Transferability of SSR markers from related Uredinales species to the coffee rust Hemileia vastatrix.
Identifieur interne : 000154 ( Ncbi/Merge ); précédent : 000153; suivant : 000155Transferability of SSR markers from related Uredinales species to the coffee rust Hemileia vastatrix.
Auteurs : M. Cristancho [Colombie] ; C. EscobarSource :
- Genetics and molecular research : GMR [ 1676-5680 ] ; 2008.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Basidiomycota, Répétitions microsatellites.
- microbiologie : Coffea, Maladies des plantes.
- Génome végétal, Spécificité d'espèce, Transfert horizontal de gène.
English descriptors
- KwdEn :
- MESH :
- genetics : Basidiomycota, Microsatellite Repeats.
- microbiology : Coffea, Plant Diseases.
- Gene Transfer, Horizontal, Genome, Plant, Species Specificity.
Abstract
The aim of the present research was to test the transferability of simple sequence repeat (SSR) markers developed in two Uredinales species to Hemileia vastatrix, coffee rust. The development of efficient techniques for the identification of H. vastatrix isolates is imperative, given the continuous development of new races. The transferability of 25 SSR markers developed in the related Uredinales species Puccinia coronata f. sp lolli and Melampsora linii to H. vastatrix was tested. A low level of transferability of SSRs was detected, and only 4 potential markers that can be used to fingerprint the coffee rust races were identified.
DOI: 10.4238/vol7-4gmr493
PubMed: 19048497
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 000130
- to stream PubMed, to step Curation: 000130
- to stream PubMed, to step Checkpoint: 000130
Links to Exploration step
pubmed:19048497Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Transferability of SSR markers from related Uredinales species to the coffee rust Hemileia vastatrix.</title><author><name sortKey="Cristancho, M" sort="Cristancho, M" uniqKey="Cristancho M" first="M" last="Cristancho">M. Cristancho</name><affiliation wicri:level="1"><nlm:affiliation>Plant Pathology Department, National Coffee Research Centre, CENICAFE-Colombia National Center for Coffee Research, Plan Alto, Chinchiná-Caldas, Colombia. marco.cristancho@cafedecolombia.com</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>Plant Pathology Department, National Coffee Research Centre, CENICAFE-Colombia National Center for Coffee Research, Plan Alto, Chinchiná-Caldas</wicri:regionArea><wicri:noRegion>Chinchiná-Caldas</wicri:noRegion></affiliation></author><author><name sortKey="Escobar, C" sort="Escobar, C" uniqKey="Escobar C" first="C" last="Escobar">C. Escobar</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2008">2008</date><idno type="RBID">pubmed:19048497</idno><idno type="pmid">19048497</idno><idno type="doi">10.4238/vol7-4gmr493</idno><idno type="wicri:Area/PubMed/Corpus">000130</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000130</idno><idno type="wicri:Area/PubMed/Curation">000130</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000130</idno><idno type="wicri:Area/PubMed/Checkpoint">000130</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000130</idno><idno type="wicri:Area/Ncbi/Merge">000154</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Transferability of SSR markers from related Uredinales species to the coffee rust Hemileia vastatrix.</title><author><name sortKey="Cristancho, M" sort="Cristancho, M" uniqKey="Cristancho M" first="M" last="Cristancho">M. Cristancho</name><affiliation wicri:level="1"><nlm:affiliation>Plant Pathology Department, National Coffee Research Centre, CENICAFE-Colombia National Center for Coffee Research, Plan Alto, Chinchiná-Caldas, Colombia. marco.cristancho@cafedecolombia.com</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>Plant Pathology Department, National Coffee Research Centre, CENICAFE-Colombia National Center for Coffee Research, Plan Alto, Chinchiná-Caldas</wicri:regionArea><wicri:noRegion>Chinchiná-Caldas</wicri:noRegion></affiliation></author><author><name sortKey="Escobar, C" sort="Escobar, C" uniqKey="Escobar C" first="C" last="Escobar">C. Escobar</name></author></analytic><series><title level="j">Genetics and molecular research : GMR</title><idno type="eISSN">1676-5680</idno><imprint><date when="2008" type="published">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (genetics)</term><term>Coffea (microbiology)</term><term>Gene Transfer, Horizontal (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Microsatellite Repeats (genetics)</term><term>Plant Diseases (microbiology)</term><term>Species Specificity (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Basidiomycota (génétique)</term><term>Coffea (microbiologie)</term><term>Génome végétal (MeSH)</term><term>Maladies des plantes (microbiologie)</term><term>Répétitions microsatellites (génétique)</term><term>Spécificité d'espèce (MeSH)</term><term>Transfert horizontal de gène (MeSH)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Basidiomycota</term><term>Microsatellite Repeats</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Basidiomycota</term><term>Répétitions microsatellites</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Coffea</term><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Coffea</term><term>Plant Diseases</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Transfer, Horizontal</term><term>Genome, Plant</term><term>Species Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Génome végétal</term><term>Spécificité d'espèce</term><term>Transfert horizontal de gène</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The aim of the present research was to test the transferability of simple sequence repeat (SSR) markers developed in two Uredinales species to Hemileia vastatrix, coffee rust. The development of efficient techniques for the identification of H. vastatrix isolates is imperative, given the continuous development of new races. The transferability of 25 SSR markers developed in the related Uredinales species Puccinia coronata f. sp lolli and Melampsora linii to H. vastatrix was tested. A low level of transferability of SSRs was detected, and only 4 potential markers that can be used to fingerprint the coffee rust races were identified.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">19048497</PMID><DateCompleted><Year>2009</Year><Month>02</Month><Day>06</Day></DateCompleted><DateRevised><Year>2019</Year><Month>11</Month><Day>11</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1676-5680</ISSN><JournalIssue CitedMedium="Internet"><Volume>7</Volume><Issue>4</Issue><PubDate><Year>2008</Year><Month>Oct</Month><Day>28</Day></PubDate></JournalIssue><Title>Genetics and molecular research : GMR</Title><ISOAbbreviation>Genet Mol Res</ISOAbbreviation></Journal><ArticleTitle>Transferability of SSR markers from related Uredinales species to the coffee rust Hemileia vastatrix.</ArticleTitle><Pagination><MedlinePgn>1186-92</MedlinePgn></Pagination><Abstract><AbstractText>The aim of the present research was to test the transferability of simple sequence repeat (SSR) markers developed in two Uredinales species to Hemileia vastatrix, coffee rust. The development of efficient techniques for the identification of H. vastatrix isolates is imperative, given the continuous development of new races. The transferability of 25 SSR markers developed in the related Uredinales species Puccinia coronata f. sp lolli and Melampsora linii to H. vastatrix was tested. A low level of transferability of SSRs was detected, and only 4 potential markers that can be used to fingerprint the coffee rust races were identified.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Cristancho</LastName><ForeName>M</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Plant Pathology Department, National Coffee Research Centre, CENICAFE-Colombia National Center for Coffee Research, Plan Alto, Chinchiná-Caldas, Colombia. marco.cristancho@cafedecolombia.com</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Escobar</LastName><ForeName>C</ForeName><Initials>C</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2008</Year><Month>10</Month><Day>28</Day></ArticleDate></Article><MedlineJournalInfo><Country>Brazil</Country><MedlineTA>Genet Mol Res</MedlineTA><NlmUniqueID>101169387</NlmUniqueID><ISSNLinking>1676-5680</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040503" MajorTopicYN="N">Coffea</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D022761" MajorTopicYN="N">Gene Transfer, Horizontal</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018895" MajorTopicYN="N">Microsatellite Repeats</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2008</Year><Month>12</Month><Day>3</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2009</Year><Month>2</Month><Day>7</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2008</Year><Month>12</Month><Day>3</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">19048497</ArticleId><ArticleId IdType="pii">gmr493</ArticleId><ArticleId IdType="doi">10.4238/vol7-4gmr493</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Colombie</li></country></list><tree><noCountry><name sortKey="Escobar, C" sort="Escobar, C" uniqKey="Escobar C" first="C" last="Escobar">C. Escobar</name></noCountry><country name="Colombie"><noRegion><name sortKey="Cristancho, M" sort="Cristancho, M" uniqKey="Cristancho M" first="M" last="Cristancho">M. Cristancho</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/MelampsoraV2/Data/Ncbi/Merge
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000154 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd -nk 000154 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= MelampsoraV2
|flux= Ncbi
|étape= Merge
|type= RBID
|clé= pubmed:19048497
|texte= Transferability of SSR markers from related Uredinales species to the coffee rust Hemileia vastatrix.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/RBID.i -Sk "pubmed:19048497" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd \
| NlmPubMed2Wicri -a MelampsoraV2
| This area was generated with Dilib version V0.6.38. |  |