Comparative genomic and transcriptional analyses of the carbohydrate-active enzymes and secretomes of phytopathogenic fungi reveal their significant roles during infection and development
Identifieur interne : 000784 ( Main/Exploration ); précédent : 000783; suivant : 000785Comparative genomic and transcriptional analyses of the carbohydrate-active enzymes and secretomes of phytopathogenic fungi reveal their significant roles during infection and development
Auteurs : Xueliang Lyu [République populaire de Chine] ; Cuicui Shen [République populaire de Chine] ; Yanping Fu [République populaire de Chine] ; Jiatao Xie [République populaire de Chine] ; Daohong Jiang [République populaire de Chine] ; Guoqing Li [République populaire de Chine] ; Jiasen Cheng [République populaire de Chine]Source :
- Scientific Reports [ 2045-2322 ] ; 2015.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Ascomycota (enzymologie), Ascomycota (génétique), Ascomycota (pathogénicité), Basidiomycota (enzymologie), Basidiomycota (génétique), Basidiomycota (pathogénicité), Facteurs de virulence (génétique), Génome fongique (génétique), Maladies des plantes (microbiologie), Métabolisme glucidique (génétique), Paroi cellulaire (métabolisme), Plantes (microbiologie), Protéines fongiques (génétique), Protéines fongiques (métabolisme).
- MESH :
- enzymologie : Ascomycota, Basidiomycota.
- génétique : Ascomycota, Basidiomycota, Facteurs de virulence, Génome fongique, Métabolisme glucidique, Protéines fongiques.
- microbiologie : Maladies des plantes, Plantes.
- métabolisme : Paroi cellulaire, Protéines fongiques.
- pathogénicité : Ascomycota, Basidiomycota.
- Analyse de profil d'expression de gènes.
English descriptors
- KwdEn :
- Ascomycota (enzymology), Ascomycota (genetics), Ascomycota (pathogenicity), Basidiomycota (enzymology), Basidiomycota (genetics), Basidiomycota (pathogenicity), Carbohydrate Metabolism (genetics), Cell Wall (metabolism), Fungal Proteins (genetics), Fungal Proteins (metabolism), Gene Expression Profiling (MeSH), Genome, Fungal (genetics), Plant Diseases (microbiology), Plants (microbiology), Virulence Factors (genetics).
- MESH :
- chemical , genetics : Fungal Proteins, Virulence Factors.
- enzymology : Ascomycota, Basidiomycota.
- genetics : Ascomycota, Basidiomycota, Carbohydrate Metabolism, Genome, Fungal.
- metabolism : Cell Wall, Fungal Proteins.
- microbiology : Plant Diseases, Plants.
- pathogenicity : Ascomycota, Basidiomycota.
- Gene Expression Profiling.
Abstract
Our comparative genomic analysis showed that the numbers of plant cell wall (PCW)- and fungal cell wall (FCW)-degradation-associated carbohydrate-active enzymes (CAZymes) in necrotrophic and hemibiotrophic fungi are significantly larger than that in most biotrophic fungi. However, our transcriptional analyses of CAZyme-encoding genes in
Url:
DOI: 10.1038/srep15565
PubMed: 26531059
PubMed Central: 4632110
Affiliations:
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University</institution>, Wuhan 430070, Hubei Province,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="a2"><institution>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University</institution>, Wuhan 430070, Hubei Province,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Fu, Yanping" sort="Fu, Yanping" uniqKey="Fu Y" first="Yanping" last="Fu">Yanping Fu</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University</institution>, Wuhan 430070, Hubei Province,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Xie, Jiatao" sort="Xie, Jiatao" uniqKey="Xie J" first="Jiatao" last="Xie">Jiatao Xie</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University</institution>, Wuhan 430070, Hubei Province,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Jiang, Daohong" sort="Jiang, Daohong" uniqKey="Jiang D" first="Daohong" last="Jiang">Daohong Jiang</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University</institution>, Wuhan 430070, Hubei Province,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="a2"><institution>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University</institution>, Wuhan 430070, Hubei Province,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Li, Guoqing" sort="Li, Guoqing" uniqKey="Li G" first="Guoqing" last="Li">Guoqing Li</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University</institution>, Wuhan 430070, Hubei Province,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="a2"><institution>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University</institution>, Wuhan 430070, Hubei Province,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Cheng, Jiasen" sort="Cheng, Jiasen" uniqKey="Cheng J" first="Jiasen" last="Cheng">Jiasen Cheng</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University</institution>, Wuhan 430070, Hubei Province,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="a2"><institution>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University</institution>, Wuhan 430070, Hubei Province,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Scientific Reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ascomycota (enzymology)</term><term>Ascomycota (genetics)</term><term>Ascomycota (pathogenicity)</term><term>Basidiomycota (enzymology)</term><term>Basidiomycota (genetics)</term><term>Basidiomycota (pathogenicity)</term><term>Carbohydrate Metabolism (genetics)</term><term>Cell Wall (metabolism)</term><term>Fungal Proteins (genetics)</term><term>Fungal Proteins (metabolism)</term><term>Gene Expression Profiling (MeSH)</term><term>Genome, Fungal (genetics)</term><term>Plant Diseases (microbiology)</term><term>Plants (microbiology)</term><term>Virulence Factors (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Ascomycota (enzymologie)</term><term>Ascomycota (génétique)</term><term>Ascomycota (pathogénicité)</term><term>Basidiomycota (enzymologie)</term><term>Basidiomycota (génétique)</term><term>Basidiomycota (pathogénicité)</term><term>Facteurs de virulence (génétique)</term><term>Génome fongique (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Métabolisme glucidique (génétique)</term><term>Paroi cellulaire (métabolisme)</term><term>Plantes (microbiologie)</term><term>Protéines fongiques (génétique)</term><term>Protéines fongiques (métabolisme)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Fungal Proteins</term><term>Virulence Factors</term></keywords><keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Ascomycota</term><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Ascomycota</term><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Ascomycota</term><term>Basidiomycota</term><term>Carbohydrate Metabolism</term><term>Genome, Fungal</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Ascomycota</term><term>Basidiomycota</term><term>Facteurs de virulence</term><term>Génome fongique</term><term>Métabolisme glucidique</term><term>Protéines fongiques</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Cell Wall</term><term>Fungal Proteins</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Plantes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Plants</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Paroi cellulaire</term><term>Protéines fongiques</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Ascomycota</term><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Ascomycota</term><term>Basidiomycota</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Our comparative genomic analysis showed that the numbers of plant cell wall (PCW)- and fungal cell wall (FCW)-degradation-associated carbohydrate-active enzymes (CAZymes) in necrotrophic and hemibiotrophic fungi are significantly larger than that in most biotrophic fungi. However, our transcriptional analyses of CAZyme-encoding genes in <italic>Melampsora larici-populina</italic>, <italic>Puccinia graminis</italic> and <italic>Sclerotinia sclerotiorum</italic> showed that many genes encoding PCW- and FCW-degradation-associated CAZymes were significantly up-regulated during the infection of both necrotrophic fungi and biotrophic fungi, indicating an existence of a universal mechanism underlying PCW degradation and FCW reorganization or modification, which are both intimately involved in necrotrophic and biotrophic fungal infection. Furthermore, our results showed that the FCW reorganization or modification was also related to the fungal development. Additionally, our transcriptional analysis of the secretome of <italic>S. sclerotiorum</italic> showed that many secreted protein-encoding genes were dramatically induced during infection. Among them, a small, cysteine-rich protein SsCVNH was experimentally confirmed to be essential for the virulence and sclerotial development, indicating that the small secreted proteins might also play crucial roles as potential effectors in host-non-specific necrotrophic fungi.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Park, B H" uniqKey="Park B">B. H. Park</name></author><author><name sortKey="Karpinets, T V" uniqKey="Karpinets T">T. V. Karpinets</name></author><author><name sortKey="Syed, M H" uniqKey="Syed M">M. H. Syed</name></author><author><name sortKey="Leuze, M R" uniqKey="Leuze M">M. R. Leuze</name></author><author><name sortKey="Uberbacher, E C" uniqKey="Uberbacher E">E. C. Uberbacher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cantarel, B L" uniqKey="Cantarel B">B. L. 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Nguyen</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Lyu, Xueliang" sort="Lyu, Xueliang" uniqKey="Lyu X" first="Xueliang" last="Lyu">Xueliang Lyu</name></noRegion><name sortKey="Cheng, Jiasen" sort="Cheng, Jiasen" uniqKey="Cheng J" first="Jiasen" last="Cheng">Jiasen Cheng</name><name sortKey="Cheng, Jiasen" sort="Cheng, Jiasen" uniqKey="Cheng J" first="Jiasen" last="Cheng">Jiasen Cheng</name><name sortKey="Fu, Yanping" sort="Fu, Yanping" uniqKey="Fu Y" first="Yanping" last="Fu">Yanping Fu</name><name sortKey="Jiang, Daohong" sort="Jiang, Daohong" uniqKey="Jiang D" first="Daohong" last="Jiang">Daohong Jiang</name><name sortKey="Jiang, Daohong" sort="Jiang, Daohong" uniqKey="Jiang D" first="Daohong" last="Jiang">Daohong Jiang</name><name sortKey="Li, Guoqing" sort="Li, Guoqing" uniqKey="Li G" first="Guoqing" last="Li">Guoqing Li</name><name sortKey="Li, Guoqing" sort="Li, Guoqing" uniqKey="Li G" first="Guoqing" last="Li">Guoqing Li</name><name sortKey="Lyu, Xueliang" sort="Lyu, Xueliang" uniqKey="Lyu X" first="Xueliang" last="Lyu">Xueliang Lyu</name><name sortKey="Shen, Cuicui" sort="Shen, Cuicui" uniqKey="Shen C" first="Cuicui" last="Shen">Cuicui Shen</name><name sortKey="Shen, Cuicui" sort="Shen, Cuicui" uniqKey="Shen C" first="Cuicui" last="Shen">Cuicui Shen</name><name sortKey="Xie, Jiatao" sort="Xie, Jiatao" uniqKey="Xie J" first="Jiatao" last="Xie">Jiatao Xie</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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