Comparative genomic and transcriptional analyses of the carbohydrate-active enzymes and secretomes of phytopathogenic fungi reveal their significant roles during infection and development.
Identifieur interne : 000060 ( PubMed/Corpus ); précédent : 000059; suivant : 000061Comparative genomic and transcriptional analyses of the carbohydrate-active enzymes and secretomes of phytopathogenic fungi reveal their significant roles during infection and development.
Auteurs : Xueliang Lyu ; Cuicui Shen ; Yanping Fu ; Jiatao Xie ; Daohong Jiang ; Guoqing Li ; Jiasen ChengSource :
- Scientific reports [ 2045-2322 ] ; 2015.
English descriptors
- KwdEn :
- Ascomycota (enzymology), Ascomycota (genetics), Ascomycota (pathogenicity), Basidiomycota (enzymology), Basidiomycota (genetics), Basidiomycota (pathogenicity), Carbohydrate Metabolism (genetics), Cell Wall (metabolism), Fungal Proteins (genetics), Fungal Proteins (metabolism), Gene Expression Profiling (MeSH), Genome, Fungal (genetics), Plant Diseases (microbiology), Plants (microbiology), Virulence Factors (genetics).
- MESH :
- chemical , genetics : Fungal Proteins, Virulence Factors.
- enzymology : Ascomycota, Basidiomycota.
- genetics : Ascomycota, Basidiomycota, Carbohydrate Metabolism, Genome, Fungal.
- metabolism : Cell Wall, Fungal Proteins.
- microbiology : Plant Diseases, Plants.
- pathogenicity : Ascomycota, Basidiomycota.
- Gene Expression Profiling.
Abstract
Our comparative genomic analysis showed that the numbers of plant cell wall (PCW)- and fungal cell wall (FCW)-degradation-associated carbohydrate-active enzymes (CAZymes) in necrotrophic and hemibiotrophic fungi are significantly larger than that in most biotrophic fungi. However, our transcriptional analyses of CAZyme-encoding genes in Melampsora larici-populina, Puccinia graminis and Sclerotinia sclerotiorum showed that many genes encoding PCW- and FCW-degradation-associated CAZymes were significantly up-regulated during the infection of both necrotrophic fungi and biotrophic fungi, indicating an existence of a universal mechanism underlying PCW degradation and FCW reorganization or modification, which are both intimately involved in necrotrophic and biotrophic fungal infection. Furthermore, our results showed that the FCW reorganization or modification was also related to the fungal development. Additionally, our transcriptional analysis of the secretome of S. sclerotiorum showed that many secreted protein-encoding genes were dramatically induced during infection. Among them, a small, cysteine-rich protein SsCVNH was experimentally confirmed to be essential for the virulence and sclerotial development, indicating that the small secreted proteins might also play crucial roles as potential effectors in host-non-specific necrotrophic fungi.
DOI: 10.1038/srep15565
PubMed: 26531059
PubMed Central: PMC4632110
Links to Exploration step
pubmed:26531059Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Comparative genomic and transcriptional analyses of the carbohydrate-active enzymes and secretomes of phytopathogenic fungi reveal their significant roles during infection and development.</title><author><name sortKey="Lyu, Xueliang" sort="Lyu, Xueliang" uniqKey="Lyu X" first="Xueliang" last="Lyu">Xueliang Lyu</name><affiliation><nlm:affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author><author><name sortKey="Shen, Cuicui" sort="Shen, Cuicui" uniqKey="Shen C" first="Cuicui" last="Shen">Cuicui Shen</name><affiliation><nlm:affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author><author><name sortKey="Fu, Yanping" sort="Fu, Yanping" uniqKey="Fu Y" first="Yanping" last="Fu">Yanping Fu</name><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author><author><name sortKey="Xie, Jiatao" sort="Xie, Jiatao" uniqKey="Xie J" first="Jiatao" last="Xie">Jiatao Xie</name><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author><author><name sortKey="Jiang, Daohong" sort="Jiang, Daohong" uniqKey="Jiang D" first="Daohong" last="Jiang">Daohong Jiang</name><affiliation><nlm:affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author><author><name sortKey="Li, Guoqing" sort="Li, Guoqing" uniqKey="Li G" first="Guoqing" last="Li">Guoqing Li</name><affiliation><nlm:affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author><author><name sortKey="Cheng, Jiasen" sort="Cheng, Jiasen" uniqKey="Cheng J" first="Jiasen" last="Cheng">Jiasen Cheng</name><affiliation><nlm:affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:26531059</idno><idno type="pmid">26531059</idno><idno type="doi">10.1038/srep15565</idno><idno type="pmc">PMC4632110</idno><idno type="wicri:Area/PubMed/Corpus">000060</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000060</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Comparative genomic and transcriptional analyses of the carbohydrate-active enzymes and secretomes of phytopathogenic fungi reveal their significant roles during infection and development.</title><author><name sortKey="Lyu, Xueliang" sort="Lyu, Xueliang" uniqKey="Lyu X" first="Xueliang" last="Lyu">Xueliang Lyu</name><affiliation><nlm:affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author><author><name sortKey="Shen, Cuicui" sort="Shen, Cuicui" uniqKey="Shen C" first="Cuicui" last="Shen">Cuicui Shen</name><affiliation><nlm:affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author><author><name sortKey="Fu, Yanping" sort="Fu, Yanping" uniqKey="Fu Y" first="Yanping" last="Fu">Yanping Fu</name><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author><author><name sortKey="Xie, Jiatao" sort="Xie, Jiatao" uniqKey="Xie J" first="Jiatao" last="Xie">Jiatao Xie</name><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author><author><name sortKey="Jiang, Daohong" sort="Jiang, Daohong" uniqKey="Jiang D" first="Daohong" last="Jiang">Daohong Jiang</name><affiliation><nlm:affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author><author><name sortKey="Li, Guoqing" sort="Li, Guoqing" uniqKey="Li G" first="Guoqing" last="Li">Guoqing Li</name><affiliation><nlm:affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author><author><name sortKey="Cheng, Jiasen" sort="Cheng, Jiasen" uniqKey="Cheng J" first="Jiasen" last="Cheng">Jiasen Cheng</name><affiliation><nlm:affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Scientific reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ascomycota (enzymology)</term><term>Ascomycota (genetics)</term><term>Ascomycota (pathogenicity)</term><term>Basidiomycota (enzymology)</term><term>Basidiomycota (genetics)</term><term>Basidiomycota (pathogenicity)</term><term>Carbohydrate Metabolism (genetics)</term><term>Cell Wall (metabolism)</term><term>Fungal Proteins (genetics)</term><term>Fungal Proteins (metabolism)</term><term>Gene Expression Profiling (MeSH)</term><term>Genome, Fungal (genetics)</term><term>Plant Diseases (microbiology)</term><term>Plants (microbiology)</term><term>Virulence Factors (genetics)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Fungal Proteins</term><term>Virulence Factors</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Ascomycota</term><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Ascomycota</term><term>Basidiomycota</term><term>Carbohydrate Metabolism</term><term>Genome, Fungal</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Cell Wall</term><term>Fungal Proteins</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Plants</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Ascomycota</term><term>Basidiomycota</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Our comparative genomic analysis showed that the numbers of plant cell wall (PCW)- and fungal cell wall (FCW)-degradation-associated carbohydrate-active enzymes (CAZymes) in necrotrophic and hemibiotrophic fungi are significantly larger than that in most biotrophic fungi. However, our transcriptional analyses of CAZyme-encoding genes in Melampsora larici-populina, Puccinia graminis and Sclerotinia sclerotiorum showed that many genes encoding PCW- and FCW-degradation-associated CAZymes were significantly up-regulated during the infection of both necrotrophic fungi and biotrophic fungi, indicating an existence of a universal mechanism underlying PCW degradation and FCW reorganization or modification, which are both intimately involved in necrotrophic and biotrophic fungal infection. Furthermore, our results showed that the FCW reorganization or modification was also related to the fungal development. Additionally, our transcriptional analysis of the secretome of S. sclerotiorum showed that many secreted protein-encoding genes were dramatically induced during infection. Among them, a small, cysteine-rich protein SsCVNH was experimentally confirmed to be essential for the virulence and sclerotial development, indicating that the small secreted proteins might also play crucial roles as potential effectors in host-non-specific necrotrophic fungi. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26531059</PMID><DateCompleted><Year>2016</Year><Month>10</Month><Day>24</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN><JournalIssue CitedMedium="Internet"><Volume>5</Volume><PubDate><Year>2015</Year><Month>Nov</Month><Day>04</Day></PubDate></JournalIssue><Title>Scientific reports</Title><ISOAbbreviation>Sci Rep</ISOAbbreviation></Journal><ArticleTitle>Comparative genomic and transcriptional analyses of the carbohydrate-active enzymes and secretomes of phytopathogenic fungi reveal their significant roles during infection and development.</ArticleTitle><Pagination><MedlinePgn>15565</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/srep15565</ELocationID><Abstract><AbstractText>Our comparative genomic analysis showed that the numbers of plant cell wall (PCW)- and fungal cell wall (FCW)-degradation-associated carbohydrate-active enzymes (CAZymes) in necrotrophic and hemibiotrophic fungi are significantly larger than that in most biotrophic fungi. However, our transcriptional analyses of CAZyme-encoding genes in Melampsora larici-populina, Puccinia graminis and Sclerotinia sclerotiorum showed that many genes encoding PCW- and FCW-degradation-associated CAZymes were significantly up-regulated during the infection of both necrotrophic fungi and biotrophic fungi, indicating an existence of a universal mechanism underlying PCW degradation and FCW reorganization or modification, which are both intimately involved in necrotrophic and biotrophic fungal infection. Furthermore, our results showed that the FCW reorganization or modification was also related to the fungal development. Additionally, our transcriptional analysis of the secretome of S. sclerotiorum showed that many secreted protein-encoding genes were dramatically induced during infection. Among them, a small, cysteine-rich protein SsCVNH was experimentally confirmed to be essential for the virulence and sclerotial development, indicating that the small secreted proteins might also play crucial roles as potential effectors in host-non-specific necrotrophic fungi. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lyu</LastName><ForeName>Xueliang</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shen</LastName><ForeName>Cuicui</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fu</LastName><ForeName>Yanping</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xie</LastName><ForeName>Jiatao</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jiang</LastName><ForeName>Daohong</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Guoqing</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cheng</LastName><ForeName>Jiasen</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>11</Month><Day>04</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Sci Rep</MedlineTA><NlmUniqueID>101563288</NlmUniqueID><ISSNLinking>2045-2322</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005656">Fungal Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D037521">Virulence Factors</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001203" MajorTopicYN="N">Ascomycota</DescriptorName><QualifierName UI="Q000201" MajorTopicYN="Y">enzymology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000201" MajorTopicYN="Y">enzymology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D050260" MajorTopicYN="N">Carbohydrate Metabolism</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002473" MajorTopicYN="N">Cell Wall</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005656" MajorTopicYN="N">Fungal Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016681" MajorTopicYN="N">Genome, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010944" MajorTopicYN="N">Plants</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D037521" MajorTopicYN="N">Virulence Factors</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>06</Month><Day>26</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>09</Month><Day>29</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>11</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>11</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>10</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26531059</ArticleId><ArticleId IdType="pii">srep15565</ArticleId><ArticleId IdType="doi">10.1038/srep15565</ArticleId><ArticleId IdType="pmc">PMC4632110</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Mol Plant Microbe Interact. 2007 Aug;20(8):944-54</Citation><ArticleIdList><ArticleId IdType="pubmed">17722698</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Protoc. 2009;4(3):363-71</Citation><ArticleIdList><ArticleId IdType="pubmed">19247286</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2014 Jan;27(1):40-55</Citation><ArticleIdList><ArticleId IdType="pubmed">24299212</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Plant Biol. 2007 Aug;10(4):358-65</Citation><ArticleIdList><ArticleId IdType="pubmed">17611143</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1998 Dec 8;95(25):14863-8</Citation><ArticleIdList><ArticleId IdType="pubmed">9843981</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2012 Jul;40(Web Server issue):W445-51</Citation><ArticleIdList><ArticleId IdType="pubmed">22645317</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2012;7(4):e34962</Citation><ArticleIdList><ArticleId IdType="pubmed">22558105</ArticleId></ArticleIdList></Reference><Reference><Citation>Methods. 2001 Dec;25(4):402-8</Citation><ArticleIdList><ArticleId IdType="pubmed">11846609</ArticleId></ArticleIdList></Reference><Reference><Citation>Glycobiology. 2010 Dec;20(12):1574-84</Citation><ArticleIdList><ArticleId IdType="pubmed">20696711</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2009 Nov;10(6):735-47</Citation><ArticleIdList><ArticleId IdType="pubmed">19849781</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Genet. 2011 Aug;7(8):e1002230</Citation><ArticleIdList><ArticleId IdType="pubmed">21876677</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Methods. 2011;8(10):785-6</Citation><ArticleIdList><ArticleId IdType="pubmed">21959131</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2006 Jun;19(6):682-93</Citation><ArticleIdList><ArticleId IdType="pubmed">16776301</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2007 May 1;23(9):1073-9</Citation><ArticleIdList><ArticleId IdType="pubmed">17332019</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2004 Nov 22;20(17):3246-8</Citation><ArticleIdList><ArticleId IdType="pubmed">15180930</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Microbiol. 2008 Jun;68(6):1348-65</Citation><ArticleIdList><ArticleId IdType="pubmed">18433453</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2004 Jul 1;5(4):347-52</Citation><ArticleIdList><ArticleId IdType="pubmed">20565602</ArticleId></ArticleIdList></Reference><Reference><Citation>J Comput Chem. 2004 Oct;25(13):1605-12</Citation><ArticleIdList><ArticleId IdType="pubmed">15264254</ArticleId></ArticleIdList></Reference><Reference><Citation>Antimicrob Agents Chemother. 1997 Jul;41(7):1521-30</Citation><ArticleIdList><ArticleId IdType="pubmed">9210678</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Phytopathol. 2009;47:233-63</Citation><ArticleIdList><ArticleId IdType="pubmed">19400631</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2010;11:525</Citation><ArticleIdList><ArticleId IdType="pubmed">20920201</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2014;15:336</Citation><ArticleIdList><ArticleId IdType="pubmed">24886033</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Pathog. 2012 Jan;8(1):e1002467</Citation><ArticleIdList><ArticleId IdType="pubmed">22241993</ArticleId></ArticleIdList></Reference><Reference><Citation>Structure. 2008 Apr;16(4):570-84</Citation><ArticleIdList><ArticleId IdType="pubmed">18400178</ArticleId></ArticleIdList></Reference><Reference><Citation>Arabidopsis Book. 2010;8:e0136</Citation><ArticleIdList><ArticleId IdType="pubmed">22303261</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Inform. 2009 Oct;23(1):205-11</Citation><ArticleIdList><ArticleId IdType="pubmed">20180275</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Lett. 2005 Dec 1;253(1):19-27</Citation><ArticleIdList><ArticleId IdType="pubmed">16216445</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2015 Feb 1;31(3):445-6</Citation><ArticleIdList><ArticleId IdType="pubmed">25294921</ArticleId></ArticleIdList></Reference><Reference><Citation>Proteins. 2011 May;79(5):1538-49</Citation><ArticleIdList><ArticleId IdType="pubmed">21365681</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2011 Jul;24(7):808-18</Citation><ArticleIdList><ArticleId IdType="pubmed">21644839</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Pathog. 2012;8(4):e1002643</Citation><ArticleIdList><ArticleId IdType="pubmed">22496661</ArticleId></ArticleIdList></Reference><Reference><Citation>Phytochemistry. 2003 Sep;64(2):339-66</Citation><ArticleIdList><ArticleId IdType="pubmed">12943752</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2011 May 31;108(22):9166-71</Citation><ArticleIdList><ArticleId IdType="pubmed">21536894</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Phytopathol. 2006;44:41-60</Citation><ArticleIdList><ArticleId IdType="pubmed">16448329</ArticleId></ArticleIdList></Reference><Reference><Citation>Carbohydr Res. 2009 Sep 28;344(14):1879-900</Citation><ArticleIdList><ArticleId IdType="pubmed">19616198</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2004 Feb 12;20(3):426-7</Citation><ArticleIdList><ArticleId IdType="pubmed">14960472</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Biol. 2003 Jan 3;325(1):211-23</Citation><ArticleIdList><ArticleId IdType="pubmed">12473463</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2009 Jan;37(Database issue):D233-8</Citation><ArticleIdList><ArticleId IdType="pubmed">18838391</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2010 Oct;154(2):483-6</Citation><ArticleIdList><ArticleId IdType="pubmed">20921169</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2013;8(1):e53901</Citation><ArticleIdList><ArticleId IdType="pubmed">23342034</ArticleId></ArticleIdList></Reference><Reference><Citation>Proteins. 2005 Sep 1;60(4):670-8</Citation><ArticleIdList><ArticleId IdType="pubmed">16003744</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 1997 Oct;7(10):986-95</Citation><ArticleIdList><ArticleId IdType="pubmed">9331369</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2010 Dec 10;330(6010):1543-6</Citation><ArticleIdList><ArticleId IdType="pubmed">21148392</ArticleId></ArticleIdList></Reference><Reference><Citation>J Basic Microbiol. 2009 Jun;49(3):231-41</Citation><ArticleIdList><ArticleId IdType="pubmed">19025875</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2008 Dec;36(21):e141</Citation><ArticleIdList><ArticleId IdType="pubmed">18927111</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioessays. 2006 Aug;28(8):799-808</Citation><ArticleIdList><ArticleId IdType="pubmed">16927300</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2013 Dec 15;29(24):3232-4</Citation><ArticleIdList><ArticleId IdType="pubmed">24078684</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/MelampsoraV2/Data/PubMed/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000060 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/PubMed/Corpus/biblio.hfd -nk 000060 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= MelampsoraV2
|flux= PubMed
|étape= Corpus
|type= RBID
|clé= pubmed:26531059
|texte= Comparative genomic and transcriptional analyses of the carbohydrate-active enzymes and secretomes of phytopathogenic fungi reveal their significant roles during infection and development.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Corpus/RBID.i -Sk "pubmed:26531059" \
| HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a MelampsoraV2
| This area was generated with Dilib version V0.6.38. |  |