Xanthomonas citri pv. viticola Affecting Grapevine in Brazil: Emergence of a Successful Monomorphic Pathogen.
Identifieur interne : 000169 ( Main/Corpus ); précédent : 000168; suivant : 000170Xanthomonas citri pv. viticola Affecting Grapevine in Brazil: Emergence of a Successful Monomorphic Pathogen.
Auteurs : Marisa A S V. Ferreira ; Sophie Bonneau ; Martial Briand ; Sophie Cesbron ; Perrine Portier ; Armelle Darrasse ; Marco A S. Gama ; Maria Angélica G. Barbosa ; Rosa De L R. Mariano ; Elineide B. Souza ; Marie-Agnès JacquesSource :
- Frontiers in plant science [ 1664-462X ] ; 2019.
Abstract
The pathovar viticola of Xanthomonas citri causes bacterial canker of grapevine. This disease was first recorded in India in 1972, and later in Brazil in 1998, where its distribution is currently restricted to the northeastern region. A multilocus sequence analysis (MLSA) based on seven housekeeping genes and a multilocus variable number of tandem repeat analysis (MLVA) with eight loci were performed in order to assess the genetic relatedness among strains from India and Brazil. Strains isolated in India from three related pathovars affecting Vitaceae species and pathogenic strains isolated from Amaranthus sp. found in bacterial canker-infected vineyards in Brazil were also included. MLSA revealed lack of diversity in all seven genes and grouped grapevine and Amaranthus strains in a monophyletic group in X. citri. The VNTR (variable number of tandem repeat) typing scheme conducted on 107 strains detected 101 haplotypes. The total number of alleles per locus ranged from 5 to 12. A minimum spanning tree (MST) showed that Brazilian strains were clearly separated from Indian strains, which showed unique alleles at three loci. The two strains isolated from symptomatic Amaranthus sp. presented unique alleles at two loci. STRUCTURE analyses revealed three groups congruent with MST and a fourth group with strains from India and Brazil. Admixture among populations were observed in all groups. MST, STRUCTURE and e-BURST analyses showed that the strains collected in 1998 belong to two distinct groups, with predicted founder genotypes from two different vineyards in the same region. This suggest that one introduction of grape planting materials contaminated with genetically distinct strains took place, which was followed by pathogen adaptation. Genome sequencing of one Brazilian strain confirmed typical attributes of pathogenic xanthomonads and allowed the design of a complementary VNTR typing scheme dedicated to X. citri pv. viticola that will allow further epidemiological survey of this genetically monomorphic pathovar.
DOI: 10.3389/fpls.2019.00489
PubMed: 31057588
PubMed Central: PMC6482255
Links to Exploration step
pubmed:31057588Le document en format XML
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Affecting Grapevine in Brazil: Emergence of a Successful Monomorphic Pathogen.</title>
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<sourceDesc><biblStruct><analytic><title xml:lang="en"><i>Xanthomonas citri</i>
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Affecting Grapevine in Brazil: Emergence of a Successful Monomorphic Pathogen.</title>
<author><name sortKey="Ferreira, Marisa A S V" sort="Ferreira, Marisa A S V" uniqKey="Ferreira M" first="Marisa A S V" last="Ferreira">Marisa A S V. Ferreira</name>
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<author><name sortKey="Bonneau, Sophie" sort="Bonneau, Sophie" uniqKey="Bonneau S" first="Sophie" last="Bonneau">Sophie Bonneau</name>
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<author><name sortKey="Briand, Martial" sort="Briand, Martial" uniqKey="Briand M" first="Martial" last="Briand">Martial Briand</name>
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<author><name sortKey="Souza, Elineide B" sort="Souza, Elineide B" uniqKey="Souza E" first="Elineide B" last="Souza">Elineide B. Souza</name>
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<front><div type="abstract" xml:lang="en">The pathovar <i>viticola</i>
of <i>Xanthomonas citri</i>
causes bacterial canker of grapevine. This disease was first recorded in India in 1972, and later in Brazil in 1998, where its distribution is currently restricted to the northeastern region. A multilocus sequence analysis (MLSA) based on seven housekeeping genes and a multilocus variable number of tandem repeat analysis (MLVA) with eight loci were performed in order to assess the genetic relatedness among strains from India and Brazil. Strains isolated in India from three related pathovars affecting Vitaceae species and pathogenic strains isolated from <i>Amaranthus</i>
sp. found in bacterial canker-infected vineyards in Brazil were also included. MLSA revealed lack of diversity in all seven genes and grouped grapevine and Amaranthus strains in a monophyletic group in <i>X. citri</i>
. The VNTR (variable number of tandem repeat) typing scheme conducted on 107 strains detected 101 haplotypes. The total number of alleles per locus ranged from 5 to 12. A minimum spanning tree (MST) showed that Brazilian strains were clearly separated from Indian strains, which showed unique alleles at three loci. The two strains isolated from symptomatic <i>Amaranthus</i>
sp. presented unique alleles at two loci. STRUCTURE analyses revealed three groups congruent with MST and a fourth group with strains from India and Brazil. Admixture among populations were observed in all groups. MST, STRUCTURE and e-BURST analyses showed that the strains collected in 1998 belong to two distinct groups, with predicted founder genotypes from two different vineyards in the same region. This suggest that one introduction of grape planting materials contaminated with genetically distinct strains took place, which was followed by pathogen adaptation. Genome sequencing of one Brazilian strain confirmed typical attributes of pathogenic xanthomonads and allowed the design of a complementary VNTR typing scheme dedicated to <i>X. citri</i>
pv. <i>viticola</i>
that will allow further epidemiological survey of this genetically monomorphic pathovar.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">31057588</PMID>
<DateRevised><Year>2020</Year>
<Month>09</Month>
<Day>30</Day>
</DateRevised>
<Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN>
<JournalIssue CitedMedium="Print"><Volume>10</Volume>
<PubDate><Year>2019</Year>
</PubDate>
</JournalIssue>
<Title>Frontiers in plant science</Title>
<ISOAbbreviation>Front Plant Sci</ISOAbbreviation>
</Journal>
<ArticleTitle><i>Xanthomonas citri</i>
pv. <i>viticola</i>
Affecting Grapevine in Brazil: Emergence of a Successful Monomorphic Pathogen.</ArticleTitle>
<Pagination><MedlinePgn>489</MedlinePgn>
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<ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2019.00489</ELocationID>
<Abstract><AbstractText>The pathovar <i>viticola</i>
of <i>Xanthomonas citri</i>
causes bacterial canker of grapevine. This disease was first recorded in India in 1972, and later in Brazil in 1998, where its distribution is currently restricted to the northeastern region. A multilocus sequence analysis (MLSA) based on seven housekeeping genes and a multilocus variable number of tandem repeat analysis (MLVA) with eight loci were performed in order to assess the genetic relatedness among strains from India and Brazil. Strains isolated in India from three related pathovars affecting Vitaceae species and pathogenic strains isolated from <i>Amaranthus</i>
sp. found in bacterial canker-infected vineyards in Brazil were also included. MLSA revealed lack of diversity in all seven genes and grouped grapevine and Amaranthus strains in a monophyletic group in <i>X. citri</i>
. The VNTR (variable number of tandem repeat) typing scheme conducted on 107 strains detected 101 haplotypes. The total number of alleles per locus ranged from 5 to 12. A minimum spanning tree (MST) showed that Brazilian strains were clearly separated from Indian strains, which showed unique alleles at three loci. The two strains isolated from symptomatic <i>Amaranthus</i>
sp. presented unique alleles at two loci. STRUCTURE analyses revealed three groups congruent with MST and a fourth group with strains from India and Brazil. Admixture among populations were observed in all groups. MST, STRUCTURE and e-BURST analyses showed that the strains collected in 1998 belong to two distinct groups, with predicted founder genotypes from two different vineyards in the same region. This suggest that one introduction of grape planting materials contaminated with genetically distinct strains took place, which was followed by pathogen adaptation. Genome sequencing of one Brazilian strain confirmed typical attributes of pathogenic xanthomonads and allowed the design of a complementary VNTR typing scheme dedicated to <i>X. citri</i>
pv. <i>viticola</i>
that will allow further epidemiological survey of this genetically monomorphic pathovar.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ferreira</LastName>
<ForeName>Marisa A S V</ForeName>
<Initials>MASV</Initials>
<AffiliationInfo><Affiliation>Departamento de Fitopatologia, Universidade de Brasília, Brasília, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bonneau</LastName>
<ForeName>Sophie</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>IRHS, INRA, AGROCAMPUS-Ouest, SFR4207 QUASAV, Université d'Angers, Beaucouzé, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Briand</LastName>
<ForeName>Martial</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>IRHS, INRA, AGROCAMPUS-Ouest, SFR4207 QUASAV, Université d'Angers, Beaucouzé, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cesbron</LastName>
<ForeName>Sophie</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>IRHS, INRA, AGROCAMPUS-Ouest, SFR4207 QUASAV, Université d'Angers, Beaucouzé, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Portier</LastName>
<ForeName>Perrine</ForeName>
<Initials>P</Initials>
<AffiliationInfo><Affiliation>IRHS, INRA, AGROCAMPUS-Ouest, SFR4207 QUASAV, Université d'Angers, Beaucouzé, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Darrasse</LastName>
<ForeName>Armelle</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>IRHS, INRA, AGROCAMPUS-Ouest, SFR4207 QUASAV, Université d'Angers, Beaucouzé, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Gama</LastName>
<ForeName>Marco A S</ForeName>
<Initials>MAS</Initials>
<AffiliationInfo><Affiliation>Laboratório de Fitobacteriologia, Departamento de Agronomia, Universidade Federal Rural de Pernambuco, Recife, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Barbosa</LastName>
<ForeName>Maria Angélica G</ForeName>
<Initials>MAG</Initials>
<AffiliationInfo><Affiliation>Embrapa Semiarido, Petrolina, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Mariano</LastName>
<ForeName>Rosa de L R</ForeName>
<Initials>RLR</Initials>
<AffiliationInfo><Affiliation>Laboratório de Fitobacteriologia, Departamento de Agronomia, Universidade Federal Rural de Pernambuco, Recife, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Souza</LastName>
<ForeName>Elineide B</ForeName>
<Initials>EB</Initials>
<AffiliationInfo><Affiliation>Laboratório de Fitobacteriologia, Departamento de Agronomia, Universidade Federal Rural de Pernambuco, Recife, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Jacques</LastName>
<ForeName>Marie-Agnès</ForeName>
<Initials>MA</Initials>
<AffiliationInfo><Affiliation>IRHS, INRA, AGROCAMPUS-Ouest, SFR4207 QUASAV, Université d'Angers, Beaucouzé, France.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2019</Year>
<Month>04</Month>
<Day>18</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>Switzerland</Country>
<MedlineTA>Front Plant Sci</MedlineTA>
<NlmUniqueID>101568200</NlmUniqueID>
<ISSNLinking>1664-462X</ISSNLinking>
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<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">MLSA</Keyword>
<Keyword MajorTopicYN="N">MLVA</Keyword>
<Keyword MajorTopicYN="N">Vitis vinifera</Keyword>
<Keyword MajorTopicYN="N">Xanthomonas campestris pv. viticola</Keyword>
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<Month>11</Month>
<Day>29</Day>
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<Month>03</Month>
<Day>29</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2019</Year>
<Month>5</Month>
<Day>7</Day>
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