Carbon availability triggers the decomposition of plant litter and assimilation of nitrogen by an ectomycorrhizal fungus.
Identifieur interne : 001B83 ( Main/Corpus ); précédent : 001B82; suivant : 001B84Carbon availability triggers the decomposition of plant litter and assimilation of nitrogen by an ectomycorrhizal fungus.
Auteurs : F. Rineau ; F. Shah ; M M Smits ; P. Persson ; T. Johansson ; R. Carleer ; C. Troein ; A. TunlidSource :
- The ISME journal [ 1751-7370 ] ; 2013.
English descriptors
- KwdEn :
- Agaricales (enzymology), Agaricales (genetics), Agaricales (metabolism), Carbon (metabolism), Carbon (pharmacology), Enzymes (genetics), Enzymes (metabolism), Gene Expression Profiling (MeSH), Gene Expression Regulation, Fungal (drug effects), Mycorrhizae (enzymology), Mycorrhizae (genetics), Mycorrhizae (metabolism), Nitrogen (metabolism), Nitrogen (pharmacology), Plants (metabolism), Plants (microbiology), Soil (chemistry), Soil Microbiology (MeSH), Spectroscopy, Fourier Transform Infrared (MeSH).
- MESH :
- chemical , chemistry : Soil.
- chemical , genetics : Enzymes.
- chemical , metabolism : Carbon, Enzymes, Nitrogen.
- drug effects : Gene Expression Regulation, Fungal.
- enzymology : Agaricales, Mycorrhizae.
- genetics : Agaricales, Mycorrhizae.
- metabolism : Agaricales, Mycorrhizae, Plants.
- microbiology : Plants.
- chemical , pharmacology : Carbon, Nitrogen.
- Gene Expression Profiling, Soil Microbiology, Spectroscopy, Fourier Transform Infrared.
Abstract
The majority of nitrogen in forest soils is found in organic matter-protein complexes. Ectomycorrhizal fungi (EMF) are thought to have a key role in decomposing and mobilizing nitrogen from such complexes. However, little is known about the mechanisms governing these processes, how they are regulated by the carbon in the host plant and the availability of more easily available forms of nitrogen sources. Here we used spectroscopic analyses and transcriptome profiling to examine how the presence or absence of glucose and/or ammonium regulates decomposition of litter material and nitrogen mobilization by the ectomycorrhizal fungus Paxillus involutus. We found that the assimilation of nitrogen and the decomposition of the litter material are triggered by the addition of glucose. Glucose addition also resulted in upregulation of the expression of genes encoding enzymes involved in oxidative degradation of polysaccharides and polyphenols, peptidases, nitrogen transporters and enzymes in pathways of the nitrogen and carbon metabolism. In contrast, the addition of ammonium to organic matter had relatively minor effects on the expression of transcripts and the decomposition of litter material, occurring only when glucose was present. On the basis of spectroscopic analyses, three major types of chemical modifications of the litter material were observed, each correlated with the expression of specific sets of genes encoding extracellular enzymes. Our data suggest that the expression of the decomposition and nitrogen assimilation processes of EMF can be tightly regulated by the host carbon supply and that the availability of inorganic nitrogen as such has limited effects on saprotrophic activities.
DOI: 10.1038/ismej.2013.91
PubMed: 23788332
PubMed Central: PMC3965319
Links to Exploration step
pubmed:23788332Le document en format XML
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Johansson</name></author><author><name sortKey="Carleer, R" sort="Carleer, R" uniqKey="Carleer R" first="R" last="Carleer">R. Carleer</name></author><author><name sortKey="Troein, C" sort="Troein, C" uniqKey="Troein C" first="C" last="Troein">C. Troein</name></author><author><name sortKey="Tunlid, A" sort="Tunlid, A" uniqKey="Tunlid A" first="A" last="Tunlid">A. 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Tunlid</name></author></analytic><series><title level="j">The ISME journal</title><idno type="eISSN">1751-7370</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Agaricales (enzymology)</term><term>Agaricales (genetics)</term><term>Agaricales (metabolism)</term><term>Carbon (metabolism)</term><term>Carbon (pharmacology)</term><term>Enzymes (genetics)</term><term>Enzymes (metabolism)</term><term>Gene Expression Profiling (MeSH)</term><term>Gene Expression Regulation, Fungal (drug effects)</term><term>Mycorrhizae (enzymology)</term><term>Mycorrhizae (genetics)</term><term>Mycorrhizae (metabolism)</term><term>Nitrogen (metabolism)</term><term>Nitrogen (pharmacology)</term><term>Plants (metabolism)</term><term>Plants (microbiology)</term><term>Soil (chemistry)</term><term>Soil Microbiology (MeSH)</term><term>Spectroscopy, Fourier Transform Infrared (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Soil</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Enzymes</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Carbon</term><term>Enzymes</term><term>Nitrogen</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Gene Expression Regulation, Fungal</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Agaricales</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Agaricales</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Agaricales</term><term>Mycorrhizae</term><term>Plants</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plants</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Carbon</term><term>Nitrogen</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term><term>Soil Microbiology</term><term>Spectroscopy, Fourier Transform Infrared</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The majority of nitrogen in forest soils is found in organic matter-protein complexes. Ectomycorrhizal fungi (EMF) are thought to have a key role in decomposing and mobilizing nitrogen from such complexes. However, little is known about the mechanisms governing these processes, how they are regulated by the carbon in the host plant and the availability of more easily available forms of nitrogen sources. Here we used spectroscopic analyses and transcriptome profiling to examine how the presence or absence of glucose and/or ammonium regulates decomposition of litter material and nitrogen mobilization by the ectomycorrhizal fungus Paxillus involutus. We found that the assimilation of nitrogen and the decomposition of the litter material are triggered by the addition of glucose. Glucose addition also resulted in upregulation of the expression of genes encoding enzymes involved in oxidative degradation of polysaccharides and polyphenols, peptidases, nitrogen transporters and enzymes in pathways of the nitrogen and carbon metabolism. In contrast, the addition of ammonium to organic matter had relatively minor effects on the expression of transcripts and the decomposition of litter material, occurring only when glucose was present. On the basis of spectroscopic analyses, three major types of chemical modifications of the litter material were observed, each correlated with the expression of specific sets of genes encoding extracellular enzymes. Our data suggest that the expression of the decomposition and nitrogen assimilation processes of EMF can be tightly regulated by the host carbon supply and that the availability of inorganic nitrogen as such has limited effects on saprotrophic activities. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">23788332</PMID><DateCompleted><Year>2014</Year><Month>02</Month><Day>04</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1751-7370</ISSN><JournalIssue CitedMedium="Internet"><Volume>7</Volume><Issue>10</Issue><PubDate><Year>2013</Year><Month>Oct</Month></PubDate></JournalIssue><Title>The ISME journal</Title><ISOAbbreviation>ISME J</ISOAbbreviation></Journal><ArticleTitle>Carbon availability triggers the decomposition of plant litter and assimilation of nitrogen by an ectomycorrhizal fungus.</ArticleTitle><Pagination><MedlinePgn>2010-22</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/ismej.2013.91</ELocationID><Abstract><AbstractText>The majority of nitrogen in forest soils is found in organic matter-protein complexes. Ectomycorrhizal fungi (EMF) are thought to have a key role in decomposing and mobilizing nitrogen from such complexes. However, little is known about the mechanisms governing these processes, how they are regulated by the carbon in the host plant and the availability of more easily available forms of nitrogen sources. Here we used spectroscopic analyses and transcriptome profiling to examine how the presence or absence of glucose and/or ammonium regulates decomposition of litter material and nitrogen mobilization by the ectomycorrhizal fungus Paxillus involutus. We found that the assimilation of nitrogen and the decomposition of the litter material are triggered by the addition of glucose. Glucose addition also resulted in upregulation of the expression of genes encoding enzymes involved in oxidative degradation of polysaccharides and polyphenols, peptidases, nitrogen transporters and enzymes in pathways of the nitrogen and carbon metabolism. In contrast, the addition of ammonium to organic matter had relatively minor effects on the expression of transcripts and the decomposition of litter material, occurring only when glucose was present. On the basis of spectroscopic analyses, three major types of chemical modifications of the litter material were observed, each correlated with the expression of specific sets of genes encoding extracellular enzymes. Our data suggest that the expression of the decomposition and nitrogen assimilation processes of EMF can be tightly regulated by the host carbon supply and that the availability of inorganic nitrogen as such has limited effects on saprotrophic activities. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rineau</LastName><ForeName>F</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Environmental Biology Group, Centre for Environmental Sciences, Hasselt University, Agoralaan, Diepenbeek, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shah</LastName><ForeName>F</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Smits</LastName><ForeName>M M</ForeName><Initials>MM</Initials></Author><Author ValidYN="Y"><LastName>Persson</LastName><ForeName>P</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Johansson</LastName><ForeName>T</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Carleer</LastName><ForeName>R</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Troein</LastName><ForeName>C</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Tunlid</LastName><ForeName>A</ForeName><Initials>A</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>06</Month><Day>20</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>ISME J</MedlineTA><NlmUniqueID>101301086</NlmUniqueID><ISSNLinking>1751-7362</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004798">Enzymes</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance 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