Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.
Identifieur interne : 001543 ( Main/Corpus ); précédent : 001542; suivant : 001544Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.
Auteurs : Annegret Kohler ; Alan Kuo ; Laszlo G. Nagy ; Emmanuelle Morin ; Kerrie W. Barry ; Francois Buscot ; Björn Canb Ck ; Cindy Choi ; Nicolas Cichocki ; Alicia Clum ; Jan Colpaert ; Alex Copeland ; Mauricio D. Costa ; Jeanne Doré ; Dimitrios Floudas ; Gilles Gay ; Mariangela Girlanda ; Bernard Henrissat ; Sylvie Herrmann ; Jaqueline Hess ; Nils Högberg ; Tomas Johansson ; Hassine-Radhouane Khouja ; Kurt Labutti ; Urs Lahrmann ; Anthony Levasseur ; Erika A. Lindquist ; Anna Lipzen ; Roland Marmeisse ; Elena Martino ; Claude Murat ; Chew Y. Ngan ; Uwe Nehls ; Jonathan M. Plett ; Anne Pringle ; Robin A. Ohm ; Silvia Perotto ; Martina Peter ; Robert Riley ; Francois Rineau ; Joske Ruytinx ; Asaf Salamov ; Firoz Shah ; Hui Sun ; Mika Tarkka ; Andrew Tritt ; Claire Veneault-Fourrey ; Alga Zuccaro ; Anders Tunlid ; Igor V. Grigoriev ; David S. Hibbett ; Francis MartinSource :
- Nature genetics [ 1546-1718 ] ; 2015.
English descriptors
- KwdEn :
- Base Sequence (MeSH), Evolution, Molecular (MeSH), Gene Deletion (MeSH), Gene Expression Regulation, Fungal (genetics), Genome, Fungal (genetics), Molecular Sequence Data (MeSH), Mycorrhizae (genetics), Mycorrhizae (pathogenicity), Phylogeny (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), Plant Roots (microbiology), Selection, Genetic (MeSH), Symbiosis (genetics), Virulence (genetics).
- MESH :
- genetics : Gene Expression Regulation, Fungal, Genome, Fungal, Mycorrhizae, Plant Diseases, Symbiosis, Virulence.
- microbiology : Plant Diseases, Plant Roots.
- pathogenicity : Mycorrhizae.
- Base Sequence, Evolution, Molecular, Gene Deletion, Molecular Sequence Data, Phylogeny, Selection, Genetic.
Abstract
To elucidate the genetic bases of mycorrhizal lifestyle evolution, we sequenced new fungal genomes, including 13 ectomycorrhizal (ECM), orchid (ORM) and ericoid (ERM) species, and five saprotrophs, which we analyzed along with other fungal genomes. Ectomycorrhizal fungi have a reduced complement of genes encoding plant cell wall-degrading enzymes (PCWDEs), as compared to their ancestral wood decayers. Nevertheless, they have retained a unique array of PCWDEs, thus suggesting that they possess diverse abilities to decompose lignocellulose. Similar functional categories of nonorthologous genes are induced in symbiosis. Of induced genes, 7-38% are orphan genes, including genes that encode secreted effector-like proteins. Convergent evolution of the mycorrhizal habit in fungi occurred via the repeated evolution of a 'symbiosis toolkit', with reduced numbers of PCWDEs and lineage-specific suites of mycorrhiza-induced genes.
DOI: 10.1038/ng.3223
PubMed: 25706625
Links to Exploration step
pubmed:25706625Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.</title><author><name sortKey="Kohler, Annegret" sort="Kohler, Annegret" uniqKey="Kohler A" first="Annegret" last="Kohler">Annegret Kohler</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Kuo, Alan" sort="Kuo, Alan" uniqKey="Kuo A" first="Alan" last="Kuo">Alan Kuo</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Nagy, Laszlo G" sort="Nagy, Laszlo G" uniqKey="Nagy L" first="Laszlo G" last="Nagy">Laszlo G. Nagy</name><affiliation><nlm:affiliation>1] Department of Biology, Clark University, Worcester, Massachusetts, USA. [2] Synthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary.</nlm:affiliation></affiliation></author><author><name sortKey="Morin, Emmanuelle" sort="Morin, Emmanuelle" uniqKey="Morin E" first="Emmanuelle" last="Morin">Emmanuelle Morin</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Barry, Kerrie W" sort="Barry, Kerrie W" uniqKey="Barry K" first="Kerrie W" last="Barry">Kerrie W. Barry</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Buscot, Francois" sort="Buscot, Francois" uniqKey="Buscot F" first="Francois" last="Buscot">Francois Buscot</name><affiliation><nlm:affiliation>1] Department of Soil Ecology, Helmholtz Centre for Environmental Research-Helmholtz Zentrum fuer Umweltforschung, Halle, Germany. [2] German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Canb Ck, Bjorn" sort="Canb Ck, Bjorn" uniqKey="Canb Ck B" first="Björn" last="Canb Ck">Björn Canb Ck</name><affiliation><nlm:affiliation>Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Choi, Cindy" sort="Choi, Cindy" uniqKey="Choi C" first="Cindy" last="Choi">Cindy Choi</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Cichocki, Nicolas" sort="Cichocki, Nicolas" uniqKey="Cichocki N" first="Nicolas" last="Cichocki">Nicolas Cichocki</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Clum, Alicia" sort="Clum, Alicia" uniqKey="Clum A" first="Alicia" last="Clum">Alicia Clum</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Colpaert, Jan" sort="Colpaert, Jan" uniqKey="Colpaert J" first="Jan" last="Colpaert">Jan Colpaert</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Copeland, Alex" sort="Copeland, Alex" uniqKey="Copeland A" first="Alex" last="Copeland">Alex Copeland</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Costa, Mauricio D" sort="Costa, Mauricio D" uniqKey="Costa M" first="Mauricio D" last="Costa">Mauricio D. Costa</name><affiliation><nlm:affiliation>Departamento de Microbiologia, Bolsista do Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Universidade Federal de Viçosa, Viçosa, Brazil.</nlm:affiliation></affiliation></author><author><name sortKey="Dore, Jeanne" sort="Dore, Jeanne" uniqKey="Dore J" first="Jeanne" last="Doré">Jeanne Doré</name><affiliation><nlm:affiliation>UMR CNRS 5557, Unité Sous Contrat INRA 1364, Université de Lyon, Université Lyon 1, Villeurbanne, France.</nlm:affiliation></affiliation></author><author><name sortKey="Floudas, Dimitrios" sort="Floudas, Dimitrios" uniqKey="Floudas D" first="Dimitrios" last="Floudas">Dimitrios Floudas</name><affiliation><nlm:affiliation>Department of Biology, Clark University, Worcester, Massachusetts, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Gay, Gilles" sort="Gay, Gilles" uniqKey="Gay G" first="Gilles" last="Gay">Gilles Gay</name><affiliation><nlm:affiliation>UMR CNRS 5557, Unité Sous Contrat INRA 1364, Université de Lyon, Université Lyon 1, Villeurbanne, France.</nlm:affiliation></affiliation></author><author><name sortKey="Girlanda, Mariangela" sort="Girlanda, Mariangela" uniqKey="Girlanda M" first="Mariangela" last="Girlanda">Mariangela Girlanda</name><affiliation><nlm:affiliation>Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name><affiliation><nlm:affiliation>1] CNRS, UMR 7257, Aix-Marseille Université, Marseille, France. [2] Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, Marseille, France. [3] Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.</nlm:affiliation></affiliation></author><author><name sortKey="Herrmann, Sylvie" sort="Herrmann, Sylvie" uniqKey="Herrmann S" first="Sylvie" last="Herrmann">Sylvie Herrmann</name><affiliation><nlm:affiliation>1] Department of Soil Ecology, Helmholtz Centre for Environmental Research-Helmholtz Zentrum fuer Umweltforschung, Halle, Germany. [2] German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Hess, Jaqueline" sort="Hess, Jaqueline" uniqKey="Hess J" first="Jaqueline" last="Hess">Jaqueline Hess</name><affiliation><nlm:affiliation>Department of Biosciences, University of Oslo, Oslo, Norway.</nlm:affiliation></affiliation></author><author><name sortKey="Hogberg, Nils" sort="Hogberg, Nils" uniqKey="Hogberg N" first="Nils" last="Högberg">Nils Högberg</name><affiliation><nlm:affiliation>Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Johansson, Tomas" sort="Johansson, Tomas" uniqKey="Johansson T" first="Tomas" last="Johansson">Tomas Johansson</name><affiliation><nlm:affiliation>Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Khouja, Hassine Radhouane" sort="Khouja, Hassine Radhouane" uniqKey="Khouja H" first="Hassine-Radhouane" last="Khouja">Hassine-Radhouane Khouja</name><affiliation><nlm:affiliation>Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Labutti, Kurt" sort="Labutti, Kurt" uniqKey="Labutti K" first="Kurt" last="Labutti">Kurt Labutti</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Lahrmann, Urs" sort="Lahrmann, Urs" uniqKey="Lahrmann U" first="Urs" last="Lahrmann">Urs Lahrmann</name><affiliation><nlm:affiliation>Department of Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Levasseur, Anthony" sort="Levasseur, Anthony" uniqKey="Levasseur A" first="Anthony" last="Levasseur">Anthony Levasseur</name><affiliation><nlm:affiliation>CNRS, UMR 7257, Aix-Marseille Université, Marseille, France.</nlm:affiliation></affiliation></author><author><name sortKey="Lindquist, Erika A" sort="Lindquist, Erika A" uniqKey="Lindquist E" first="Erika A" last="Lindquist">Erika A. Lindquist</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Lipzen, Anna" sort="Lipzen, Anna" uniqKey="Lipzen A" first="Anna" last="Lipzen">Anna Lipzen</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Marmeisse, Roland" sort="Marmeisse, Roland" uniqKey="Marmeisse R" first="Roland" last="Marmeisse">Roland Marmeisse</name><affiliation><nlm:affiliation>UMR CNRS 5557, Unité Sous Contrat INRA 1364, Université de Lyon, Université Lyon 1, Villeurbanne, France.</nlm:affiliation></affiliation></author><author><name sortKey="Martino, Elena" sort="Martino, Elena" uniqKey="Martino E" first="Elena" last="Martino">Elena Martino</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Murat, Claude" sort="Murat, Claude" uniqKey="Murat C" first="Claude" last="Murat">Claude Murat</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Ngan, Chew Y" sort="Ngan, Chew Y" uniqKey="Ngan C" first="Chew Y" last="Ngan">Chew Y. Ngan</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Nehls, Uwe" sort="Nehls, Uwe" uniqKey="Nehls U" first="Uwe" last="Nehls">Uwe Nehls</name><affiliation><nlm:affiliation>Department of Ecology, Biology/Chemistry, Botany, University of Bremen, Bremen, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Plett, Jonathan M" sort="Plett, Jonathan M" uniqKey="Plett J" first="Jonathan M" last="Plett">Jonathan M. Plett</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Pringle, Anne" sort="Pringle, Anne" uniqKey="Pringle A" first="Anne" last="Pringle">Anne Pringle</name><affiliation><nlm:affiliation>Harvard Forest, Harvard University, Petersham, Massachusetts, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Ohm, Robin A" sort="Ohm, Robin A" uniqKey="Ohm R" first="Robin A" last="Ohm">Robin A. Ohm</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Perotto, Silvia" sort="Perotto, Silvia" uniqKey="Perotto S" first="Silvia" last="Perotto">Silvia Perotto</name><affiliation><nlm:affiliation>Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Peter, Martina" sort="Peter, Martina" uniqKey="Peter M" first="Martina" last="Peter">Martina Peter</name><affiliation><nlm:affiliation>Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Forest Dynamics, Birmensdorf, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Riley, Robert" sort="Riley, Robert" uniqKey="Riley R" first="Robert" last="Riley">Robert Riley</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Rineau, Francois" sort="Rineau, Francois" uniqKey="Rineau F" first="Francois" last="Rineau">Francois Rineau</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Ruytinx, Joske" sort="Ruytinx, Joske" uniqKey="Ruytinx J" first="Joske" last="Ruytinx">Joske Ruytinx</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Salamov, Asaf" sort="Salamov, Asaf" uniqKey="Salamov A" first="Asaf" last="Salamov">Asaf Salamov</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Shah, Firoz" sort="Shah, Firoz" uniqKey="Shah F" first="Firoz" last="Shah">Firoz Shah</name><affiliation><nlm:affiliation>Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Sun, Hui" sort="Sun, Hui" uniqKey="Sun H" first="Hui" last="Sun">Hui Sun</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Tarkka, Mika" sort="Tarkka, Mika" uniqKey="Tarkka M" first="Mika" last="Tarkka">Mika Tarkka</name><affiliation><nlm:affiliation>1] Department of Soil Ecology, Helmholtz Centre for Environmental Research-Helmholtz Zentrum fuer Umweltforschung, Halle, Germany. [2] German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Tritt, Andrew" sort="Tritt, Andrew" uniqKey="Tritt A" first="Andrew" last="Tritt">Andrew Tritt</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Veneault Fourrey, Claire" sort="Veneault Fourrey, Claire" uniqKey="Veneault Fourrey C" first="Claire" last="Veneault-Fourrey">Claire Veneault-Fourrey</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Zuccaro, Alga" sort="Zuccaro, Alga" uniqKey="Zuccaro A" first="Alga" last="Zuccaro">Alga Zuccaro</name><affiliation><nlm:affiliation>1] Department of Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany. [2] University of Cologne, Botanical Institute, Cluster of Excellence on Plant Sciences (CEPLAS), Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Tunlid, Anders" sort="Tunlid, Anders" uniqKey="Tunlid A" first="Anders" last="Tunlid">Anders Tunlid</name><affiliation><nlm:affiliation>Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Hibbett, David S" sort="Hibbett, David S" uniqKey="Hibbett D" first="David S" last="Hibbett">David S. Hibbett</name><affiliation><nlm:affiliation>Department of Biology, Clark University, Worcester, Massachusetts, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Martin, Francis" sort="Martin, Francis" uniqKey="Martin F" first="Francis" last="Martin">Francis Martin</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:25706625</idno><idno type="pmid">25706625</idno><idno type="doi">10.1038/ng.3223</idno><idno type="wicri:Area/Main/Corpus">001543</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001543</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.</title><author><name sortKey="Kohler, Annegret" sort="Kohler, Annegret" uniqKey="Kohler A" first="Annegret" last="Kohler">Annegret Kohler</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Kuo, Alan" sort="Kuo, Alan" uniqKey="Kuo A" first="Alan" last="Kuo">Alan Kuo</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Nagy, Laszlo G" sort="Nagy, Laszlo G" uniqKey="Nagy L" first="Laszlo G" last="Nagy">Laszlo G. Nagy</name><affiliation><nlm:affiliation>1] Department of Biology, Clark University, Worcester, Massachusetts, USA. [2] Synthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary.</nlm:affiliation></affiliation></author><author><name sortKey="Morin, Emmanuelle" sort="Morin, Emmanuelle" uniqKey="Morin E" first="Emmanuelle" last="Morin">Emmanuelle Morin</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Barry, Kerrie W" sort="Barry, Kerrie W" uniqKey="Barry K" first="Kerrie W" last="Barry">Kerrie W. Barry</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Buscot, Francois" sort="Buscot, Francois" uniqKey="Buscot F" first="Francois" last="Buscot">Francois Buscot</name><affiliation><nlm:affiliation>1] Department of Soil Ecology, Helmholtz Centre for Environmental Research-Helmholtz Zentrum fuer Umweltforschung, Halle, Germany. [2] German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Canb Ck, Bjorn" sort="Canb Ck, Bjorn" uniqKey="Canb Ck B" first="Björn" last="Canb Ck">Björn Canb Ck</name><affiliation><nlm:affiliation>Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Choi, Cindy" sort="Choi, Cindy" uniqKey="Choi C" first="Cindy" last="Choi">Cindy Choi</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Cichocki, Nicolas" sort="Cichocki, Nicolas" uniqKey="Cichocki N" first="Nicolas" last="Cichocki">Nicolas Cichocki</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Clum, Alicia" sort="Clum, Alicia" uniqKey="Clum A" first="Alicia" last="Clum">Alicia Clum</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Colpaert, Jan" sort="Colpaert, Jan" uniqKey="Colpaert J" first="Jan" last="Colpaert">Jan Colpaert</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Copeland, Alex" sort="Copeland, Alex" uniqKey="Copeland A" first="Alex" last="Copeland">Alex Copeland</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Costa, Mauricio D" sort="Costa, Mauricio D" uniqKey="Costa M" first="Mauricio D" last="Costa">Mauricio D. Costa</name><affiliation><nlm:affiliation>Departamento de Microbiologia, Bolsista do Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Universidade Federal de Viçosa, Viçosa, Brazil.</nlm:affiliation></affiliation></author><author><name sortKey="Dore, Jeanne" sort="Dore, Jeanne" uniqKey="Dore J" first="Jeanne" last="Doré">Jeanne Doré</name><affiliation><nlm:affiliation>UMR CNRS 5557, Unité Sous Contrat INRA 1364, Université de Lyon, Université Lyon 1, Villeurbanne, France.</nlm:affiliation></affiliation></author><author><name sortKey="Floudas, Dimitrios" sort="Floudas, Dimitrios" uniqKey="Floudas D" first="Dimitrios" last="Floudas">Dimitrios Floudas</name><affiliation><nlm:affiliation>Department of Biology, Clark University, Worcester, Massachusetts, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Gay, Gilles" sort="Gay, Gilles" uniqKey="Gay G" first="Gilles" last="Gay">Gilles Gay</name><affiliation><nlm:affiliation>UMR CNRS 5557, Unité Sous Contrat INRA 1364, Université de Lyon, Université Lyon 1, Villeurbanne, France.</nlm:affiliation></affiliation></author><author><name sortKey="Girlanda, Mariangela" sort="Girlanda, Mariangela" uniqKey="Girlanda M" first="Mariangela" last="Girlanda">Mariangela Girlanda</name><affiliation><nlm:affiliation>Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name><affiliation><nlm:affiliation>1] CNRS, UMR 7257, Aix-Marseille Université, Marseille, France. [2] Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, Marseille, France. [3] Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.</nlm:affiliation></affiliation></author><author><name sortKey="Herrmann, Sylvie" sort="Herrmann, Sylvie" uniqKey="Herrmann S" first="Sylvie" last="Herrmann">Sylvie Herrmann</name><affiliation><nlm:affiliation>1] Department of Soil Ecology, Helmholtz Centre for Environmental Research-Helmholtz Zentrum fuer Umweltforschung, Halle, Germany. [2] German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Hess, Jaqueline" sort="Hess, Jaqueline" uniqKey="Hess J" first="Jaqueline" last="Hess">Jaqueline Hess</name><affiliation><nlm:affiliation>Department of Biosciences, University of Oslo, Oslo, Norway.</nlm:affiliation></affiliation></author><author><name sortKey="Hogberg, Nils" sort="Hogberg, Nils" uniqKey="Hogberg N" first="Nils" last="Högberg">Nils Högberg</name><affiliation><nlm:affiliation>Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Johansson, Tomas" sort="Johansson, Tomas" uniqKey="Johansson T" first="Tomas" last="Johansson">Tomas Johansson</name><affiliation><nlm:affiliation>Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Khouja, Hassine Radhouane" sort="Khouja, Hassine Radhouane" uniqKey="Khouja H" first="Hassine-Radhouane" last="Khouja">Hassine-Radhouane Khouja</name><affiliation><nlm:affiliation>Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Labutti, Kurt" sort="Labutti, Kurt" uniqKey="Labutti K" first="Kurt" last="Labutti">Kurt Labutti</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Lahrmann, Urs" sort="Lahrmann, Urs" uniqKey="Lahrmann U" first="Urs" last="Lahrmann">Urs Lahrmann</name><affiliation><nlm:affiliation>Department of Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Levasseur, Anthony" sort="Levasseur, Anthony" uniqKey="Levasseur A" first="Anthony" last="Levasseur">Anthony Levasseur</name><affiliation><nlm:affiliation>CNRS, UMR 7257, Aix-Marseille Université, Marseille, France.</nlm:affiliation></affiliation></author><author><name sortKey="Lindquist, Erika A" sort="Lindquist, Erika A" uniqKey="Lindquist E" first="Erika A" last="Lindquist">Erika A. Lindquist</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Lipzen, Anna" sort="Lipzen, Anna" uniqKey="Lipzen A" first="Anna" last="Lipzen">Anna Lipzen</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Marmeisse, Roland" sort="Marmeisse, Roland" uniqKey="Marmeisse R" first="Roland" last="Marmeisse">Roland Marmeisse</name><affiliation><nlm:affiliation>UMR CNRS 5557, Unité Sous Contrat INRA 1364, Université de Lyon, Université Lyon 1, Villeurbanne, France.</nlm:affiliation></affiliation></author><author><name sortKey="Martino, Elena" sort="Martino, Elena" uniqKey="Martino E" first="Elena" last="Martino">Elena Martino</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Murat, Claude" sort="Murat, Claude" uniqKey="Murat C" first="Claude" last="Murat">Claude Murat</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Ngan, Chew Y" sort="Ngan, Chew Y" uniqKey="Ngan C" first="Chew Y" last="Ngan">Chew Y. Ngan</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Nehls, Uwe" sort="Nehls, Uwe" uniqKey="Nehls U" first="Uwe" last="Nehls">Uwe Nehls</name><affiliation><nlm:affiliation>Department of Ecology, Biology/Chemistry, Botany, University of Bremen, Bremen, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Plett, Jonathan M" sort="Plett, Jonathan M" uniqKey="Plett J" first="Jonathan M" last="Plett">Jonathan M. Plett</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Pringle, Anne" sort="Pringle, Anne" uniqKey="Pringle A" first="Anne" last="Pringle">Anne Pringle</name><affiliation><nlm:affiliation>Harvard Forest, Harvard University, Petersham, Massachusetts, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Ohm, Robin A" sort="Ohm, Robin A" uniqKey="Ohm R" first="Robin A" last="Ohm">Robin A. Ohm</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Perotto, Silvia" sort="Perotto, Silvia" uniqKey="Perotto S" first="Silvia" last="Perotto">Silvia Perotto</name><affiliation><nlm:affiliation>Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Peter, Martina" sort="Peter, Martina" uniqKey="Peter M" first="Martina" last="Peter">Martina Peter</name><affiliation><nlm:affiliation>Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Forest Dynamics, Birmensdorf, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Riley, Robert" sort="Riley, Robert" uniqKey="Riley R" first="Robert" last="Riley">Robert Riley</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Rineau, Francois" sort="Rineau, Francois" uniqKey="Rineau F" first="Francois" last="Rineau">Francois Rineau</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Ruytinx, Joske" sort="Ruytinx, Joske" uniqKey="Ruytinx J" first="Joske" last="Ruytinx">Joske Ruytinx</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Salamov, Asaf" sort="Salamov, Asaf" uniqKey="Salamov A" first="Asaf" last="Salamov">Asaf Salamov</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Shah, Firoz" sort="Shah, Firoz" uniqKey="Shah F" first="Firoz" last="Shah">Firoz Shah</name><affiliation><nlm:affiliation>Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Sun, Hui" sort="Sun, Hui" uniqKey="Sun H" first="Hui" last="Sun">Hui Sun</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Tarkka, Mika" sort="Tarkka, Mika" uniqKey="Tarkka M" first="Mika" last="Tarkka">Mika Tarkka</name><affiliation><nlm:affiliation>1] Department of Soil Ecology, Helmholtz Centre for Environmental Research-Helmholtz Zentrum fuer Umweltforschung, Halle, Germany. [2] German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Tritt, Andrew" sort="Tritt, Andrew" uniqKey="Tritt A" first="Andrew" last="Tritt">Andrew Tritt</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Veneault Fourrey, Claire" sort="Veneault Fourrey, Claire" uniqKey="Veneault Fourrey C" first="Claire" last="Veneault-Fourrey">Claire Veneault-Fourrey</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Zuccaro, Alga" sort="Zuccaro, Alga" uniqKey="Zuccaro A" first="Alga" last="Zuccaro">Alga Zuccaro</name><affiliation><nlm:affiliation>1] Department of Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany. [2] University of Cologne, Botanical Institute, Cluster of Excellence on Plant Sciences (CEPLAS), Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Tunlid, Anders" sort="Tunlid, Anders" uniqKey="Tunlid A" first="Anders" last="Tunlid">Anders Tunlid</name><affiliation><nlm:affiliation>Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Hibbett, David S" sort="Hibbett, David S" uniqKey="Hibbett D" first="David S" last="Hibbett">David S. Hibbett</name><affiliation><nlm:affiliation>Department of Biology, Clark University, Worcester, Massachusetts, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Martin, Francis" sort="Martin, Francis" uniqKey="Martin F" first="Francis" last="Martin">Francis Martin</name><affiliation><nlm:affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Nature genetics</title><idno type="eISSN">1546-1718</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence (MeSH)</term><term>Evolution, Molecular (MeSH)</term><term>Gene Deletion (MeSH)</term><term>Gene Expression Regulation, Fungal (genetics)</term><term>Genome, Fungal (genetics)</term><term>Molecular Sequence Data (MeSH)</term><term>Mycorrhizae (genetics)</term><term>Mycorrhizae (pathogenicity)</term><term>Phylogeny (MeSH)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (microbiology)</term><term>Plant Roots (microbiology)</term><term>Selection, Genetic (MeSH)</term><term>Symbiosis (genetics)</term><term>Virulence (genetics)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Gene Expression Regulation, Fungal</term><term>Genome, Fungal</term><term>Mycorrhizae</term><term>Plant Diseases</term><term>Symbiosis</term><term>Virulence</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Plant Roots</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Evolution, Molecular</term><term>Gene Deletion</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Selection, Genetic</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">To elucidate the genetic bases of mycorrhizal lifestyle evolution, we sequenced new fungal genomes, including 13 ectomycorrhizal (ECM), orchid (ORM) and ericoid (ERM) species, and five saprotrophs, which we analyzed along with other fungal genomes. Ectomycorrhizal fungi have a reduced complement of genes encoding plant cell wall-degrading enzymes (PCWDEs), as compared to their ancestral wood decayers. Nevertheless, they have retained a unique array of PCWDEs, thus suggesting that they possess diverse abilities to decompose lignocellulose. Similar functional categories of nonorthologous genes are induced in symbiosis. Of induced genes, 7-38% are orphan genes, including genes that encode secreted effector-like proteins. Convergent evolution of the mycorrhizal habit in fungi occurred via the repeated evolution of a 'symbiosis toolkit', with reduced numbers of PCWDEs and lineage-specific suites of mycorrhiza-induced genes. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25706625</PMID><DateCompleted><Year>2015</Year><Month>06</Month><Day>12</Day></DateCompleted><DateRevised><Year>2018</Year><Month>08</Month><Day>08</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1546-1718</ISSN><JournalIssue CitedMedium="Internet"><Volume>47</Volume><Issue>4</Issue><PubDate><Year>2015</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Nature genetics</Title><ISOAbbreviation>Nat Genet</ISOAbbreviation></Journal><ArticleTitle>Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.</ArticleTitle><Pagination><MedlinePgn>410-5</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/ng.3223</ELocationID><Abstract><AbstractText>To elucidate the genetic bases of mycorrhizal lifestyle evolution, we sequenced new fungal genomes, including 13 ectomycorrhizal (ECM), orchid (ORM) and ericoid (ERM) species, and five saprotrophs, which we analyzed along with other fungal genomes. Ectomycorrhizal fungi have a reduced complement of genes encoding plant cell wall-degrading enzymes (PCWDEs), as compared to their ancestral wood decayers. Nevertheless, they have retained a unique array of PCWDEs, thus suggesting that they possess diverse abilities to decompose lignocellulose. Similar functional categories of nonorthologous genes are induced in symbiosis. Of induced genes, 7-38% are orphan genes, including genes that encode secreted effector-like proteins. Convergent evolution of the mycorrhizal habit in fungi occurred via the repeated evolution of a 'symbiosis toolkit', with reduced numbers of PCWDEs and lineage-specific suites of mycorrhiza-induced genes. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kohler</LastName><ForeName>Annegret</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kuo</LastName><ForeName>Alan</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nagy</LastName><ForeName>Laszlo G</ForeName><Initials>LG</Initials><AffiliationInfo><Affiliation>1] Department of Biology, Clark University, Worcester, Massachusetts, USA. [2] Synthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Morin</LastName><ForeName>Emmanuelle</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Barry</LastName><ForeName>Kerrie W</ForeName><Initials>KW</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Buscot</LastName><ForeName>Francois</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>1] Department of Soil Ecology, Helmholtz Centre for Environmental Research-Helmholtz Zentrum fuer Umweltforschung, Halle, Germany. [2] German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Canbäck</LastName><ForeName>Björn</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Choi</LastName><ForeName>Cindy</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cichocki</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Clum</LastName><ForeName>Alicia</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Colpaert</LastName><ForeName>Jan</ForeName><Initials>J</Initials><Identifier Source="ORCID">0000000316101861</Identifier><AffiliationInfo><Affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Copeland</LastName><ForeName>Alex</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Costa</LastName><ForeName>Mauricio D</ForeName><Initials>MD</Initials><AffiliationInfo><Affiliation>Departamento de Microbiologia, Bolsista do Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Universidade Federal de Viçosa, Viçosa, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Doré</LastName><ForeName>Jeanne</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>UMR CNRS 5557, Unité Sous Contrat INRA 1364, Université de Lyon, Université Lyon 1, Villeurbanne, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Floudas</LastName><ForeName>Dimitrios</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Department of Biology, Clark University, Worcester, Massachusetts, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gay</LastName><ForeName>Gilles</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>UMR CNRS 5557, Unité Sous Contrat INRA 1364, Université de Lyon, Université Lyon 1, Villeurbanne, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Girlanda</LastName><ForeName>Mariangela</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Henrissat</LastName><ForeName>Bernard</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>1] CNRS, UMR 7257, Aix-Marseille Université, Marseille, France. [2] Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, Marseille, France. [3] Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Herrmann</LastName><ForeName>Sylvie</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>1] Department of Soil Ecology, Helmholtz Centre for Environmental Research-Helmholtz Zentrum fuer Umweltforschung, Halle, Germany. [2] German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hess</LastName><ForeName>Jaqueline</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Biosciences, University of Oslo, Oslo, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Högberg</LastName><ForeName>Nils</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Johansson</LastName><ForeName>Tomas</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Khouja</LastName><ForeName>Hassine-Radhouane</ForeName><Initials>HR</Initials><AffiliationInfo><Affiliation>Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>LaButti</LastName><ForeName>Kurt</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lahrmann</LastName><ForeName>Urs</ForeName><Initials>U</Initials><AffiliationInfo><Affiliation>Department of Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Levasseur</LastName><ForeName>Anthony</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>CNRS, UMR 7257, Aix-Marseille Université, Marseille, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lindquist</LastName><ForeName>Erika A</ForeName><Initials>EA</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lipzen</LastName><ForeName>Anna</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Marmeisse</LastName><ForeName>Roland</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>UMR CNRS 5557, Unité Sous Contrat INRA 1364, Université de Lyon, Université Lyon 1, Villeurbanne, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Martino</LastName><ForeName>Elena</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Murat</LastName><ForeName>Claude</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ngan</LastName><ForeName>Chew Y</ForeName><Initials>CY</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nehls</LastName><ForeName>Uwe</ForeName><Initials>U</Initials><AffiliationInfo><Affiliation>Department of Ecology, Biology/Chemistry, Botany, University of Bremen, Bremen, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Plett</LastName><ForeName>Jonathan M</ForeName><Initials>JM</Initials><AffiliationInfo><Affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pringle</LastName><ForeName>Anne</ForeName><Initials>A</Initials><Identifier Source="ORCID">0000000215266739</Identifier><AffiliationInfo><Affiliation>Harvard Forest, Harvard University, Petersham, Massachusetts, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ohm</LastName><ForeName>Robin A</ForeName><Initials>RA</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Perotto</LastName><ForeName>Silvia</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Peter</LastName><ForeName>Martina</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Forest Dynamics, Birmensdorf, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Riley</LastName><ForeName>Robert</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rineau</LastName><ForeName>Francois</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ruytinx</LastName><ForeName>Joske</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Salamov</LastName><ForeName>Asaf</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shah</LastName><ForeName>Firoz</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Hui</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tarkka</LastName><ForeName>Mika</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>1] Department of Soil Ecology, Helmholtz Centre for Environmental Research-Helmholtz Zentrum fuer Umweltforschung, Halle, Germany. [2] German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tritt</LastName><ForeName>Andrew</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Veneault-Fourrey</LastName><ForeName>Claire</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zuccaro</LastName><ForeName>Alga</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>1] Department of Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany. [2] University of Cologne, Botanical Institute, Cluster of Excellence on Plant Sciences (CEPLAS), Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><CollectiveName>Mycorrhizal Genomics Initiative Consortium</CollectiveName></Author><Author ValidYN="Y"><LastName>Tunlid</LastName><ForeName>Anders</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Grigoriev</LastName><ForeName>Igor V</ForeName><Initials>IV</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hibbett</LastName><ForeName>David S</ForeName><Initials>DS</Initials><AffiliationInfo><Affiliation>Department of Biology, Clark University, Worcester, Massachusetts, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Martin</LastName><ForeName>Francis</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList 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Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017353" MajorTopicYN="N">Gene Deletion</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015966" MajorTopicYN="N">Gene Expression Regulation, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016681" MajorTopicYN="N">Genome, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012641" MajorTopicYN="Y">Selection, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013559" MajorTopicYN="N">Symbiosis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014774" MajorTopicYN="N">Virulence</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><InvestigatorList><Investigator ValidYN="Y"><LastName>Buée</LastName><ForeName>Marc</ForeName><Initials>M</Initials></Investigator><Investigator 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PubStatus="accepted"><Year>2015</Year><Month>01</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>2</Month><Day>24</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>2</Month><Day>24</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>6</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">25706625</ArticleId><ArticleId IdType="pii">ng.3223</ArticleId><ArticleId IdType="doi">10.1038/ng.3223</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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