Identification of a Differentially Expressed TIR-NBS-LRR Gene in a Major QTL Associated to Leaf Rust Resistance in Salix.
Identifieur interne : 000051 ( PubMed/Checkpoint ); précédent : 000050; suivant : 000052Identification of a Differentially Expressed TIR-NBS-LRR Gene in a Major QTL Associated to Leaf Rust Resistance in Salix.
Auteurs : Tom Martin [Suède] ; Ann-Christin Rönnberg-W Stljung [Suède] ; Jan Stenlid [Suède] ; Berit Samils [Suède]Source :
- PloS one [ 1932-6203 ] ; 2016.
Descripteurs français
- KwdFr :
- Alignement de séquences (MeSH), Analyse de séquence d'ADN (MeSH), Basidiomycota (pathogénicité), Chromosomes artificiels de bactérie (génétique), Chromosomes artificiels de bactérie (métabolisme), Données de séquences moléculaires (MeSH), Feuilles de plante (génétique), Feuilles de plante (microbiologie), Génotype (MeSH), Locus de caractère quantitatif (MeSH), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Polymorphisme de nucléotide simple (MeSH), Protéines végétales (composition chimique), Protéines végétales (génétique), Protéines végétales (métabolisme), Récepteur de type Toll-1 (composition chimique), Récepteur de type Toll-1 (génétique), Récepteur de type Toll-1 (métabolisme), Régulation de l'expression des gènes végétaux (MeSH), Résistance à la maladie (génétique), Salix (génétique), Salix (microbiologie), Structure tertiaire des protéines (MeSH), Séquence d'acides aminés (MeSH).
- MESH :
- composition chimique : Protéines végétales, Récepteur de type Toll-1.
- génétique : Chromosomes artificiels de bactérie, Feuilles de plante, Maladies des plantes, Protéines végétales, Récepteur de type Toll-1, Résistance à la maladie, Salix.
- microbiologie : Feuilles de plante, Maladies des plantes, Salix.
- métabolisme : Chromosomes artificiels de bactérie, Protéines végétales, Récepteur de type Toll-1.
- pathogénicité : Basidiomycota.
- Alignement de séquences, Analyse de séquence d'ADN, Données de séquences moléculaires, Génotype, Locus de caractère quantitatif, Polymorphisme de nucléotide simple, Régulation de l'expression des gènes végétaux, Structure tertiaire des protéines, Séquence d'acides aminés.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Basidiomycota (pathogenicity), Chromosomes, Artificial, Bacterial (genetics), Chromosomes, Artificial, Bacterial (metabolism), Disease Resistance (genetics), Gene Expression Regulation, Plant (MeSH), Genotype (MeSH), Molecular Sequence Data (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), Plant Leaves (genetics), Plant Leaves (microbiology), Plant Proteins (chemistry), Plant Proteins (genetics), Plant Proteins (metabolism), Polymorphism, Single Nucleotide (MeSH), Protein Structure, Tertiary (MeSH), Quantitative Trait Loci (MeSH), Salix (genetics), Salix (microbiology), Sequence Alignment (MeSH), Sequence Analysis, DNA (MeSH), Toll-Like Receptor 1 (chemistry), Toll-Like Receptor 1 (genetics), Toll-Like Receptor 1 (metabolism).
- MESH :
- chemical , chemistry : Plant Proteins, Toll-Like Receptor 1.
- genetics : Chromosomes, Artificial, Bacterial, Disease Resistance, Plant Diseases, Plant Leaves, Plant Proteins, Salix, Toll-Like Receptor 1.
- metabolism : Chromosomes, Artificial, Bacterial, Plant Proteins, Toll-Like Receptor 1.
- microbiology : Plant Diseases, Plant Leaves, Salix.
- pathogenicity : Basidiomycota.
- Amino Acid Sequence, Gene Expression Regulation, Plant, Genotype, Molecular Sequence Data, Polymorphism, Single Nucleotide, Protein Structure, Tertiary, Quantitative Trait Loci, Sequence Alignment, Sequence Analysis, DNA.
Abstract
An earlier identified major quantitative trait locus for resistance towards the willow leaf rust fungus Melampsora larici-epitea in a Salix viminalis x (S. viminalis × S. schwerinii) population was used to identify potential resistance genes to the rust pathogen. Screening a genomic bacterial artificial chromosome library with markers from the peak position of the QTL region revealed one gene with TIR-NBS-LRR (Toll Interleukin1 Receptor-Nucleotide Binding Site-Leucine-Rich Repeat) domain structure indicative of a resistance gene. The resistance gene analog was denoted RGA1 and further analysis revealed a number of non-synonymous single nucleotide polymorphisms in the LRR domain between the resistant and susceptible Salix genotypes. Gene expression levels under controlled conditions showed a significantly lower constitutive expression of RGA1 in the susceptible genotype. In addition, the susceptible genotype showed a significantly reduced expression level of the RGA1 gene at 24 hours post inoculation with M. larici-epitea. This indicates that the pathogen may actively suppress RGA1 gene expression allowing a compatible plant-pathogen interaction and causing infection.
DOI: 10.1371/journal.pone.0168776
PubMed: 28002449
PubMed Central: PMC5176316
Affiliations:
Links toward previous steps (curation, corpus...)
Links to Exploration step
pubmed:28002449Le document en format XML
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<term>Basidiomycota (pathogenicity)</term>
<term>Chromosomes, Artificial, Bacterial (genetics)</term>
<term>Chromosomes, Artificial, Bacterial (metabolism)</term>
<term>Disease Resistance (genetics)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genotype (MeSH)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (microbiology)</term>
<term>Plant Leaves (genetics)</term>
<term>Plant Leaves (microbiology)</term>
<term>Plant Proteins (chemistry)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Polymorphism, Single Nucleotide (MeSH)</term>
<term>Protein Structure, Tertiary (MeSH)</term>
<term>Quantitative Trait Loci (MeSH)</term>
<term>Salix (genetics)</term>
<term>Salix (microbiology)</term>
<term>Sequence Alignment (MeSH)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Toll-Like Receptor 1 (chemistry)</term>
<term>Toll-Like Receptor 1 (genetics)</term>
<term>Toll-Like Receptor 1 (metabolism)</term>
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<term>Basidiomycota (pathogénicité)</term>
<term>Chromosomes artificiels de bactérie (génétique)</term>
<term>Chromosomes artificiels de bactérie (métabolisme)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Feuilles de plante (génétique)</term>
<term>Feuilles de plante (microbiologie)</term>
<term>Génotype (MeSH)</term>
<term>Locus de caractère quantitatif (MeSH)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Polymorphisme de nucléotide simple (MeSH)</term>
<term>Protéines végétales (composition chimique)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Récepteur de type Toll-1 (composition chimique)</term>
<term>Récepteur de type Toll-1 (génétique)</term>
<term>Récepteur de type Toll-1 (métabolisme)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Résistance à la maladie (génétique)</term>
<term>Salix (génétique)</term>
<term>Salix (microbiologie)</term>
<term>Structure tertiaire des protéines (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
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<term>Toll-Like Receptor 1</term>
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<term>Récepteur de type Toll-1</term>
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<term>Disease Resistance</term>
<term>Plant Diseases</term>
<term>Plant Leaves</term>
<term>Plant Proteins</term>
<term>Salix</term>
<term>Toll-Like Receptor 1</term>
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<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Chromosomes artificiels de bactérie</term>
<term>Feuilles de plante</term>
<term>Maladies des plantes</term>
<term>Protéines végétales</term>
<term>Récepteur de type Toll-1</term>
<term>Résistance à la maladie</term>
<term>Salix</term>
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<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Chromosomes, Artificial, Bacterial</term>
<term>Plant Proteins</term>
<term>Toll-Like Receptor 1</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Feuilles de plante</term>
<term>Maladies des plantes</term>
<term>Salix</term>
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<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term>
<term>Plant Leaves</term>
<term>Salix</term>
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<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Chromosomes artificiels de bactérie</term>
<term>Protéines végétales</term>
<term>Récepteur de type Toll-1</term>
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<keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Basidiomycota</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Basidiomycota</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Gene Expression Regulation, Plant</term>
<term>Genotype</term>
<term>Molecular Sequence Data</term>
<term>Polymorphism, Single Nucleotide</term>
<term>Protein Structure, Tertiary</term>
<term>Quantitative Trait Loci</term>
<term>Sequence Alignment</term>
<term>Sequence Analysis, DNA</term>
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<term>Analyse de séquence d'ADN</term>
<term>Données de séquences moléculaires</term>
<term>Génotype</term>
<term>Locus de caractère quantitatif</term>
<term>Polymorphisme de nucléotide simple</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Structure tertiaire des protéines</term>
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<front><div type="abstract" xml:lang="en">An earlier identified major quantitative trait locus for resistance towards the willow leaf rust fungus Melampsora larici-epitea in a Salix viminalis x (S. viminalis × S. schwerinii) population was used to identify potential resistance genes to the rust pathogen. Screening a genomic bacterial artificial chromosome library with markers from the peak position of the QTL region revealed one gene with TIR-NBS-LRR (Toll Interleukin1 Receptor-Nucleotide Binding Site-Leucine-Rich Repeat) domain structure indicative of a resistance gene. The resistance gene analog was denoted RGA1 and further analysis revealed a number of non-synonymous single nucleotide polymorphisms in the LRR domain between the resistant and susceptible Salix genotypes. Gene expression levels under controlled conditions showed a significantly lower constitutive expression of RGA1 in the susceptible genotype. In addition, the susceptible genotype showed a significantly reduced expression level of the RGA1 gene at 24 hours post inoculation with M. larici-epitea. This indicates that the pathogen may actively suppress RGA1 gene expression allowing a compatible plant-pathogen interaction and causing infection.</div>
</front>
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<Abstract><AbstractText>An earlier identified major quantitative trait locus for resistance towards the willow leaf rust fungus Melampsora larici-epitea in a Salix viminalis x (S. viminalis × S. schwerinii) population was used to identify potential resistance genes to the rust pathogen. Screening a genomic bacterial artificial chromosome library with markers from the peak position of the QTL region revealed one gene with TIR-NBS-LRR (Toll Interleukin1 Receptor-Nucleotide Binding Site-Leucine-Rich Repeat) domain structure indicative of a resistance gene. The resistance gene analog was denoted RGA1 and further analysis revealed a number of non-synonymous single nucleotide polymorphisms in the LRR domain between the resistant and susceptible Salix genotypes. Gene expression levels under controlled conditions showed a significantly lower constitutive expression of RGA1 in the susceptible genotype. In addition, the susceptible genotype showed a significantly reduced expression level of the RGA1 gene at 24 hours post inoculation with M. larici-epitea. This indicates that the pathogen may actively suppress RGA1 gene expression allowing a compatible plant-pathogen interaction and causing infection.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Martin</LastName>
<ForeName>Tom</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Department of Plant Biology, Swedish University of Agricultural Sciences, Uppsala, Sweden.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Rönnberg-Wästljung</LastName>
<ForeName>Ann-Christin</ForeName>
<Initials>AC</Initials>
<AffiliationInfo><Affiliation>Department of Plant Biology, Swedish University of Agricultural Sciences, Uppsala, Sweden.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Stenlid</LastName>
<ForeName>Jan</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Samils</LastName>
<ForeName>Berit</ForeName>
<Initials>B</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0002-6456-6121</Identifier>
<AffiliationInfo><Affiliation>Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.</Affiliation>
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<MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName>
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<MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017434" MajorTopicYN="N">Protein Structure, Tertiary</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D040641" MajorTopicYN="N">Quantitative Trait Loci</DescriptorName>
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<MeshHeading><DescriptorName UI="D032108" MajorTopicYN="N">Salix</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D016415" MajorTopicYN="N">Sequence Alignment</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D051194" MajorTopicYN="N">Toll-Like Receptor 1</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
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<CoiStatement>The authors have declared that no competing interests exist.</CoiStatement>
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