Redisposition of phoma-like anamorphs in Pleosporales
Identifieur interne : 000277 ( Main/Exploration ); précédent : 000276; suivant : 000278Redisposition of phoma-like anamorphs in Pleosporales
Auteurs : J. De Gruyter [Pays-Bas] ; J. H. C. Woudenberg [Pays-Bas] ; M. M. Aveskamp [Pays-Bas] ; G. J. M. Verkley [Pays-Bas] ; J. Z. Groenewald [Pays-Bas] ; P. W. Crous [Pays-Bas]Source :
- Studies in Mycology [ 0166-0616 ] ; 2012.
Abstract
The anamorphic genus
Url:
DOI: 10.3114/sim0004
PubMed: 24014897
PubMed Central: 3713885
Affiliations:
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<author><name sortKey="Aveskamp, M M" sort="Aveskamp, M M" uniqKey="Aveskamp M" first="M. M." last="Aveskamp">M. M. Aveskamp</name>
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<author><name sortKey="Verkley, G J M" sort="Verkley, G J M" uniqKey="Verkley G" first="G. J. M." last="Verkley">G. J. M. Verkley</name>
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<author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name>
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<front><div type="abstract" xml:lang="en"><p id="P6">The anamorphic genus <italic>Phoma</italic>
was subdivided into nine sections based on morphological characters, and included teleomorphs in <italic>Didymella</italic>
, <italic>Leptosphaeria</italic>
, <italic>Pleospora</italic>
and <italic>Mycosphaerella,</italic>
suggesting the polyphyly of the genus. Recent molecular, phylogenetic studies led to the conclusion that <italic>Phoma</italic>
should be restricted to <italic>Didymellaceae</italic>
. The present study focuses on the taxonomy of excluded <italic>Phoma</italic>
species, currently classified in <italic>Phoma</italic>
sections <italic>Plenodomus</italic>
, <italic>Heterospora</italic>
and <italic>Pilosa</italic>
. Species of <italic>Leptosphaeria</italic>
and <italic>Phoma</italic>
section <italic>Plenodomus</italic>
are reclassified in <italic>Plenodomus</italic>
, <italic>Subplenodomus</italic>
gen. nov., <italic>Leptosphaeria</italic>
and <italic>Paraleptosphaeria</italic>
gen. nov., based on the phylogeny determined by analysis of sequence data of the large subunit 28S nrDNA (LSU) and Internal Transcribed Spacer regions 1 & 2 and 5.8S nrDNA (ITS). <italic>Phoma heteromorphospora</italic>
, type species of <italic>Phoma</italic>
section <italic>Heterospora</italic>
, and its allied species <italic>Phoma dimorphospora,</italic>
are transferred to the genus <italic>Heterospora</italic>
stat. nov. The <italic>Phoma acuta</italic>
complex (teleomorph <italic>Leptosphaeria doliolum</italic>
), is revised based on a multilocus sequence analysis of the LSU, ITS, small subunit 18S nrDNA (SSU), β-tubulin (TUB), and chitin synthase 1 (CHS-1) regions. Species of <italic>Phoma</italic>
section <italic>Pilosa</italic>
and allied <italic>Ascochyta</italic>
species were determined to belong to <italic>Pleosporaceae</italic>
based on analysis of actin (ACT) sequence data. Anamorphs that are similar morphologically to <italic>Phoma</italic>
and described in <italic>Ascochyta, Asteromella, Coniothyrium, Plectophomella</italic>
, <italic>Pleurophoma</italic>
and <italic>Pyrenochaeta</italic>
are included in this study. Phoma-like species, which grouped outside the <italic>Pleosporineae</italic>
based on a LSU sequence analysis, are transferred to the genera <italic>Aposphaeria</italic>
, <italic>Paraconiothyrium</italic>
and <italic>Westerdykella</italic>
. The genera <italic>Medicopsis</italic>
gen. nov. and <italic>Nigrograna</italic>
gen. nov. are introduced to accommodate the medically important species formerly known as <italic>Pyrenochaeta romeroi</italic>
and <italic>Pyrenochaeta mackinnonii</italic>
, respectively.</p>
<sec id="S1"><title>Taxonomic novelties:</title>
<p id="P7"><bold>New genera: <italic>Medicopsis</italic>
</bold>
Gruyter, Verkley & Crous, <bold><italic>Nigrograna</italic>
</bold>
Gruyter, Verkley & Crous, <bold><italic>Paraleptosphaeria</italic>
</bold>
Gruyter, Verkley & Crous, <bold><italic>Subplenodomus</italic>
</bold>
Gruyter, Verkley & Crous. <bold>New species: <italic>Aposphaeria</italic>
</bold>
<italic>corallinolutea</italic>
Gruyter, Aveskamp & Verkley, <bold><italic>Paraconiothyrium</italic>
</bold>
<italic>maculicutis</italic>
Verkley & Gruyter. <bold>New combinations: <italic>Coniothyrium</italic>
</bold>
<italic>carteri</italic>
(Gruyter & Boerema) Verkley & Gruyter, <italic>C. dolichi</italic>
(Mohanty) Verkley & Gruyter, <italic>C. glycines</italic>
(R.B. Stewart) Verkley & Gruyter, <italic>C. multiporum</italic>
(V.H. Pawar, P.N. Mathur & Thirum.) Verkley & Gruyter, <italic>C. telephii</italic>
(Allesch.) Verkley & Gruyter, <bold><italic>Heterospora</italic>
</bold>
(Boerema, Gruyter & Noordel.) Gruyter, Verkley & Crous, <italic>H. chenopodii</italic>
(Westend.) Gruyter, Aveskamp & Verkley, <italic>H. dimorphospora</italic>
(Speg.) Gruyter, Aveskamp & Verkley, <bold><italic>Leptosphaeria</italic>
</bold>
<italic>errabunda</italic>
(Desm.) Gruyter, Aveskamp & Verkley, <italic>L. etheridgei</italic>
(L.J. Hutchison & Y. Hirats.) Gruyter, Aveskamp & Verkley, <italic>L. macrocapsa</italic>
(Trail) Gruyter, Aveskamp & Verkley, <italic>L. pedicularis</italic>
(Fuckel) Gruyter, Aveskamp & Verkley, <italic>L. rubefaciens</italic>
(Togliani) Gruyter, Aveskamp & Verkley, <italic>L. sclerotioides</italic>
(Sacc.) Gruyter, Aveskamp & Verkley, <italic>L. sydowii</italic>
(Boerema, Kesteren & Loer.) Gruyter, Aveskamp & Verkley, <italic>L. veronicae</italic>
(Hollós) Gruyter, Aveskamp & Verkley, <bold><italic>Medicopsis</italic>
</bold>
<italic>romeroi</italic>
(Borelli) Gruyter, Verkley & Crous, <bold><italic>Nigrograna</italic>
</bold>
<italic>mackinnonii</italic>
(Borelli) Gruyter, Verkley & Crous, <bold><italic>Paraconiothyrium</italic>
</bold>
<italic>flavescens</italic>
(Gruyter, Noordel. & Boerema) Verkley & Gruyter, <italic>Paracon. fuckelii</italic>
(Sacc.) Verkley & Gruyter, <italic>Paracon. fusco-maculans</italic>
(Sacc.) Verkley & Gruyter, <italic>Paracon. lini</italic>
(Pass.) Verkley & Gruyter, <italic>Paracon. tiliae</italic>
(F. Rudolphi) Verkley & Gruyter, <bold><italic>Paraleptosphaeria</italic>
</bold>
<italic>dryadis</italic>
(Johanson) Gruyter, Aveskamp & Verkley, <italic>Paralept. macrospora</italic>
(Thüm.) Gruyter, Aveskamp & Verkley, <italic>Paralept. nitschkei</italic>
(Rehm ex G. Winter) Gruyter, Aveskamp & Verkley, <italic>Paralept. orobanches</italic>
(Schweinitz: Fr.) Gruyter, Aveskamp & Verkley, <italic>Paralept. praetermissa</italic>
(P. Karst.) Gruyter, Aveskamp & Verkley, <bold><italic>Plenodomus</italic>
</bold>
<italic>agnitus</italic>
(Desm.) Gruyter, Aveskamp & Verkley, <italic>Plen. biglobosus</italic>
(Shoemaker & H. Brun) Gruyter, Aveskamp & Verkley, <italic>Plen. chrysanthemi</italic>
(Zachos, Constantinou & Panag.) Gruyter, Aveskamp & Verkley, <italic>Plen. collinsoniae</italic>
(Dearn. & House) Gruyter, Aveskamp & Verkley, <italic>Plen. confertus</italic>
(Niessl ex Sacc.) Gruyter, Aveskamp & Verkley, <italic>Plen. congestus</italic>
(M.T. Lucas) Gruyter, Aveskamp & Verkley, <italic>Plen. enteroleucus</italic>
(Sacc.) Gruyter, Aveskamp & Verkley<italic>, Plen. fallaciosus</italic>
(Berl.) Gruyter, Aveskamp & Verkley, <italic>Plen. hendersoniae</italic>
(Fuckel) Gruyter, Aveskamp & Verkley, <italic>Plen. influorescens</italic>
(Boerema & Loer.) Gruyter, Aveskamp & Verkley, <italic>Plen. libanotidis</italic>
(Fuckel) Gruyter, Aveskamp & Verkley, <italic>Plen. lindquistii</italic>
(Frezzi) Gruyter, Aveskamp & Verkley, <italic>Plen. lupini</italic>
(Ellis & Everh.) Gruyter, Aveskamp & Verkley, <italic>Plen. pimpinellae</italic>
(Lowen & Sivan.) Gruyter, Aveskamp & Verkley, <italic>Plen. tracheiphilus</italic>
(Petri) Gruyter, Aveskamp & Verkley, <italic>Plen. visci</italic>
(Moesz) Gruyter, Aveskamp & Verkley, <bold><italic>Pleospora</italic>
</bold>
<italic>fallens</italic>
(Sacc.) Gruyter & Verkley, <italic>Pleo. flavigena</italic>
(Constantinou & Aa) Gruyter & Verkley, <italic>Pleo. incompta</italic>
(Sacc. & Martelli) Gruyter & Verkley, <bold><italic>Pyrenochaetopsis pratorum</italic>
</bold>
(P.R. Johnst. & Boerema) Gruyter, Aveskamp & Verkley, <bold><italic>Subplenodomus</italic>
</bold>
<italic>apiicola</italic>
(Kleb.) Gruyter, Aveskamp & Verkley, <italic>Subplen. drobnjacensis</italic>
(Bubák) Gruyter, Aveskamp & Verkley, <italic>Subplen. valerianae</italic>
(Henn.) Gruyter, Aveskamp & Verkley, <italic>Subplen. violicola</italic>
(P. Syd.) Gruyter, Aveskamp & Verkley, <bold><italic>Westerdykella</italic>
</bold>
<italic>capitulum</italic>
(V.H. Pawar, P.N. Mathur & Thirum.) de Gruyter, Aveskamp & Verkley, <italic>W. minutispora</italic>
(P.N. Mathur ex Gruyter & Noordel.) Gruyter, Aveskamp & Verkley. <bold>New names</bold>
: <bold><italic>Pleospora</italic>
</bold>
<italic>angustis</italic>
Gruyter & Verkley, <italic>Pleospora halimiones</italic>
Gruyter & Verkley.</p>
</sec>
</div>
</front>
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<name sortKey="Woudenberg, J H C" sort="Woudenberg, J H C" uniqKey="Woudenberg J" first="J. H. C." last="Woudenberg">J. H. C. Woudenberg</name>
<name sortKey="Woudenberg, J H C" sort="Woudenberg, J H C" uniqKey="Woudenberg J" first="J. H. C." last="Woudenberg">J. H. C. Woudenberg</name>
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