Identification of a Differentially Expressed TIR-NBS-LRR Gene in a Major QTL Associated to Leaf Rust Resistance in Salix
Identifieur interne : 000632 ( Main/Exploration ); précédent : 000631; suivant : 000633Identification of a Differentially Expressed TIR-NBS-LRR Gene in a Major QTL Associated to Leaf Rust Resistance in Salix
Auteurs : Tom Martin [Suède] ; Ann-Christin Rönnberg-W Stljung [Suède] ; Jan Stenlid [Suède] ; Berit Samils [Suède]Source :
- PLoS ONE [ 1932-6203 ] ; 2016.
Descripteurs français
- KwdFr :
- Alignement de séquences (MeSH), Analyse de séquence d'ADN (MeSH), Basidiomycota (pathogénicité), Chromosomes artificiels de bactérie (génétique), Chromosomes artificiels de bactérie (métabolisme), Données de séquences moléculaires (MeSH), Feuilles de plante (génétique), Feuilles de plante (microbiologie), Génotype (MeSH), Locus de caractère quantitatif (MeSH), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Polymorphisme de nucléotide simple (MeSH), Protéines végétales (composition chimique), Protéines végétales (génétique), Protéines végétales (métabolisme), Récepteur de type Toll-1 (composition chimique), Récepteur de type Toll-1 (génétique), Récepteur de type Toll-1 (métabolisme), Régulation de l'expression des gènes végétaux (MeSH), Résistance à la maladie (génétique), Salix (génétique), Salix (microbiologie), Structure tertiaire des protéines (MeSH), Séquence d'acides aminés (MeSH).
- MESH :
- composition chimique : Protéines végétales, Récepteur de type Toll-1.
- génétique : Chromosomes artificiels de bactérie, Feuilles de plante, Maladies des plantes, Protéines végétales, Récepteur de type Toll-1, Résistance à la maladie, Salix.
- microbiologie : Feuilles de plante, Maladies des plantes, Salix.
- métabolisme : Chromosomes artificiels de bactérie, Protéines végétales, Récepteur de type Toll-1.
- pathogénicité : Basidiomycota.
- Alignement de séquences, Analyse de séquence d'ADN, Données de séquences moléculaires, Génotype, Locus de caractère quantitatif, Polymorphisme de nucléotide simple, Régulation de l'expression des gènes végétaux, Structure tertiaire des protéines, Séquence d'acides aminés.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Basidiomycota (pathogenicity), Chromosomes, Artificial, Bacterial (genetics), Chromosomes, Artificial, Bacterial (metabolism), Disease Resistance (genetics), Gene Expression Regulation, Plant (MeSH), Genotype (MeSH), Molecular Sequence Data (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), Plant Leaves (genetics), Plant Leaves (microbiology), Plant Proteins (chemistry), Plant Proteins (genetics), Plant Proteins (metabolism), Polymorphism, Single Nucleotide (MeSH), Protein Structure, Tertiary (MeSH), Quantitative Trait Loci (MeSH), Salix (genetics), Salix (microbiology), Sequence Alignment (MeSH), Sequence Analysis, DNA (MeSH), Toll-Like Receptor 1 (chemistry), Toll-Like Receptor 1 (genetics), Toll-Like Receptor 1 (metabolism).
- MESH :
- chemical , chemistry : Plant Proteins, Toll-Like Receptor 1.
- genetics : Chromosomes, Artificial, Bacterial, Disease Resistance, Plant Diseases, Plant Leaves, Plant Proteins, Salix, Toll-Like Receptor 1.
- metabolism : Chromosomes, Artificial, Bacterial, Plant Proteins, Toll-Like Receptor 1.
- microbiology : Plant Diseases, Plant Leaves, Salix.
- pathogenicity : Basidiomycota.
- Amino Acid Sequence, Gene Expression Regulation, Plant, Genotype, Molecular Sequence Data, Polymorphism, Single Nucleotide, Protein Structure, Tertiary, Quantitative Trait Loci, Sequence Alignment, Sequence Analysis, DNA.
Abstract
An earlier identified major quantitative trait locus for resistance towards the willow leaf rust fungus
Url:
DOI: 10.1371/journal.pone.0168776
PubMed: 28002449
PubMed Central: 5176316
Affiliations:
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Le document en format XML
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<term>Basidiomycota (pathogenicity)</term>
<term>Chromosomes, Artificial, Bacterial (genetics)</term>
<term>Chromosomes, Artificial, Bacterial (metabolism)</term>
<term>Disease Resistance (genetics)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genotype (MeSH)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (microbiology)</term>
<term>Plant Leaves (genetics)</term>
<term>Plant Leaves (microbiology)</term>
<term>Plant Proteins (chemistry)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Polymorphism, Single Nucleotide (MeSH)</term>
<term>Protein Structure, Tertiary (MeSH)</term>
<term>Quantitative Trait Loci (MeSH)</term>
<term>Salix (genetics)</term>
<term>Salix (microbiology)</term>
<term>Sequence Alignment (MeSH)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Toll-Like Receptor 1 (chemistry)</term>
<term>Toll-Like Receptor 1 (genetics)</term>
<term>Toll-Like Receptor 1 (metabolism)</term>
</keywords>
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<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Basidiomycota (pathogénicité)</term>
<term>Chromosomes artificiels de bactérie (génétique)</term>
<term>Chromosomes artificiels de bactérie (métabolisme)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Feuilles de plante (génétique)</term>
<term>Feuilles de plante (microbiologie)</term>
<term>Génotype (MeSH)</term>
<term>Locus de caractère quantitatif (MeSH)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Polymorphisme de nucléotide simple (MeSH)</term>
<term>Protéines végétales (composition chimique)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Récepteur de type Toll-1 (composition chimique)</term>
<term>Récepteur de type Toll-1 (génétique)</term>
<term>Récepteur de type Toll-1 (métabolisme)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Résistance à la maladie (génétique)</term>
<term>Salix (génétique)</term>
<term>Salix (microbiologie)</term>
<term>Structure tertiaire des protéines (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
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<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Plant Proteins</term>
<term>Toll-Like Receptor 1</term>
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<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Protéines végétales</term>
<term>Récepteur de type Toll-1</term>
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<term>Disease Resistance</term>
<term>Plant Diseases</term>
<term>Plant Leaves</term>
<term>Plant Proteins</term>
<term>Salix</term>
<term>Toll-Like Receptor 1</term>
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<term>Maladies des plantes</term>
<term>Protéines végétales</term>
<term>Récepteur de type Toll-1</term>
<term>Résistance à la maladie</term>
<term>Salix</term>
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<term>Plant Proteins</term>
<term>Toll-Like Receptor 1</term>
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<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Feuilles de plante</term>
<term>Maladies des plantes</term>
<term>Salix</term>
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<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term>
<term>Plant Leaves</term>
<term>Salix</term>
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<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Chromosomes artificiels de bactérie</term>
<term>Protéines végétales</term>
<term>Récepteur de type Toll-1</term>
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<keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Basidiomycota</term>
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<keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Basidiomycota</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Gene Expression Regulation, Plant</term>
<term>Genotype</term>
<term>Molecular Sequence Data</term>
<term>Polymorphism, Single Nucleotide</term>
<term>Protein Structure, Tertiary</term>
<term>Quantitative Trait Loci</term>
<term>Sequence Alignment</term>
<term>Sequence Analysis, DNA</term>
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<keywords scheme="MESH" xml:lang="fr"><term>Alignement de séquences</term>
<term>Analyse de séquence d'ADN</term>
<term>Données de séquences moléculaires</term>
<term>Génotype</term>
<term>Locus de caractère quantitatif</term>
<term>Polymorphisme de nucléotide simple</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Structure tertiaire des protéines</term>
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<front><div type="abstract" xml:lang="en"><p>An earlier identified major quantitative trait locus for resistance towards the willow leaf rust fungus <italic>Melampsora larici-epitea</italic>
in a <italic>Salix viminalis</italic>
x (<italic>S</italic>
. <italic>viminalis</italic>
× <italic>S</italic>
. <italic>schwerinii</italic>
) population was used to identify potential resistance genes to the rust pathogen. Screening a genomic bacterial artificial chromosome library with markers from the peak position of the QTL region revealed one gene with TIR-NBS-LRR (Toll Interleukin1 Receptor-Nucleotide Binding Site-Leucine-Rich Repeat) domain structure indicative of a resistance gene. The resistance gene analog was denoted RGA1 and further analysis revealed a number of non-synonymous single nucleotide polymorphisms in the LRR domain between the resistant and susceptible <italic>Salix</italic>
genotypes. Gene expression levels under controlled conditions showed a significantly lower constitutive expression of RGA1 in the susceptible genotype. In addition, the susceptible genotype showed a significantly reduced expression level of the RGA1 gene at 24 hours post inoculation with <italic>M</italic>
. <italic>larici-epitea</italic>
. This indicates that the pathogen may actively suppress RGA1 gene expression allowing a compatible plant-pathogen interaction and causing infection.</p>
</div>
</front>
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