Community composition of arbuscular mycorrhizal fungi associated with native plants growing in a petroleum-polluted soil of the Amazon region of Ecuador.
Identifieur interne : 000769 ( Main/Corpus ); précédent : 000768; suivant : 000770Community composition of arbuscular mycorrhizal fungi associated with native plants growing in a petroleum-polluted soil of the Amazon region of Ecuador.
Auteurs : M Nica Garcés-Ruiz ; Carolina Senés-Guerrero ; Stéphane Declerck ; Sylvie CranenbrouckSource :
- MicrobiologyOpen [ 2045-8827 ] ; 2019.
English descriptors
- KwdEn :
- Ecuador (MeSH), Fungi (classification), Fungi (genetics), Fungi (isolation & purification), Fungi (metabolism), Hydrocarbons (analysis), Hydrocarbons (metabolism), Mycorrhizae (classification), Mycorrhizae (genetics), Mycorrhizae (isolation & purification), Mycorrhizae (metabolism), Petroleum (analysis), Petroleum (metabolism), Phylogeny (MeSH), Plant Development (MeSH), Plant Roots (microbiology), Plants (microbiology), Soil (chemistry), Soil Microbiology (MeSH), Soil Pollutants (analysis), Soil Pollutants (metabolism).
- MESH :
- chemical , analysis : Hydrocarbons, Petroleum, Soil Pollutants.
- chemical , chemistry : Soil.
- chemical , metabolism : Hydrocarbons, Petroleum, Soil Pollutants.
- geographic : Ecuador.
- classification : Fungi, Mycorrhizae.
- genetics : Fungi, Mycorrhizae.
- isolation & purification : Fungi, Mycorrhizae.
- metabolism : Fungi, Mycorrhizae.
- microbiology : Plant Roots, Plants.
- Phylogeny, Plant Development, Soil Microbiology.
Abstract
Arbuscular mycorrhizal fungi (AMF) are worldwide distributed plant symbionts. However, their occurrence in hydrocarbon-polluted environments is less investigated, although specific communities may be present with possible interest for remediation strategies. Here, we investigated the AMF community composition associated with the roots of diverse plant species naturally recolonizing a weathered crude oil pond in the Amazon region of Ecuador. Next generation 454 GS-Junior sequencing of an 800 bp LSU rRNA gene PCR amplicon was used. PCR amplicons were affiliated to a maximum-likelihood phylogenetic tree computed from 1.5 kb AMF reference sequences. A high throughput phylogenetic annotation approach, using an evolutionary placement algorithm (EPA) allowed the characterization of sequences to the species level. Fifteen species were detected. Acaulospora species were identified as dominant colonizers, with 73% of relative read abundance, Archaeospora (19.6%) and several genera from the Glomeraceae (Rhizophagus, Glomus macrocarpum-like, Sclerocystis, Dominikia and Kamienskia) were also detected. Although, a diverse community belonging to Glomeraceae was revealed, they represented <10% of the relative abundance in the Pond. Seventy five % of the species could not be identified, suggesting possible new species associated with roots of plants under highly hydrocarbon-polluted conditions.
DOI: 10.1002/mbo3.703
PubMed: 30117306
PubMed Central: PMC6529925
Links to Exploration step
pubmed:30117306Le document en format XML
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Monterrey, Nuevo México, Zapopan, México.</nlm:affiliation></affiliation></author><author><name sortKey="Declerck, Stephane" sort="Declerck, Stephane" uniqKey="Declerck S" first="Stéphane" last="Declerck">Stéphane Declerck</name><affiliation><nlm:affiliation>Laboratory of Mycology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Cranenbrouck, Sylvie" sort="Cranenbrouck, Sylvie" uniqKey="Cranenbrouck S" first="Sylvie" last="Cranenbrouck">Sylvie Cranenbrouck</name><affiliation><nlm:affiliation>Laboratory of Mycology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Laboratory of Mycology, Mycothèque de l'Université catholique de Louvain (MUCL/BCCM), Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, 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Belgium.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Laboratorio de micología, Carrera de Microbiología, Facultad de Ciencia Exactas y Naturales, Pontificia Universidad Católica del Ecuador, Quito, Ecuador.</nlm:affiliation></affiliation></author><author><name sortKey="Senes Guerrero, Carolina" sort="Senes Guerrero, Carolina" uniqKey="Senes Guerrero C" first="Carolina" last="Senés-Guerrero">Carolina Senés-Guerrero</name><affiliation><nlm:affiliation>Tecnologico de Monterrey, Nuevo México, Zapopan, México.</nlm:affiliation></affiliation></author><author><name sortKey="Declerck, Stephane" sort="Declerck, Stephane" uniqKey="Declerck S" first="Stéphane" last="Declerck">Stéphane Declerck</name><affiliation><nlm:affiliation>Laboratory of Mycology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Cranenbrouck, Sylvie" sort="Cranenbrouck, Sylvie" uniqKey="Cranenbrouck S" first="Sylvie" last="Cranenbrouck">Sylvie Cranenbrouck</name><affiliation><nlm:affiliation>Laboratory of Mycology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Laboratory of Mycology, Mycothèque de l'Université catholique de Louvain (MUCL/BCCM), Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium.</nlm:affiliation></affiliation></author></analytic><series><title level="j">MicrobiologyOpen</title><idno type="eISSN">2045-8827</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ecuador (MeSH)</term><term>Fungi (classification)</term><term>Fungi (genetics)</term><term>Fungi (isolation & purification)</term><term>Fungi (metabolism)</term><term>Hydrocarbons (analysis)</term><term>Hydrocarbons (metabolism)</term><term>Mycorrhizae (classification)</term><term>Mycorrhizae (genetics)</term><term>Mycorrhizae (isolation & purification)</term><term>Mycorrhizae (metabolism)</term><term>Petroleum (analysis)</term><term>Petroleum (metabolism)</term><term>Phylogeny (MeSH)</term><term>Plant Development (MeSH)</term><term>Plant Roots (microbiology)</term><term>Plants (microbiology)</term><term>Soil (chemistry)</term><term>Soil Microbiology (MeSH)</term><term>Soil Pollutants (analysis)</term><term>Soil Pollutants (metabolism)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>Hydrocarbons</term><term>Petroleum</term><term>Soil Pollutants</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Soil</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Hydrocarbons</term><term>Petroleum</term><term>Soil Pollutants</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Ecuador</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Fungi</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Fungi</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Fungi</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Fungi</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Roots</term><term>Plants</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Phylogeny</term><term>Plant Development</term><term>Soil Microbiology</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Arbuscular mycorrhizal fungi (AMF) are worldwide distributed plant symbionts. However, their occurrence in hydrocarbon-polluted environments is less investigated, although specific communities may be present with possible interest for remediation strategies. Here, we investigated the AMF community composition associated with the roots of diverse plant species naturally recolonizing a weathered crude oil pond in the Amazon region of Ecuador. Next generation 454 GS-Junior sequencing of an 800 bp LSU rRNA gene PCR amplicon was used. PCR amplicons were affiliated to a maximum-likelihood phylogenetic tree computed from 1.5 kb AMF reference sequences. A high throughput phylogenetic annotation approach, using an evolutionary placement algorithm (EPA) allowed the characterization of sequences to the species level. Fifteen species were detected. Acaulospora species were identified as dominant colonizers, with 73% of relative read abundance, Archaeospora (19.6%) and several genera from the Glomeraceae (Rhizophagus, Glomus macrocarpum-like, Sclerocystis, Dominikia and Kamienskia) were also detected. Although, a diverse community belonging to Glomeraceae was revealed, they represented <10% of the relative abundance in the Pond. Seventy five % of the species could not be identified, suggesting possible new species associated with roots of plants under highly hydrocarbon-polluted conditions.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30117306</PMID><DateCompleted><Year>2019</Year><Month>06</Month><Day>26</Day></DateCompleted><DateRevised><Year>2020</Year><Month>04</Month><Day>16</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">2045-8827</ISSN><JournalIssue CitedMedium="Internet"><Volume>8</Volume><Issue>4</Issue><PubDate><Year>2019</Year><Month>04</Month></PubDate></JournalIssue><Title>MicrobiologyOpen</Title><ISOAbbreviation>Microbiologyopen</ISOAbbreviation></Journal><ArticleTitle>Community composition of arbuscular mycorrhizal fungi associated with native plants growing in a petroleum-polluted soil of the Amazon region of Ecuador.</ArticleTitle><Pagination><MedlinePgn>e00703</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1002/mbo3.703</ELocationID><Abstract><AbstractText>Arbuscular mycorrhizal fungi (AMF) are worldwide distributed plant symbionts. However, their occurrence in hydrocarbon-polluted environments is less investigated, although specific communities may be present with possible interest for remediation strategies. Here, we investigated the AMF community composition associated with the roots of diverse plant species naturally recolonizing a weathered crude oil pond in the Amazon region of Ecuador. Next generation 454 GS-Junior sequencing of an 800 bp LSU rRNA gene PCR amplicon was used. PCR amplicons were affiliated to a maximum-likelihood phylogenetic tree computed from 1.5 kb AMF reference sequences. A high throughput phylogenetic annotation approach, using an evolutionary placement algorithm (EPA) allowed the characterization of sequences to the species level. Fifteen species were detected. Acaulospora species were identified as dominant colonizers, with 73% of relative read abundance, Archaeospora (19.6%) and several genera from the Glomeraceae (Rhizophagus, Glomus macrocarpum-like, Sclerocystis, Dominikia and Kamienskia) were also detected. Although, a diverse community belonging to Glomeraceae was revealed, they represented <10% of the relative abundance in the Pond. Seventy five % of the species could not be identified, suggesting possible new species associated with roots of plants under highly hydrocarbon-polluted conditions.</AbstractText><CopyrightInformation>© 2018 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Garcés-Ruiz</LastName><ForeName>Mónica</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Laboratory of Mycology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratorio de micología, Carrera de Microbiología, Facultad de Ciencia Exactas y Naturales, Pontificia Universidad Católica del Ecuador, Quito, Ecuador.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Senés-Guerrero</LastName><ForeName>Carolina</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Tecnologico de Monterrey, Nuevo México, Zapopan, México.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Declerck</LastName><ForeName>Stéphane</ForeName><Initials>S</Initials><Identifier Source="ORCID">0000-0002-0459-5975</Identifier><AffiliationInfo><Affiliation>Laboratory of Mycology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cranenbrouck</LastName><ForeName>Sylvie</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Laboratory of Mycology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratory of Mycology, Mycothèque de l'Université catholique de Louvain (MUCL/BCCM), Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate 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