinea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Senthilarasu</LastName><ForeName>G</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Centre of Advanced Study in Botany (CASB), University of Madras, Chennai, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Natarajan</LastName><ForeName>K</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Centre of Advanced Study in Botany (CASB), University of Madras, Chennai, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Verbeken</LastName><ForeName>Annemieke</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000, Ghent, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Buyck</LastName><ForeName>Bart</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Muséum National d'Histoire Naturelle (MNHN), Cryptogamie, 12 rue Buffon, 75005, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dreyfus</LastName><ForeName>Bernard</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bena</LastName><ForeName>Gilles</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ba</LastName><ForeName>Amadou M</ForeName><Initials>AM</Initials><AffiliationInfo><Affiliation>UMR 113, Symbioses Tropicales et Méditerranéennes (LSTM), 34998, Montferrier-sur-Lez, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratoire de Biologie et Physiologie Végétales, Université Antilles-Guyane, BP. 592, 97159, Pointe-à-Pitre, Guadeloupe, France.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList 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UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2007</Year><Month>03</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Mycorrhiza</MedlineTA><NlmUniqueID>100955036</NlmUniqueID><ISSNLinking>0940-6360</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012338">RNA, Ribosomal, 23S</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000349" MajorTopicYN="N" 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