Ectomycorrhizal fungal community in alkaline-saline soil in northeastern China.
Identifieur interne : 002B11 ( Main/Corpus ); précédent : 002B10; suivant : 002B12Ectomycorrhizal fungal community in alkaline-saline soil in northeastern China.
Auteurs : Takahide A. Ishida ; Kazuhide Nara ; Shurong Ma ; Tetsuo Takano ; Shenkui LiuSource :
- Mycorrhiza [ 1432-1890 ] ; 2009.
English descriptors
- KwdEn :
- Ascomycota (classification), Ascomycota (genetics), Ascomycota (isolation & purification), Basidiomycota (classification), Basidiomycota (genetics), Basidiomycota (isolation & purification), China (MeSH), DNA, Fungal (genetics), DNA, Ribosomal Spacer (genetics), Hydrogen-Ion Concentration (MeSH), Molecular Sequence Data (MeSH), Mycorrhizae (classification), Mycorrhizae (genetics), Mycorrhizae (isolation & purification), Phylogeny (MeSH), Plant Roots (microbiology), Salix (microbiology), Soil (analysis), Soil Microbiology (MeSH).
- MESH :
- chemical , analysis : Soil.
- chemical , genetics : DNA, Fungal, DNA, Ribosomal Spacer.
- classification : Ascomycota, Basidiomycota, Mycorrhizae.
- genetics : Ascomycota, Basidiomycota, Mycorrhizae.
- isolation & purification : Ascomycota, Basidiomycota, Mycorrhizae.
- microbiology : Plant Roots, Salix.
- China, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, Soil Microbiology.
Abstract
Alkaline-saline soil is widespread in arid and semiarid regions of the world and causes severe environmental and agricultural problems. To advance our understanding of the adaptation of ectomycorrhizal fungi (EMF) to alkaline-saline soil, we investigated EMF communities on Mongolian willow (Salix linearistipularis) growing in alkaline-saline soil (up to pH 9.2) in northeastern China. In total, 75 root samples were collected from 25 willow individuals over 4.7 ha. To identify fungal species in ectomycorrhizal root tips, we used terminal restriction fragment length polymorphism and sequencing analyses of the internal transcribed spacer region of ribosomal DNA. We detected 11 EMF species, including species of Inocybe, Hebeloma, and Tomentella of the Basidiomycota and three Ascomycota species. The EMF richness of the study site was estimated to be 15-17 using major estimators. The most abundant species was Geopora sp. 1, while no Geopora-dominated EMF communities have been reported so far. Phylogenetic analysis showed that the phylogroup including Geopora sp. 1 has been found mostly in alkaline soil habitats, indicating its adaptation to high soil pH. Because EMF are indispensable for host plant growth, the EMF species detected in this study may be useful for restoration of alkaline-saline areas.
DOI: 10.1007/s00572-008-0219-9
PubMed: 19104846
Links to Exploration step
pubmed:19104846Le document en format XML
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Ishida</name><affiliation><nlm:affiliation>Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, 188-0002, Japan. ishida@anesc.u-tokyo.ac.jp.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Umeå Plant Science Centre, The Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden. ishida@anesc.u-tokyo.ac.jp.</nlm:affiliation></affiliation></author><author><name sortKey="Nara, Kazuhide" sort="Nara, Kazuhide" uniqKey="Nara K" first="Kazuhide" last="Nara">Kazuhide Nara</name><affiliation><nlm:affiliation>Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, 188-0002, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Ma, Shurong" sort="Ma, Shurong" uniqKey="Ma S" first="Shurong" last="Ma">Shurong Ma</name><affiliation><nlm:affiliation>Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, 150040, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Takano, Tetsuo" sort="Takano, Tetsuo" uniqKey="Takano T" first="Tetsuo" last="Takano">Tetsuo Takano</name><affiliation><nlm:affiliation>Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, 188-0002, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Liu, Shenkui" sort="Liu, Shenkui" uniqKey="Liu S" first="Shenkui" last="Liu">Shenkui Liu</name><affiliation><nlm:affiliation>Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, 188-0002, Japan.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, 150040, People's Republic of China.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2009">2009</date><idno type="RBID">pubmed:19104846</idno><idno type="pmid">19104846</idno><idno type="doi">10.1007/s00572-008-0219-9</idno><idno type="wicri:Area/Main/Corpus">002B11</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">002B11</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Ectomycorrhizal fungal community in alkaline-saline soil in northeastern China.</title><author><name sortKey="Ishida, Takahide A" sort="Ishida, Takahide A" uniqKey="Ishida T" first="Takahide A" last="Ishida">Takahide A. Ishida</name><affiliation><nlm:affiliation>Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, 188-0002, Japan. ishida@anesc.u-tokyo.ac.jp.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Umeå Plant Science Centre, The Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden. ishida@anesc.u-tokyo.ac.jp.</nlm:affiliation></affiliation></author><author><name sortKey="Nara, Kazuhide" sort="Nara, Kazuhide" uniqKey="Nara K" first="Kazuhide" last="Nara">Kazuhide Nara</name><affiliation><nlm:affiliation>Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, 188-0002, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Ma, Shurong" sort="Ma, Shurong" uniqKey="Ma S" first="Shurong" last="Ma">Shurong Ma</name><affiliation><nlm:affiliation>Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, 150040, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Takano, Tetsuo" sort="Takano, Tetsuo" uniqKey="Takano T" first="Tetsuo" last="Takano">Tetsuo Takano</name><affiliation><nlm:affiliation>Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, 188-0002, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Liu, Shenkui" sort="Liu, Shenkui" uniqKey="Liu S" first="Shenkui" last="Liu">Shenkui Liu</name><affiliation><nlm:affiliation>Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, 188-0002, Japan.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, 150040, People's Republic of China.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Mycorrhiza</title><idno type="eISSN">1432-1890</idno><imprint><date when="2009" type="published">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ascomycota (classification)</term><term>Ascomycota (genetics)</term><term>Ascomycota (isolation & purification)</term><term>Basidiomycota (classification)</term><term>Basidiomycota (genetics)</term><term>Basidiomycota (isolation & purification)</term><term>China (MeSH)</term><term>DNA, Fungal (genetics)</term><term>DNA, Ribosomal Spacer (genetics)</term><term>Hydrogen-Ion Concentration (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Mycorrhizae (classification)</term><term>Mycorrhizae (genetics)</term><term>Mycorrhizae (isolation & purification)</term><term>Phylogeny (MeSH)</term><term>Plant Roots (microbiology)</term><term>Salix (microbiology)</term><term>Soil (analysis)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>Soil</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal Spacer</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Ascomycota</term><term>Basidiomycota</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Ascomycota</term><term>Basidiomycota</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Ascomycota</term><term>Basidiomycota</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Roots</term><term>Salix</term></keywords><keywords scheme="MESH" xml:lang="en"><term>China</term><term>Hydrogen-Ion Concentration</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Soil Microbiology</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Alkaline-saline soil is widespread in arid and semiarid regions of the world and causes severe environmental and agricultural problems. To advance our understanding of the adaptation of ectomycorrhizal fungi (EMF) to alkaline-saline soil, we investigated EMF communities on Mongolian willow (Salix linearistipularis) growing in alkaline-saline soil (up to pH 9.2) in northeastern China. In total, 75 root samples were collected from 25 willow individuals over 4.7 ha. To identify fungal species in ectomycorrhizal root tips, we used terminal restriction fragment length polymorphism and sequencing analyses of the internal transcribed spacer region of ribosomal DNA. We detected 11 EMF species, including species of Inocybe, Hebeloma, and Tomentella of the Basidiomycota and three Ascomycota species. The EMF richness of the study site was estimated to be 15-17 using major estimators. The most abundant species was Geopora sp. 1, while no Geopora-dominated EMF communities have been reported so far. Phylogenetic analysis showed that the phylogroup including Geopora sp. 1 has been found mostly in alkaline soil habitats, indicating its adaptation to high soil pH. Because EMF are indispensable for host plant growth, the EMF species detected in this study may be useful for restoration of alkaline-saline areas.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">19104846</PMID><DateCompleted><Year>2009</Year><Month>06</Month><Day>12</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-1890</ISSN><JournalIssue CitedMedium="Internet"><Volume>19</Volume><Issue>5</Issue><PubDate><Year>2009</Year><Month>Jun</Month></PubDate></JournalIssue><Title>Mycorrhiza</Title><ISOAbbreviation>Mycorrhiza</ISOAbbreviation></Journal><ArticleTitle>Ectomycorrhizal fungal community in alkaline-saline soil in northeastern China.</ArticleTitle><Pagination><MedlinePgn>329-335</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00572-008-0219-9</ELocationID><Abstract><AbstractText>Alkaline-saline soil is widespread in arid and semiarid regions of the world and causes severe environmental and agricultural problems. To advance our understanding of the adaptation of ectomycorrhizal fungi (EMF) to alkaline-saline soil, we investigated EMF communities on Mongolian willow (Salix linearistipularis) growing in alkaline-saline soil (up to pH 9.2) in northeastern China. In total, 75 root samples were collected from 25 willow individuals over 4.7 ha. To identify fungal species in ectomycorrhizal root tips, we used terminal restriction fragment length polymorphism and sequencing analyses of the internal transcribed spacer region of ribosomal DNA. We detected 11 EMF species, including species of Inocybe, Hebeloma, and Tomentella of the Basidiomycota and three Ascomycota species. The EMF richness of the study site was estimated to be 15-17 using major estimators. The most abundant species was Geopora sp. 1, while no Geopora-dominated EMF communities have been reported so far. Phylogenetic analysis showed that the phylogroup including Geopora sp. 1 has been found mostly in alkaline soil habitats, indicating its adaptation to high soil pH. Because EMF are indispensable for host plant growth, the EMF species detected in this study may be useful for restoration of alkaline-saline areas.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ishida</LastName><ForeName>Takahide A</ForeName><Initials>TA</Initials><AffiliationInfo><Affiliation>Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, 188-0002, Japan. ishida@anesc.u-tokyo.ac.jp.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Umeå Plant Science Centre, The Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden. ishida@anesc.u-tokyo.ac.jp.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nara</LastName><ForeName>Kazuhide</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, 188-0002, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ma</LastName><ForeName>Shurong</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, 150040, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Takano</LastName><ForeName>Tetsuo</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, 188-0002, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Shenkui</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, 188-0002, Japan.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, 150040, People's Republic of China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2008</Year><Month>12</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Mycorrhiza</MedlineTA><NlmUniqueID>100955036</NlmUniqueID><ISSNLinking>0940-6360</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D021903">DNA, Ribosomal Spacer</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance 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