Serveur d'exploration sur la mycorhize

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Combined genetic and transcriptomic analysis reveals three major signalling pathways activated by Myc-LCOs in Medicago truncatula.

Identifieur interne : 001659 ( Main/Exploration ); précédent : 001658; suivant : 001660

Combined genetic and transcriptomic analysis reveals three major signalling pathways activated by Myc-LCOs in Medicago truncatula.

Auteurs : Céline Camps [France] ; Marie-Françoise Jardinaud [France] ; David Rengel [France] ; Sébastien Carrère [France] ; Christine Hervé [France] ; Frédéric Debellé [France] ; Pascal Gamas [France] ; Sandra Bensmihen [France] ; Clare Gough [France]

Source :

RBID : pubmed:25919491

Descripteurs français

English descriptors

Abstract

Myc-LCOs are newly identified symbiotic signals produced by arbuscular mycorrhizal (AM) fungi. Like rhizobial Nod factors, they are lipo-chitooligosaccharides that activate the common symbiotic signalling pathway (CSSP) in plants. To increase our limited understanding of the roles of Myc-LCOs we aimed to analyse Myc-LCO-induced transcriptional changes and their genetic control. Whole genome RNA sequencing (RNA-seq) was performed on roots of Medicago truncatula wild-type plants, and dmi3 and nsp1 symbiotic mutants affected in nodulation and mycorrhizal signalling. Plants were treated separately with the two major types of Myc-LCOs, sulphated and nonsulphated. Generalized linear model analysis identified 2201 differentially expressed genes and classified them according to genotype and/or treatment effects. Three genetic pathways for Myc-LCO-regulation of transcriptomic reprogramming were highlighted: DMI3- and NSP1-dependent; DMI3-dependent and NSP1-independent; and DMI3- and NSP1-independent. Comprehensive analysis revealed overlaps with previous AM studies, and highlighted certain functions, especially signalling components and transcription factors. These data provide new insights into mycorrhizal signalling mechanisms, supporting a role for NSP1, and specialisation for NSP1-dependent and -independent pathways downstream of DMI3. Our data also indicate significant Myc-LCO-activated signalling upstream of DMI3 and/or parallel to the CSSP and some constitutive activity of the CSSP.

DOI: 10.1111/nph.13427
PubMed: 25919491


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<country xml:lang="fr">France</country>
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<name sortKey="Debelle, Frederic" sort="Debelle, Frederic" uniqKey="Debelle F" first="Frédéric" last="Debellé">Frédéric Debellé</name>
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<name sortKey="Gamas, Pascal" sort="Gamas, Pascal" uniqKey="Gamas P" first="Pascal" last="Gamas">Pascal Gamas</name>
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<country xml:lang="fr">France</country>
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<country xml:lang="fr">France</country>
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<author>
<name sortKey="Bensmihen, Sandra" sort="Bensmihen, Sandra" uniqKey="Bensmihen S" first="Sandra" last="Bensmihen">Sandra Bensmihen</name>
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<author>
<name sortKey="Gough, Clare" sort="Gough, Clare" uniqKey="Gough C" first="Clare" last="Gough">Clare Gough</name>
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<nlm:affiliation>INRA, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR441, F-31326, Castanet-Tolosan, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
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<series>
<title level="j">The New phytologist</title>
<idno type="eISSN">1469-8137</idno>
<imprint>
<date when="2015" type="published">2015</date>
</imprint>
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<keywords scheme="KwdEn" xml:lang="en">
<term>Chitin (analogs & derivatives)</term>
<term>Chitin (metabolism)</term>
<term>Chitin (pharmacology)</term>
<term>Fungal Polysaccharides (metabolism)</term>
<term>Fungal Polysaccharides (pharmacology)</term>
<term>Fungi (metabolism)</term>
<term>Gene Expression Regulation, Plant (drug effects)</term>
<term>Genes, Plant (MeSH)</term>
<term>Genotype (MeSH)</term>
<term>Medicago truncatula (drug effects)</term>
<term>Medicago truncatula (genetics)</term>
<term>Medicago truncatula (metabolism)</term>
<term>Medicago truncatula (microbiology)</term>
<term>Mutation (MeSH)</term>
<term>Mycorrhizae (MeSH)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Plant Roots (drug effects)</term>
<term>Plant Roots (metabolism)</term>
<term>Plant Roots (microbiology)</term>
<term>Sequence Analysis, RNA (MeSH)</term>
<term>Signal Transduction (MeSH)</term>
<term>Symbiosis (genetics)</term>
<term>Transcription Factors (metabolism)</term>
<term>Transcriptome (drug effects)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>Analyse de séquence d'ARN (MeSH)</term>
<term>Champignons (métabolisme)</term>
<term>Chitine (analogues et dérivés)</term>
<term>Chitine (métabolisme)</term>
<term>Chitine (pharmacologie)</term>
<term>Facteurs de transcription (métabolisme)</term>
<term>Gènes de plante (MeSH)</term>
<term>Génotype (MeSH)</term>
<term>Medicago truncatula (effets des médicaments et des substances chimiques)</term>
<term>Medicago truncatula (génétique)</term>
<term>Medicago truncatula (microbiologie)</term>
<term>Medicago truncatula (métabolisme)</term>
<term>Mutation (MeSH)</term>
<term>Mycorhizes (MeSH)</term>
<term>Polysaccharides fongiques (métabolisme)</term>
<term>Polysaccharides fongiques (pharmacologie)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Racines de plante (effets des médicaments et des substances chimiques)</term>
<term>Racines de plante (microbiologie)</term>
<term>Racines de plante (métabolisme)</term>
<term>Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques)</term>
<term>Symbiose (génétique)</term>
<term>Transcriptome (effets des médicaments et des substances chimiques)</term>
<term>Transduction du signal (MeSH)</term>
</keywords>
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<term>Chitin</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>Plant Proteins</term>
</keywords>
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<term>Chitin</term>
<term>Fungal Polysaccharides</term>
<term>Plant Proteins</term>
<term>Transcription Factors</term>
</keywords>
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<term>Chitin</term>
<term>Fungal Polysaccharides</term>
</keywords>
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<term>Chitine</term>
</keywords>
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<term>Gene Expression Regulation, Plant</term>
<term>Medicago truncatula</term>
<term>Plant Roots</term>
<term>Transcriptome</term>
</keywords>
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<term>Medicago truncatula</term>
<term>Racines de plante</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Transcriptome</term>
</keywords>
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<term>Medicago truncatula</term>
<term>Symbiosis</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>Medicago truncatula</term>
<term>Protéines végétales</term>
<term>Symbiose</term>
</keywords>
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<term>Fungi</term>
<term>Medicago truncatula</term>
<term>Plant Roots</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr">
<term>Medicago truncatula</term>
<term>Racines de plante</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en">
<term>Medicago truncatula</term>
<term>Plant Roots</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr">
<term>Champignons</term>
<term>Chitine</term>
<term>Facteurs de transcription</term>
<term>Medicago truncatula</term>
<term>Polysaccharides fongiques</term>
<term>Protéines végétales</term>
<term>Racines de plante</term>
</keywords>
<keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr">
<term>Chitine</term>
<term>Polysaccharides fongiques</term>
</keywords>
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<term>Genes, Plant</term>
<term>Genotype</term>
<term>Mutation</term>
<term>Mycorrhizae</term>
<term>Sequence Analysis, RNA</term>
<term>Signal Transduction</term>
</keywords>
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<term>Analyse de séquence d'ARN</term>
<term>Gènes de plante</term>
<term>Génotype</term>
<term>Mutation</term>
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<front>
<div type="abstract" xml:lang="en">Myc-LCOs are newly identified symbiotic signals produced by arbuscular mycorrhizal (AM) fungi. Like rhizobial Nod factors, they are lipo-chitooligosaccharides that activate the common symbiotic signalling pathway (CSSP) in plants. To increase our limited understanding of the roles of Myc-LCOs we aimed to analyse Myc-LCO-induced transcriptional changes and their genetic control. Whole genome RNA sequencing (RNA-seq) was performed on roots of Medicago truncatula wild-type plants, and dmi3 and nsp1 symbiotic mutants affected in nodulation and mycorrhizal signalling. Plants were treated separately with the two major types of Myc-LCOs, sulphated and nonsulphated. Generalized linear model analysis identified 2201 differentially expressed genes and classified them according to genotype and/or treatment effects. Three genetic pathways for Myc-LCO-regulation of transcriptomic reprogramming were highlighted: DMI3- and NSP1-dependent; DMI3-dependent and NSP1-independent; and DMI3- and NSP1-independent. Comprehensive analysis revealed overlaps with previous AM studies, and highlighted certain functions, especially signalling components and transcription factors. These data provide new insights into mycorrhizal signalling mechanisms, supporting a role for NSP1, and specialisation for NSP1-dependent and -independent pathways downstream of DMI3. Our data also indicate significant Myc-LCO-activated signalling upstream of DMI3 and/or parallel to the CSSP and some constitutive activity of the CSSP. </div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="MEDLINE" Owner="NLM">
<PMID Version="1">25919491</PMID>
<DateCompleted>
<Year>2016</Year>
<Month>06</Month>
<Day>01</Day>
</DateCompleted>
<DateRevised>
<Year>2020</Year>
<Month>09</Month>
<Day>30</Day>
</DateRevised>
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<Journal>
<ISSN IssnType="Electronic">1469-8137</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>208</Volume>
<Issue>1</Issue>
<PubDate>
<Year>2015</Year>
<Month>Oct</Month>
</PubDate>
</JournalIssue>
<Title>The New phytologist</Title>
<ISOAbbreviation>New Phytol</ISOAbbreviation>
</Journal>
<ArticleTitle>Combined genetic and transcriptomic analysis reveals three major signalling pathways activated by Myc-LCOs in Medicago truncatula.</ArticleTitle>
<Pagination>
<MedlinePgn>224-40</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1111/nph.13427</ELocationID>
<Abstract>
<AbstractText>Myc-LCOs are newly identified symbiotic signals produced by arbuscular mycorrhizal (AM) fungi. Like rhizobial Nod factors, they are lipo-chitooligosaccharides that activate the common symbiotic signalling pathway (CSSP) in plants. To increase our limited understanding of the roles of Myc-LCOs we aimed to analyse Myc-LCO-induced transcriptional changes and their genetic control. Whole genome RNA sequencing (RNA-seq) was performed on roots of Medicago truncatula wild-type plants, and dmi3 and nsp1 symbiotic mutants affected in nodulation and mycorrhizal signalling. Plants were treated separately with the two major types of Myc-LCOs, sulphated and nonsulphated. Generalized linear model analysis identified 2201 differentially expressed genes and classified them according to genotype and/or treatment effects. Three genetic pathways for Myc-LCO-regulation of transcriptomic reprogramming were highlighted: DMI3- and NSP1-dependent; DMI3-dependent and NSP1-independent; and DMI3- and NSP1-independent. Comprehensive analysis revealed overlaps with previous AM studies, and highlighted certain functions, especially signalling components and transcription factors. These data provide new insights into mycorrhizal signalling mechanisms, supporting a role for NSP1, and specialisation for NSP1-dependent and -independent pathways downstream of DMI3. Our data also indicate significant Myc-LCO-activated signalling upstream of DMI3 and/or parallel to the CSSP and some constitutive activity of the CSSP. </AbstractText>
<CopyrightInformation>© 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.</CopyrightInformation>
</Abstract>
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<Author ValidYN="Y">
<LastName>Camps</LastName>
<ForeName>Céline</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>INRA, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR441, F-31326, Castanet-Tolosan, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>CNRS, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR2594, F-31326, Castanet-Tolosan, France.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y">
<LastName>Jardinaud</LastName>
<ForeName>Marie-Françoise</ForeName>
<Initials>MF</Initials>
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<Affiliation>INRA, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR441, F-31326, Castanet-Tolosan, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>CNRS, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR2594, F-31326, Castanet-Tolosan, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>INPT-Université de Toulouse, ENSAT, Avenue de l'Agrobiopole, Auzeville-Tolosane, F-31326, Castanet-Tolosan, France.</Affiliation>
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<LastName>Rengel</LastName>
<ForeName>David</ForeName>
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<LastName>Carrère</LastName>
<ForeName>Sébastien</ForeName>
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<Affiliation>INRA, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR441, F-31326, Castanet-Tolosan, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>CNRS, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR2594, F-31326, Castanet-Tolosan, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Hervé</LastName>
<ForeName>Christine</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>INRA, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR441, F-31326, Castanet-Tolosan, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>CNRS, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR2594, F-31326, Castanet-Tolosan, France.</Affiliation>
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<Author ValidYN="Y">
<LastName>Debellé</LastName>
<ForeName>Frédéric</ForeName>
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</AffiliationInfo>
<AffiliationInfo>
<Affiliation>CNRS, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR2594, F-31326, Castanet-Tolosan, France.</Affiliation>
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<LastName>Gamas</LastName>
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<AffiliationInfo>
<Affiliation>CNRS, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR2594, F-31326, Castanet-Tolosan, France.</Affiliation>
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<LastName>Bensmihen</LastName>
<ForeName>Sandra</ForeName>
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<AffiliationInfo>
<Affiliation>INRA, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR441, F-31326, Castanet-Tolosan, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>CNRS, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR2594, F-31326, Castanet-Tolosan, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Gough</LastName>
<ForeName>Clare</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>INRA, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR441, F-31326, Castanet-Tolosan, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>CNRS, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR2594, F-31326, Castanet-Tolosan, France.</Affiliation>
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<NameOfSubstance UI="C493484">oligochitosan</NameOfSubstance>
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<MeshHeading>
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<MeshHeading>
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<MeshHeading>
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<MeshHeading>
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<MeshHeading>
<DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName>
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<MeshHeading>
<DescriptorName UI="D046913" MajorTopicYN="N">Medicago truncatula</DescriptorName>
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</MeshHeading>
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<MeshHeading>
<DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
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</MeshHeading>
<MeshHeading>
<DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName>
<QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D017423" MajorTopicYN="N">Sequence Analysis, RNA</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D015398" MajorTopicYN="N">Signal Transduction</DescriptorName>
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<MeshHeading>
<DescriptorName UI="D013559" MajorTopicYN="N">Symbiosis</DescriptorName>
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</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">Medicago truncatula</Keyword>
<Keyword MajorTopicYN="N">Symbiosis</Keyword>
<Keyword MajorTopicYN="N">Transcriptomics</Keyword>
<Keyword MajorTopicYN="N">arbuscular mycorrhizal (AM) fungi</Keyword>
<Keyword MajorTopicYN="N">common symbiotic signalling pathway (CSSP)</Keyword>
<Keyword MajorTopicYN="N">lipo-chitooligosaccharides (LCOs)</Keyword>
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<PubMedPubDate PubStatus="received">
<Year>2014</Year>
<Month>12</Month>
<Day>18</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2015</Year>
<Month>03</Month>
<Day>25</Day>
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<Month>4</Month>
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<li>France</li>
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<region>
<li>Midi-Pyrénées</li>
<li>Occitanie (région administrative)</li>
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<li>Castanet-Tolosan</li>
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</list>
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<name sortKey="Camps, Celine" sort="Camps, Celine" uniqKey="Camps C" first="Céline" last="Camps">Céline Camps</name>
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<name sortKey="Bensmihen, Sandra" sort="Bensmihen, Sandra" uniqKey="Bensmihen S" first="Sandra" last="Bensmihen">Sandra Bensmihen</name>
<name sortKey="Bensmihen, Sandra" sort="Bensmihen, Sandra" uniqKey="Bensmihen S" first="Sandra" last="Bensmihen">Sandra Bensmihen</name>
<name sortKey="Camps, Celine" sort="Camps, Celine" uniqKey="Camps C" first="Céline" last="Camps">Céline Camps</name>
<name sortKey="Carrere, Sebastien" sort="Carrere, Sebastien" uniqKey="Carrere S" first="Sébastien" last="Carrère">Sébastien Carrère</name>
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<name sortKey="Debelle, Frederic" sort="Debelle, Frederic" uniqKey="Debelle F" first="Frédéric" last="Debellé">Frédéric Debellé</name>
<name sortKey="Debelle, Frederic" sort="Debelle, Frederic" uniqKey="Debelle F" first="Frédéric" last="Debellé">Frédéric Debellé</name>
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<name sortKey="Gamas, Pascal" sort="Gamas, Pascal" uniqKey="Gamas P" first="Pascal" last="Gamas">Pascal Gamas</name>
<name sortKey="Gough, Clare" sort="Gough, Clare" uniqKey="Gough C" first="Clare" last="Gough">Clare Gough</name>
<name sortKey="Gough, Clare" sort="Gough, Clare" uniqKey="Gough C" first="Clare" last="Gough">Clare Gough</name>
<name sortKey="Herve, Christine" sort="Herve, Christine" uniqKey="Herve C" first="Christine" last="Hervé">Christine Hervé</name>
<name sortKey="Herve, Christine" sort="Herve, Christine" uniqKey="Herve C" first="Christine" last="Hervé">Christine Hervé</name>
<name sortKey="Jardinaud, Marie Francoise" sort="Jardinaud, Marie Francoise" uniqKey="Jardinaud M" first="Marie-Françoise" last="Jardinaud">Marie-Françoise Jardinaud</name>
<name sortKey="Jardinaud, Marie Francoise" sort="Jardinaud, Marie Francoise" uniqKey="Jardinaud M" first="Marie-Françoise" last="Jardinaud">Marie-Françoise Jardinaud</name>
<name sortKey="Jardinaud, Marie Francoise" sort="Jardinaud, Marie Francoise" uniqKey="Jardinaud M" first="Marie-Françoise" last="Jardinaud">Marie-Françoise Jardinaud</name>
<name sortKey="Rengel, David" sort="Rengel, David" uniqKey="Rengel D" first="David" last="Rengel">David Rengel</name>
<name sortKey="Rengel, David" sort="Rengel, David" uniqKey="Rengel D" first="David" last="Rengel">David Rengel</name>
</country>
</tree>
</affiliations>
</record>

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