Generation and analysis of expression sequence tags from haustoria of the wheat stripe rust fungus Puccinia striiformis f. sp. Tritici
Identifieur interne : 000190 ( Ncbi/Checkpoint ); précédent : 000189; suivant : 000191Generation and analysis of expression sequence tags from haustoria of the wheat stripe rust fungus Puccinia striiformis f. sp. Tritici
Auteurs : Chuntao Yin [États-Unis] ; Xianming Chen [États-Unis] ; Xiaojie Wang [République populaire de Chine] ; Qingmei Han [République populaire de Chine] ; Zhensheng Kang [République populaire de Chine] ; Scot H. Hulbert [États-Unis]Source :
- BMC Genomics [ 1471-2164 ] ; 2009.
Abstract
Stripe rust, caused by
A total of 5,126 EST sequences of high quality were generated from haustoria of
The haustorial cDNA library was useful in identifying genes of the stripe rust fungus expressed during the infection process. From the library, we identified 15 genes encoding putative secreted proteins and six genes induced during the infection process. These genes are candidates for further studies to determine their functions in wheat-
Url:
DOI: 10.1186/1471-2164-10-626
PubMed: 20028560
PubMed Central: 2805700
Affiliations:
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PMC:2805700Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Generation and analysis of expression sequence tags from haustoria of the wheat stripe rust fungus <italic>Puccinia striiformis </italic>
f. sp. <italic>Tritici</italic>
</title>
<author><name sortKey="Yin, Chuntao" sort="Yin, Chuntao" uniqKey="Yin C" first="Chuntao" last="Yin">Chuntao Yin</name>
<affiliation wicri:level="2"><nlm:aff id="I1">Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430</wicri:regionArea>
<placeName><region type="state">Washington (État)</region>
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<author><name sortKey="Chen, Xianming" sort="Chen, Xianming" uniqKey="Chen X" first="Xianming" last="Chen">Xianming Chen</name>
<affiliation wicri:level="2"><nlm:aff id="I1">Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, USA</nlm:aff>
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<wicri:regionArea>Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430</wicri:regionArea>
<placeName><region type="state">Washington (État)</region>
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<affiliation wicri:level="2"><nlm:aff id="I2">US Department of Agricultural Research Service, Wheat Genetic, Quality, Physiology and Disease Research Unit, Pullman, WA 99164-6430, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
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<placeName><region type="state">Washington (État)</region>
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</affiliation>
</author>
<author><name sortKey="Wang, Xiaojie" sort="Wang, Xiaojie" uniqKey="Wang X" first="Xiaojie" last="Wang">Xiaojie Wang</name>
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Plant Protection and Shaanxi Key Laboratory of Molecular Biology for Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100</wicri:regionArea>
<wicri:noRegion>712100</wicri:noRegion>
</affiliation>
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<author><name sortKey="Han, Qingmei" sort="Han, Qingmei" uniqKey="Han Q" first="Qingmei" last="Han">Qingmei Han</name>
<affiliation wicri:level="1"><nlm:aff id="I3">College of Plant Protection and Shaanxi Key Laboratory of Molecular Biology for Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100, PR China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Plant Protection and Shaanxi Key Laboratory of Molecular Biology for Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100</wicri:regionArea>
<wicri:noRegion>712100</wicri:noRegion>
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<author><name sortKey="Kang, Zhensheng" sort="Kang, Zhensheng" uniqKey="Kang Z" first="Zhensheng" last="Kang">Zhensheng Kang</name>
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Plant Protection and Shaanxi Key Laboratory of Molecular Biology for Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100</wicri:regionArea>
<wicri:noRegion>712100</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hulbert, Scot H" sort="Hulbert, Scot H" uniqKey="Hulbert S" first="Scot H" last="Hulbert">Scot H. Hulbert</name>
<affiliation wicri:level="2"><nlm:aff id="I1">Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430</wicri:regionArea>
<placeName><region type="state">Washington (État)</region>
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<series><title level="j">BMC Genomics</title>
<idno type="eISSN">1471-2164</idno>
<imprint><date when="2009">2009</date>
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<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>Stripe rust, caused by <italic>Puccinia striiformis </italic>
f. sp. <italic>tritici </italic>
(<italic>Pst</italic>
), is one of the most destructive diseases of wheat (<italic>Triticum aestivum </italic>
L.) worldwide. In spite of its agricultural importance, the genomics and genetics of the pathogen are poorly characterized. <italic>Pst </italic>
transcripts from urediniospores and germinated urediniospores have been examined previously, but little is known about genes expressed during host infection. Some genes involved in virulence in other rust fungi have been found to be specifically expressed in haustoria. Therefore, the objective of this study was to generate a cDNA library to characterize genes expressed in haustoria of <italic>Pst</italic>
.</p>
</sec>
<sec><title>Results</title>
<p>A total of 5,126 EST sequences of high quality were generated from haustoria of <italic>Pst</italic>
, from which 287 contigs and 847 singletons were derived. Approximately 10% and 26% of the 1,134 unique sequences were homologous to proteins with known functions and hypothetical proteins, respectively. The remaining 64% of the unique sequences had no significant similarities in GenBank. Fifteen genes were predicted to be proteins secreted from <italic>Pst </italic>
haustoria. Analysis of ten genes, including six secreted protein genes, using quantitative RT-PCR revealed changes in transcript levels in different developmental and infection stages of the pathogen.</p>
</sec>
<sec><title>Conclusions</title>
<p>The haustorial cDNA library was useful in identifying genes of the stripe rust fungus expressed during the infection process. From the library, we identified 15 genes encoding putative secreted proteins and six genes induced during the infection process. These genes are candidates for further studies to determine their functions in wheat-<italic>Pst </italic>
interactions.</p>
</sec>
</div>
</front>
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<affiliations><list><country><li>République populaire de Chine</li>
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