AFLP markers demonstrate local genetic differentiation between two indigenous oak species [Quercus robur L. and Quercus petraea (Matt.) Liebl.] in Flemish populations
Identifieur interne : 000127 ( PascalFrancis/Checkpoint ); précédent : 000126; suivant : 000128AFLP markers demonstrate local genetic differentiation between two indigenous oak species [Quercus robur L. and Quercus petraea (Matt.) Liebl.] in Flemish populations
Auteurs : E. Coart [Belgique] ; V. Lamote [Belgique] ; M. De Loose [Belgique] ; E. Van Bockstaele [Belgique] ; P. Lootens [Belgique] ; I. Roldan-Ruiz [Belgique]Source :
- Theoretical and Applied Genetics [ 0040-5752 ] ; 2002.
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Abstract
The nuclear genetic variation within and between four sessile (Q. petraea) and six pedunculate (Q. robur) autochthonous Flemish oak populations was investigated with AFLP markers. One sessile and one pedunculate oak population were additionally screened for detailed leaf characteristics using an image analysis system. Principal coordinate analysis on the AFLP data classified the oaks in two main groups, according to their taxonomic status. No species-specific AFLP markers were found using four primer combinations, but marker frequency differences up to 71% were recorded between both species. Analysis of the genetic structure showed that the divergence between species, as observed by ordination, was significant. Both species revealed similar diversity levels. A smaller though significant differentiation was also revealed for both species among populations within species. Molecular and morphology based approaches showed a high degree of consistency. Screening of 60 AFLP primer combinations using a bulking strategy did not allow identifying species-specific markers, which supports the conclusions reached in previous studies. The distribution of genetic variability at the species and at the population level is discussed.
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Van Bockstaele</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department for Plant Genetics and Breeding, Agricultural Research Centre, Caritasstraat 21</s1><s2>9090 Melle</s2><s3>BEL</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>Belgique</country><wicri:noRegion>9090 Melle</wicri:noRegion></affiliation><affiliation wicri:level="3"><inist:fA14 i1="02"><s1>University of Ghent, Faculty of Agricultural and Applied Biological sciences, Coupure Links 653</s1><s2>9000 Gent</s2><s3>BEL</s3><sZ>2 aut.</sZ><sZ>4 aut.</sZ></inist:fA14><country>Belgique</country><placeName><region type="province" nuts="2">Province de Flandre-Orientale</region><settlement type="city">Gand</settlement></placeName></affiliation></author><author><name sortKey="Lootens, P" sort="Lootens, P" uniqKey="Lootens P" first="P." last="Lootens">P. Lootens</name><affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Department of Crop Husbandry and Ecophysiology, Agricultural Research Centre, Burg, Van Gansberghelaan 109</s1><s2>9820 Merelbeke</s2><s3>BEL</s3><sZ>5 aut.</sZ></inist:fA14><country>Belgique</country><wicri:noRegion>9820 Merelbeke</wicri:noRegion></affiliation></author><author><name sortKey="Roldan Ruiz, I" sort="Roldan Ruiz, I" uniqKey="Roldan Ruiz I" first="I." last="Roldan-Ruiz">I. Roldan-Ruiz</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department for Plant Genetics and Breeding, Agricultural Research Centre, Caritasstraat 21</s1><s2>9090 Melle</s2><s3>BEL</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>Belgique</country><wicri:noRegion>9090 Melle</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">INIST</idno><idno type="inist">02-0510972</idno><date when="2002">2002</date><idno type="stanalyst">PASCAL 02-0510972 INIST</idno><idno type="RBID">Pascal:02-0510972</idno><idno type="wicri:Area/PascalFrancis/Corpus">000111</idno><idno type="wicri:Area/PascalFrancis/Curation">000024</idno><idno type="wicri:Area/PascalFrancis/Checkpoint">000127</idno><idno type="wicri:explorRef" wicri:stream="PascalFrancis" wicri:step="Checkpoint">000127</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">AFLP markers demonstrate local genetic differentiation between two indigenous oak species [Quercus robur L. and Quercus petraea (Matt.) Liebl.] in Flemish populations</title><author><name sortKey="Coart, E" sort="Coart, E" uniqKey="Coart E" first="E." last="Coart">E. Coart</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department for Plant Genetics and Breeding, Agricultural Research Centre, Caritasstraat 21</s1><s2>9090 Melle</s2><s3>BEL</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>Belgique</country><wicri:noRegion>9090 Melle</wicri:noRegion></affiliation></author><author><name sortKey="Lamote, V" sort="Lamote, V" uniqKey="Lamote V" first="V." last="Lamote">V. Lamote</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department for Plant Genetics and Breeding, Agricultural Research Centre, Caritasstraat 21</s1><s2>9090 Melle</s2><s3>BEL</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>Belgique</country><wicri:noRegion>9090 Melle</wicri:noRegion></affiliation><affiliation wicri:level="3"><inist:fA14 i1="02"><s1>University of Ghent, Faculty of Agricultural and Applied Biological sciences, Coupure Links 653</s1><s2>9000 Gent</s2><s3>BEL</s3><sZ>2 aut.</sZ><sZ>4 aut.</sZ></inist:fA14><country>Belgique</country><placeName><region type="province" nuts="2">Province de Flandre-Orientale</region><settlement type="city">Gand</settlement></placeName></affiliation></author><author><name sortKey="De Loose, M" sort="De Loose, M" uniqKey="De Loose M" first="M." last="De Loose">M. De Loose</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department for Plant Genetics and Breeding, Agricultural Research Centre, Caritasstraat 21</s1><s2>9090 Melle</s2><s3>BEL</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>Belgique</country><wicri:noRegion>9090 Melle</wicri:noRegion></affiliation></author><author><name sortKey="Van Bockstaele, E" sort="Van Bockstaele, E" uniqKey="Van Bockstaele E" first="E." last="Van Bockstaele">E. Van Bockstaele</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department for Plant Genetics and Breeding, Agricultural Research Centre, Caritasstraat 21</s1><s2>9090 Melle</s2><s3>BEL</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>Belgique</country><wicri:noRegion>9090 Melle</wicri:noRegion></affiliation><affiliation wicri:level="3"><inist:fA14 i1="02"><s1>University of Ghent, Faculty of Agricultural and Applied Biological sciences, Coupure Links 653</s1><s2>9000 Gent</s2><s3>BEL</s3><sZ>2 aut.</sZ><sZ>4 aut.</sZ></inist:fA14><country>Belgique</country><placeName><region type="province" nuts="2">Province de Flandre-Orientale</region><settlement type="city">Gand</settlement></placeName></affiliation></author><author><name sortKey="Lootens, P" sort="Lootens, P" uniqKey="Lootens P" first="P." last="Lootens">P. Lootens</name><affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Department of Crop Husbandry and Ecophysiology, Agricultural Research Centre, Burg, Van Gansberghelaan 109</s1><s2>9820 Merelbeke</s2><s3>BEL</s3><sZ>5 aut.</sZ></inist:fA14><country>Belgique</country><wicri:noRegion>9820 Merelbeke</wicri:noRegion></affiliation></author><author><name sortKey="Roldan Ruiz, I" sort="Roldan Ruiz, I" uniqKey="Roldan Ruiz I" first="I." last="Roldan-Ruiz">I. Roldan-Ruiz</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department for Plant Genetics and Breeding, Agricultural Research Centre, Caritasstraat 21</s1><s2>9090 Melle</s2><s3>BEL</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>Belgique</country><wicri:noRegion>9090 Melle</wicri:noRegion></affiliation></author></analytic><series><title level="j" type="main">Theoretical and Applied Genetics</title><title level="j" type="abbreviated">Theor. Appl. Genet.</title><idno type="ISSN">0040-5752</idno><imprint><date when="2002">2002</date></imprint></series></biblStruct></sourceDesc><seriesStmt><title level="j" type="main">Theoretical and Applied Genetics</title><title level="j" type="abbreviated">Theor. Appl. Genet.</title><idno type="ISSN">0040-5752</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amplified fragment length polymorphism marker</term><term>Differentiation</term><term>Genetic marker</term><term>Genetic variability</term><term>Hardwood forest tree</term><term>Molecular biology</term><term>Molecular marker</term><term>Quercus petraea</term><term>Quercus robur</term></keywords><keywords scheme="Pascal" xml:lang="fr"><term>Marqueur moléculaire</term><term>Biologie moléculaire</term><term>Variabilité génétique</term><term>Marqueur AFLP</term><term>Marqueur génétique</term><term>Différenciation</term><term>Quercus petraea</term><term>Quercus robur</term><term>Arbre forestier feuillu</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The nuclear genetic variation within and between four sessile (Q. petraea) and six pedunculate (Q. robur) autochthonous Flemish oak populations was investigated with AFLP markers. One sessile and one pedunculate oak population were additionally screened for detailed leaf characteristics using an image analysis system. Principal coordinate analysis on the AFLP data classified the oaks in two main groups, according to their taxonomic status. No species-specific AFLP markers were found using four primer combinations, but marker frequency differences up to 71% were recorded between both species. Analysis of the genetic structure showed that the divergence between species, as observed by ordination, was significant. Both species revealed similar diversity levels. A smaller though significant differentiation was also revealed for both species among populations within species. Molecular and morphology based approaches showed a high degree of consistency. Screening of 60 AFLP primer combinations using a bulking strategy did not allow identifying species-specific markers, which supports the conclusions reached in previous studies. The distribution of genetic variability at the species and at the population level is discussed.</div></front></TEI><inist><standard h6="B"><pA><fA01 i1="01" i2="1"><s0>0040-5752</s0></fA01><fA02 i1="01"><s0>THAGA6</s0></fA02><fA03 i2="1"><s0>Theor. Appl. Genet.</s0></fA03><fA05><s2>105</s2></fA05><fA06><s2>2-3</s2></fA06><fA08 i1="01" i2="1" l="ENG"><s1>AFLP markers demonstrate local genetic differentiation between two indigenous oak species [Quercus robur L. and Quercus petraea (Matt.) Liebl.] in Flemish populations</s1></fA08><fA11 i1="01" i2="1"><s1>COART (E.)</s1></fA11><fA11 i1="02" i2="1"><s1>LAMOTE (V.)</s1></fA11><fA11 i1="03" i2="1"><s1>DE LOOSE (M.)</s1></fA11><fA11 i1="04" i2="1"><s1>VAN BOCKSTAELE (E.)</s1></fA11><fA11 i1="05" i2="1"><s1>LOOTENS (P.)</s1></fA11><fA11 i1="06" i2="1"><s1>ROLDAN-RUIZ (I.)</s1></fA11><fA14 i1="01"><s1>Department for Plant Genetics and Breeding, Agricultural Research Centre, Caritasstraat 21</s1><s2>9090 Melle</s2><s3>BEL</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></fA14><fA14 i1="02"><s1>University of Ghent, Faculty of Agricultural and Applied Biological sciences, Coupure Links 653</s1><s2>9000 Gent</s2><s3>BEL</s3><sZ>2 aut.</sZ><sZ>4 aut.</sZ></fA14><fA14 i1="03"><s1>Department of Crop Husbandry and Ecophysiology, Agricultural Research Centre, Burg, Van Gansberghelaan 109</s1><s2>9820 Merelbeke</s2><s3>BEL</s3><sZ>5 aut.</sZ></fA14><fA20><s1>431-439</s1></fA20><fA21><s1>2002</s1></fA21><fA23 i1="01"><s0>ENG</s0></fA23><fA43 i1="01"><s1>INIST</s1><s2>395</s2><s5>354000104676610330</s5></fA43><fA44><s0>0000</s0><s1>© 2002 INIST-CNRS. All rights reserved.</s1></fA44><fA45><s0>1 p.1/4</s0></fA45><fA47 i1="01" i2="1"><s0>02-0510972</s0></fA47><fA60><s1>P</s1></fA60><fA61><s0>A</s0></fA61><fA64 i1="01" i2="1"><s0>Theoretical and Applied Genetics</s0></fA64><fA66 i1="01"><s0>DEU</s0></fA66><fC01 i1="01" l="ENG"><s0>The nuclear genetic variation within and between four sessile (Q. petraea) and six pedunculate (Q. robur) autochthonous Flemish oak populations was investigated with AFLP markers. One sessile and one pedunculate oak population were additionally screened for detailed leaf characteristics using an image analysis system. Principal coordinate analysis on the AFLP data classified the oaks in two main groups, according to their taxonomic status. No species-specific AFLP markers were found using four primer combinations, but marker frequency differences up to 71% were recorded between both species. Analysis of the genetic structure showed that the divergence between species, as observed by ordination, was significant. Both species revealed similar diversity levels. A smaller though significant differentiation was also revealed for both species among populations within species. Molecular and morphology based approaches showed a high degree of consistency. Screening of 60 AFLP primer combinations using a bulking strategy did not allow identifying species-specific markers, which supports the conclusions reached in previous studies. The distribution of genetic variability at the species and at the population level is discussed.</s0></fC01><fC02 i1="01" i2="X"><s0>002A07C02B</s0></fC02><fC03 i1="01" i2="X" l="FRE"><s0>Marqueur moléculaire</s0><s5>01</s5></fC03><fC03 i1="01" i2="X" l="ENG"><s0>Molecular marker</s0><s5>01</s5></fC03><fC03 i1="01" i2="X" l="SPA"><s0>Marcador molecular</s0><s5>01</s5></fC03><fC03 i1="02" i2="X" l="FRE"><s0>Biologie moléculaire</s0><s5>02</s5></fC03><fC03 i1="02" i2="X" l="ENG"><s0>Molecular biology</s0><s5>02</s5></fC03><fC03 i1="02" i2="X" l="SPA"><s0>Biología molecular</s0><s5>02</s5></fC03><fC03 i1="03" i2="X" l="FRE"><s0>Variabilité génétique</s0><s5>03</s5></fC03><fC03 i1="03" i2="X" l="ENG"><s0>Genetic variability</s0><s5>03</s5></fC03><fC03 i1="03" i2="X" l="SPA"><s0>Variabilidad genética</s0><s5>03</s5></fC03><fC03 i1="04" i2="X" l="FRE"><s0>Marqueur AFLP</s0><s5>08</s5></fC03><fC03 i1="04" i2="X" l="ENG"><s0>Amplified fragment length polymorphism marker</s0><s5>08</s5></fC03><fC03 i1="04" i2="X" l="SPA"><s0>Marcador AFLP</s0><s5>08</s5></fC03><fC03 i1="05" i2="X" l="FRE"><s0>Marqueur génétique</s0><s5>09</s5></fC03><fC03 i1="05" i2="X" l="ENG"><s0>Genetic marker</s0><s5>09</s5></fC03><fC03 i1="05" i2="X" l="SPA"><s0>Marcador genético</s0><s5>09</s5></fC03><fC03 i1="06" i2="X" l="FRE"><s0>Différenciation</s0><s5>10</s5></fC03><fC03 i1="06" i2="X" l="ENG"><s0>Differentiation</s0><s5>10</s5></fC03><fC03 i1="06" i2="X" l="SPA"><s0>Diferenciación</s0><s5>10</s5></fC03><fC03 i1="07" i2="X" l="FRE"><s0>Quercus petraea</s0><s2>NS</s2><s5>16</s5></fC03><fC03 i1="07" i2="X" l="ENG"><s0>Quercus petraea</s0><s2>NS</s2><s5>16</s5></fC03><fC03 i1="07" i2="X" l="SPA"><s0>Quercus petraea</s0><s2>NS</s2><s5>16</s5></fC03><fC03 i1="08" i2="X" l="FRE"><s0>Quercus robur</s0><s2>NS</s2><s5>17</s5></fC03><fC03 i1="08" i2="X" l="ENG"><s0>Quercus robur</s0><s2>NS</s2><s5>17</s5></fC03><fC03 i1="08" i2="X" l="SPA"><s0>Quercus robur</s0><s2>NS</s2><s5>17</s5></fC03><fC03 i1="09" i2="X" l="FRE"><s0>Arbre forestier feuillu</s0><s5>67</s5></fC03><fC03 i1="09" i2="X" l="ENG"><s0>Hardwood forest tree</s0><s5>67</s5></fC03><fC03 i1="09" i2="X" l="SPA"><s0>Arbol forestal frondoso</s0><s5>67</s5></fC03><fC07 i1="01" i2="X" l="FRE"><s0>Fagaceae</s0><s2>NS</s2></fC07><fC07 i1="01" i2="X" l="ENG"><s0>Fagaceae</s0><s2>NS</s2></fC07><fC07 i1="01" i2="X" l="SPA"><s0>Fagaceae</s0><s2>NS</s2></fC07><fC07 i1="02" i2="X" l="FRE"><s0>Dicotyledones</s0><s2>NS</s2></fC07><fC07 i1="02" i2="X" l="ENG"><s0>Dicotyledones</s0><s2>NS</s2></fC07><fC07 i1="02" i2="X" l="SPA"><s0>Dicotyledones</s0><s2>NS</s2></fC07><fC07 i1="03" i2="X" l="FRE"><s0>Angiospermae</s0><s2>NS</s2></fC07><fC07 i1="03" i2="X" l="ENG"><s0>Angiospermae</s0><s2>NS</s2></fC07><fC07 i1="03" i2="X" l="SPA"><s0>Angiospermae</s0><s2>NS</s2></fC07><fC07 i1="04" i2="X" l="FRE"><s0>Spermatophyta</s0><s2>NS</s2></fC07><fC07 i1="04" i2="X" l="ENG"><s0>Spermatophyta</s0><s2>NS</s2></fC07><fC07 i1="04" i2="X" l="SPA"><s0>Spermatophyta</s0><s2>NS</s2></fC07><fN21><s1>301</s1></fN21><fN82><s1>PSI</s1></fN82></pA></standard></inist><affiliations><list><country><li>Belgique</li></country><region><li>Province de Flandre-Orientale</li></region><settlement><li>Gand</li></settlement></list><tree><country name="Belgique"><noRegion><name sortKey="Coart, E" sort="Coart, E" uniqKey="Coart E" first="E." last="Coart">E. Coart</name></noRegion><name sortKey="De Loose, M" sort="De Loose, M" uniqKey="De Loose M" first="M." last="De Loose">M. De Loose</name><name sortKey="Lamote, V" sort="Lamote, V" uniqKey="Lamote V" first="V." last="Lamote">V. Lamote</name><name sortKey="Lamote, V" sort="Lamote, V" uniqKey="Lamote V" first="V." last="Lamote">V. Lamote</name><name sortKey="Lootens, P" sort="Lootens, P" uniqKey="Lootens P" first="P." last="Lootens">P. Lootens</name><name sortKey="Roldan Ruiz, I" sort="Roldan Ruiz, I" uniqKey="Roldan Ruiz I" first="I." last="Roldan-Ruiz">I. Roldan-Ruiz</name><name sortKey="Van Bockstaele, E" sort="Van Bockstaele, E" uniqKey="Van Bockstaele E" first="E." last="Van Bockstaele">E. Van Bockstaele</name><name sortKey="Van Bockstaele, E" sort="Van Bockstaele, E" uniqKey="Van Bockstaele E" first="E." last="Van Bockstaele">E. Van Bockstaele</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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