Physiological Responses and Gene Co-Expression Network of Mycorrhizal Roots under K+ Deprivation.
Identifieur interne : 000D74 ( Main/Corpus ); précédent : 000D73; suivant : 000D75Physiological Responses and Gene Co-Expression Network of Mycorrhizal Roots under K+ Deprivation.
Auteurs : Kevin Garcia ; Deborah Chasman ; Sushmita Roy ; Jean-Michel AnéSource :
- Plant physiology [ 1532-2548 ] ; 2017.
English descriptors
- KwdEn :
- Cluster Analysis (MeSH), Gene Expression Profiling (methods), Gene Expression Regulation, Plant (MeSH), Gene Regulatory Networks (MeSH), Host-Pathogen Interactions (MeSH), Medicago truncatula (genetics), Medicago truncatula (metabolism), Medicago truncatula (microbiology), Mycorrhizae (physiology), Plant Proteins (genetics), Plant Proteins (metabolism), Plant Roots (genetics), Plant Roots (metabolism), Plant Roots (microbiology), Potassium (metabolism), Symbiosis (physiology), Time Factors (MeSH).
- MESH :
- chemical , genetics : Plant Proteins.
- genetics : Medicago truncatula, Plant Roots.
- metabolism : Medicago truncatula, Plant Proteins, Plant Roots, Potassium.
- methods : Gene Expression Profiling.
- microbiology : Medicago truncatula, Plant Roots.
- physiology : Mycorrhizae, Symbiosis.
- Cluster Analysis, Gene Expression Regulation, Plant, Gene Regulatory Networks, Host-Pathogen Interactions, Time Factors.
Abstract
Arbuscular mycorrhizal (AM) associations enhance the phosphorous and nitrogen nutrition of host plants, but little is known about their role in potassium (K+) nutrition. Medicago truncatula plants were cocultured with the AM fungus Rhizophagus irregularis under high and low K+ regimes for 6 weeks. We determined how K+ deprivation affects plant development and mineral acquisition and how these negative effects are tempered by the AM colonization. The transcriptional response of AM roots under K+ deficiency was analyzed by whole-genome RNA sequencing. K+ deprivation decreased root biomass and external K+ uptake and modulated oxidative stress gene expression in M. truncatula roots. AM colonization induced specific transcriptional responses to K+ deprivation that seem to temper these negative effects. A gene network analysis revealed putative key regulators of these responses. This study confirmed that AM associations provide some tolerance to K+ deprivation to host plants, revealed that AM symbiosis modulates the expression of specific root genes to cope with this nutrient stress, and identified putative regulators participating in these tolerance mechanisms.
DOI: 10.1104/pp.16.01959
PubMed: 28159827
PubMed Central: PMC5338680
Links to Exploration step
pubmed:28159827Le document en format XML
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and.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin 53792 (S.R.).</nlm:affiliation></affiliation></author><author><name sortKey="Chasman, Deborah" sort="Chasman, Deborah" uniqKey="Chasman D" first="Deborah" last="Chasman">Deborah Chasman</name><affiliation><nlm:affiliation>Department of Bacteriology (K.G., J.-M.A.), Department of Computer Sciences (S.R.), and Department of Agronomy (J.-M.A.), University of Wisconsin, Madison, Wisconsin 53706.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Wisconsin Institute for Discovery, University of Wisconsin, Madison, Wisconsin 53715 (D.C., S.R.); and.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin 53792 (S.R.).</nlm:affiliation></affiliation></author><author><name sortKey="Roy, Sushmita" sort="Roy, Sushmita" uniqKey="Roy S" first="Sushmita" last="Roy">Sushmita Roy</name><affiliation><nlm:affiliation>Department of Bacteriology (K.G., J.-M.A.), Department of Computer Sciences (S.R.), and Department of Agronomy (J.-M.A.), University of Wisconsin, Madison, Wisconsin 53706.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Wisconsin Institute for Discovery, University of Wisconsin, Madison, Wisconsin 53715 (D.C., S.R.); and.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin 53792 (S.R.).</nlm:affiliation></affiliation></author><author><name sortKey="Ane, Jean Michel" sort="Ane, Jean Michel" uniqKey="Ane J" first="Jean-Michel" last="Ané">Jean-Michel Ané</name><affiliation><nlm:affiliation>Department of Bacteriology (K.G., J.-M.A.), Department of Computer Sciences (S.R.), and Department of Agronomy (J.-M.A.), University of Wisconsin, Madison, Wisconsin 53706; jeanmichel.ane@wisc.edu.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Wisconsin Institute for Discovery, University of Wisconsin, Madison, Wisconsin 53715 (D.C., S.R.); and jeanmichel.ane@wisc.edu.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin 53792 (S.R.) jeanmichel.ane@wisc.edu.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Plant physiology</title><idno type="eISSN">1532-2548</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Cluster Analysis (MeSH)</term><term>Gene Expression Profiling (methods)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Gene Regulatory Networks (MeSH)</term><term>Host-Pathogen Interactions (MeSH)</term><term>Medicago truncatula (genetics)</term><term>Medicago truncatula (metabolism)</term><term>Medicago truncatula (microbiology)</term><term>Mycorrhizae (physiology)</term><term>Plant Proteins (genetics)</term><term>Plant Proteins (metabolism)</term><term>Plant Roots (genetics)</term><term>Plant Roots (metabolism)</term><term>Plant Roots (microbiology)</term><term>Potassium (metabolism)</term><term>Symbiosis (physiology)</term><term>Time Factors (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Medicago truncatula</term><term>Plant Roots</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Medicago truncatula</term><term>Plant Proteins</term><term>Plant Roots</term><term>Potassium</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Gene Expression Profiling</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Medicago truncatula</term><term>Plant Roots</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Mycorrhizae</term><term>Symbiosis</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Cluster Analysis</term><term>Gene Expression Regulation, Plant</term><term>Gene Regulatory Networks</term><term>Host-Pathogen Interactions</term><term>Time Factors</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Arbuscular mycorrhizal (AM) associations enhance the phosphorous and nitrogen nutrition of host plants, but little is known about their role in potassium (K<sup>+</sup>) nutrition. <i>Medicago truncatula</i> plants were cocultured with the AM fungus <i>Rhizophagus irregularis</i> under high and low K<sup>+</sup> regimes for 6 weeks. We determined how K<sup>+</sup> deprivation affects plant development and mineral acquisition and how these negative effects are tempered by the AM colonization. The transcriptional response of AM roots under K<sup>+</sup> deficiency was analyzed by whole-genome RNA sequencing. K<sup>+</sup> deprivation decreased root biomass and external K<sup>+</sup> uptake and modulated oxidative stress gene expression in <i>M. truncatula</i> roots. AM colonization induced specific transcriptional responses to K<sup>+</sup> deprivation that seem to temper these negative effects. A gene network analysis revealed putative key regulators of these responses. This study confirmed that AM associations provide some tolerance to K<sup>+</sup> deprivation to host plants, revealed that AM symbiosis modulates the expression of specific root genes to cope with this nutrient stress, and identified putative regulators participating in these tolerance mechanisms.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28159827</PMID><DateCompleted><Year>2017</Year><Month>10</Month><Day>16</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1532-2548</ISSN><JournalIssue CitedMedium="Internet"><Volume>173</Volume><Issue>3</Issue><PubDate><Year>2017</Year><Month>03</Month></PubDate></JournalIssue><Title>Plant physiology</Title><ISOAbbreviation>Plant Physiol</ISOAbbreviation></Journal><ArticleTitle>Physiological Responses and Gene Co-Expression Network of Mycorrhizal Roots under K<sup>+</sup> Deprivation.</ArticleTitle><Pagination><MedlinePgn>1811-1823</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1104/pp.16.01959</ELocationID><Abstract><AbstractText>Arbuscular mycorrhizal (AM) associations enhance the phosphorous and nitrogen nutrition of host plants, but little is known about their role in potassium (K<sup>+</sup>) nutrition. <i>Medicago truncatula</i> plants were cocultured with the AM fungus <i>Rhizophagus irregularis</i> under high and low K<sup>+</sup> regimes for 6 weeks. We determined how K<sup>+</sup> deprivation affects plant development and mineral acquisition and how these negative effects are tempered by the AM colonization. The transcriptional response of AM roots under K<sup>+</sup> deficiency was analyzed by whole-genome RNA sequencing. K<sup>+</sup> deprivation decreased root biomass and external K<sup>+</sup> uptake and modulated oxidative stress gene expression in <i>M. truncatula</i> roots. AM colonization induced specific transcriptional responses to K<sup>+</sup> deprivation that seem to temper these negative effects. A gene network analysis revealed putative key regulators of these responses. This study confirmed that AM associations provide some tolerance to K<sup>+</sup> deprivation to host plants, revealed that AM symbiosis modulates the expression of specific root genes to cope with this nutrient stress, and identified putative regulators participating in these tolerance mechanisms.</AbstractText><CopyrightInformation>© 2017 American Society of Plant Biologists. All Rights Reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Garcia</LastName><ForeName>Kevin</ForeName><Initials>K</Initials><Identifier Source="ORCID">0000-0003-0821-1024</Identifier><AffiliationInfo><Affiliation>Department of Bacteriology (K.G., J.-M.A.), Department of Computer Sciences (S.R.), and Department of Agronomy (J.-M.A.), University of Wisconsin, Madison, Wisconsin 53706.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Wisconsin Institute for Discovery, University of Wisconsin, Madison, Wisconsin 53715 (D.C., S.R.); and.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin 53792 (S.R.).</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chasman</LastName><ForeName>Deborah</ForeName><Initials>D</Initials><Identifier Source="ORCID">0000-0002-7324-0131</Identifier><AffiliationInfo><Affiliation>Department of Bacteriology (K.G., J.-M.A.), Department of Computer Sciences (S.R.), and Department of Agronomy (J.-M.A.), University of Wisconsin, Madison, Wisconsin 53706.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Wisconsin Institute for Discovery, University of Wisconsin, Madison, Wisconsin 53715 (D.C., S.R.); and.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin 53792 (S.R.).</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Roy</LastName><ForeName>Sushmita</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Bacteriology (K.G., J.-M.A.), Department of Computer Sciences (S.R.), and Department of Agronomy (J.-M.A.), University of Wisconsin, Madison, Wisconsin 53706.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Wisconsin Institute for Discovery, University of Wisconsin, Madison, Wisconsin 53715 (D.C., S.R.); and.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin 53792 (S.R.).</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ané</LastName><ForeName>Jean-Michel</ForeName><Initials>JM</Initials><Identifier Source="ORCID">0000-0002-3128-9439</Identifier><AffiliationInfo><Affiliation>Department of Bacteriology (K.G., J.-M.A.), Department of Computer Sciences (S.R.), and Department of Agronomy (J.-M.A.), University of Wisconsin, Madison, Wisconsin 53706; jeanmichel.ane@wisc.edu.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Wisconsin Institute for Discovery, University of Wisconsin, Madison, Wisconsin 53715 (D.C., S.R.); and jeanmichel.ane@wisc.edu.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin 53792 (S.R.) jeanmichel.ane@wisc.edu.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>02</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Plant Physiol</MedlineTA><NlmUniqueID>0401224</NlmUniqueID><ISSNLinking>0032-0889</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>RWP5GA015D</RegistryNumber><NameOfSubstance UI="D011188">Potassium</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D053263" MajorTopicYN="Y">Gene Regulatory Networks</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D054884" MajorTopicYN="N">Host-Pathogen Interactions</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D046913" MajorTopicYN="N">Medicago truncatula</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011188" MajorTopicYN="N">Potassium</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013559" MajorTopicYN="N">Symbiosis</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013997" MajorTopicYN="N">Time Factors</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>12</Month><Day>22</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>01</Month><Day>31</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>2</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>10</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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