Redisposition of phoma-like anamorphs in Pleosporales
Identifieur interne : 000251 ( Pmc/Curation ); précédent : 000250; suivant : 000252Redisposition of phoma-like anamorphs in Pleosporales
Auteurs : J. De Gruyter [Pays-Bas] ; J. H. C. Woudenberg [Pays-Bas] ; M. M. Aveskamp [Pays-Bas] ; G. J. M. Verkley [Pays-Bas] ; J. Z. Groenewald [Pays-Bas] ; P. W. Crous [Pays-Bas]Source :
- Studies in Mycology [ 0166-0616 ] ; 2012.
Abstract
The anamorphic genus
Url:
DOI: 10.3114/sim0004
PubMed: 24014897
PubMed Central: 3713885
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Redisposition of phoma-like anamorphs in <italic>Pleosporales</italic></title><author><name sortKey="De Gruyter, J" sort="De Gruyter, J" uniqKey="De Gruyter J" first="J." last="De Gruyter">J. De Gruyter</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="A3"> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea></affiliation></author><author><name sortKey="Woudenberg, J H C" sort="Woudenberg, J H C" uniqKey="Woudenberg J" first="J. H. C." last="Woudenberg">J. H. C. Woudenberg</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="A2"> National Reference Centre, National Plant Protection Organization, P.O. Box 9102, 6700 HC Wageningen, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> National Reference Centre, National Plant Protection Organization, P.O. Box 9102, 6700 HC Wageningen</wicri:regionArea></affiliation></author><author><name sortKey="Aveskamp, M M" sort="Aveskamp, M M" uniqKey="Aveskamp M" first="M. M." last="Aveskamp">M. M. Aveskamp</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht</wicri:regionArea></affiliation></author><author><name sortKey="Verkley, G J M" sort="Verkley, G J M" uniqKey="Verkley G" first="G. J. M." last="Verkley">G. J. M. Verkley</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht</wicri:regionArea></affiliation></author><author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht</wicri:regionArea></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="A3"> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="A4"> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24014897</idno><idno type="pmc">3713885</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713885</idno><idno type="RBID">PMC:3713885</idno><idno type="doi">10.3114/sim0004</idno><date when="2012">2012</date><idno type="wicri:Area/Pmc/Corpus">000251</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000251</idno><idno type="wicri:Area/Pmc/Curation">000251</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000251</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Redisposition of phoma-like anamorphs in <italic>Pleosporales</italic></title><author><name sortKey="De Gruyter, J" sort="De Gruyter, J" uniqKey="De Gruyter J" first="J." last="De Gruyter">J. De Gruyter</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="A3"> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea></affiliation></author><author><name sortKey="Woudenberg, J H C" sort="Woudenberg, J H C" uniqKey="Woudenberg J" first="J. H. C." last="Woudenberg">J. H. C. Woudenberg</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="A2"> National Reference Centre, National Plant Protection Organization, P.O. Box 9102, 6700 HC Wageningen, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> National Reference Centre, National Plant Protection Organization, P.O. Box 9102, 6700 HC Wageningen</wicri:regionArea></affiliation></author><author><name sortKey="Aveskamp, M M" sort="Aveskamp, M M" uniqKey="Aveskamp M" first="M. M." last="Aveskamp">M. M. Aveskamp</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht</wicri:regionArea></affiliation></author><author><name sortKey="Verkley, G J M" sort="Verkley, G J M" uniqKey="Verkley G" first="G. J. M." last="Verkley">G. J. M. Verkley</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht</wicri:regionArea></affiliation></author><author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht</wicri:regionArea></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="A3"> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="A4"> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht</wicri:regionArea></affiliation></author></analytic><series><title level="j">Studies in Mycology</title><idno type="ISSN">0166-0616</idno><idno type="eISSN">1872-9797</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="P6">The anamorphic genus <italic>Phoma</italic> was subdivided into nine sections based on morphological characters, and included teleomorphs in <italic>Didymella</italic>, <italic>Leptosphaeria</italic>, <italic>Pleospora</italic> and <italic>Mycosphaerella,</italic> suggesting the polyphyly of the genus. Recent molecular, phylogenetic studies led to the conclusion that <italic>Phoma</italic> should be restricted to <italic>Didymellaceae</italic>. The present study focuses on the taxonomy of excluded <italic>Phoma</italic> species, currently classified in <italic>Phoma</italic> sections <italic>Plenodomus</italic>, <italic>Heterospora</italic> and <italic>Pilosa</italic>. Species of <italic>Leptosphaeria</italic> and <italic>Phoma</italic> section <italic>Plenodomus</italic> are reclassified in <italic>Plenodomus</italic>, <italic>Subplenodomus</italic> gen. nov., <italic>Leptosphaeria</italic> and <italic>Paraleptosphaeria</italic> gen. nov., based on the phylogeny determined by analysis of sequence data of the large subunit 28S nrDNA (LSU) and Internal Transcribed Spacer regions 1 & 2 and 5.8S nrDNA (ITS). <italic>Phoma heteromorphospora</italic>, type species of <italic>Phoma</italic> section <italic>Heterospora</italic>, and its allied species <italic>Phoma dimorphospora,</italic> are transferred to the genus <italic>Heterospora</italic> stat. nov. The <italic>Phoma acuta</italic> complex (teleomorph <italic>Leptosphaeria doliolum</italic>), is revised based on a multilocus sequence analysis of the LSU, ITS, small subunit 18S nrDNA (SSU), β-tubulin (TUB), and chitin synthase 1 (CHS-1) regions. Species of <italic>Phoma</italic> section <italic>Pilosa</italic> and allied <italic>Ascochyta</italic> species were determined to belong to <italic>Pleosporaceae</italic> based on analysis of actin (ACT) sequence data. Anamorphs that are similar morphologically to <italic>Phoma</italic> and described in <italic>Ascochyta, Asteromella, Coniothyrium, Plectophomella</italic>, <italic>Pleurophoma</italic> and <italic>Pyrenochaeta</italic> are included in this study. Phoma-like species, which grouped outside the <italic>Pleosporineae</italic> based on a LSU sequence analysis, are transferred to the genera <italic>Aposphaeria</italic>, <italic>Paraconiothyrium</italic> and <italic>Westerdykella</italic>. The genera <italic>Medicopsis</italic> gen. nov. and <italic>Nigrograna</italic> gen. nov. are introduced to accommodate the medically important species formerly known as <italic>Pyrenochaeta romeroi</italic> and <italic>Pyrenochaeta mackinnonii</italic>, respectively.</p><sec id="S1"><title>Taxonomic novelties:</title><p id="P7"><bold>New genera: <italic>Medicopsis</italic></bold> Gruyter, Verkley & Crous, <bold><italic>Nigrograna</italic></bold> Gruyter, Verkley & Crous, <bold><italic>Paraleptosphaeria</italic></bold> Gruyter, Verkley & Crous, <bold><italic>Subplenodomus</italic></bold> Gruyter, Verkley & Crous. <bold>New species: <italic>Aposphaeria</italic></bold><italic>corallinolutea</italic> Gruyter, Aveskamp & Verkley, <bold><italic>Paraconiothyrium</italic></bold><italic>maculicutis</italic> Verkley & Gruyter. <bold>New combinations: <italic>Coniothyrium</italic></bold><italic>carteri</italic> (Gruyter & Boerema) Verkley & Gruyter, <italic>C. dolichi</italic> (Mohanty) Verkley & Gruyter, <italic>C. glycines</italic> (R.B. Stewart) Verkley & Gruyter, <italic>C. multiporum</italic> (V.H. Pawar, P.N. Mathur & Thirum.) Verkley & Gruyter, <italic>C. telephii</italic> (Allesch.) Verkley & Gruyter, <bold><italic>Heterospora</italic></bold> (Boerema, Gruyter & Noordel.) Gruyter, Verkley & Crous, <italic>H. chenopodii</italic> (Westend.) Gruyter, Aveskamp & Verkley, <italic>H. dimorphospora</italic> (Speg.) Gruyter, Aveskamp & Verkley, <bold><italic>Leptosphaeria</italic></bold><italic>errabunda</italic> (Desm.) Gruyter, Aveskamp & Verkley, <italic>L. etheridgei</italic> (L.J. Hutchison & Y. Hirats.) Gruyter, Aveskamp & Verkley, <italic>L. macrocapsa</italic> (Trail) Gruyter, Aveskamp & Verkley, <italic>L. pedicularis</italic> (Fuckel) Gruyter, Aveskamp & Verkley, <italic>L. rubefaciens</italic> (Togliani) Gruyter, Aveskamp & Verkley, <italic>L. sclerotioides</italic> (Sacc.) Gruyter, Aveskamp & Verkley, <italic>L. sydowii</italic> (Boerema, Kesteren & Loer.) Gruyter, Aveskamp & Verkley, <italic>L. veronicae</italic> (Hollós) Gruyter, Aveskamp & Verkley, <bold><italic>Medicopsis</italic></bold><italic>romeroi</italic> (Borelli) Gruyter, Verkley & Crous, <bold><italic>Nigrograna</italic></bold><italic>mackinnonii</italic> (Borelli) Gruyter, Verkley & Crous, <bold><italic>Paraconiothyrium</italic></bold><italic>flavescens</italic> (Gruyter, Noordel. & Boerema) Verkley & Gruyter, <italic>Paracon. fuckelii</italic> (Sacc.) Verkley & Gruyter, <italic>Paracon. fusco-maculans</italic> (Sacc.) Verkley & Gruyter, <italic>Paracon. lini</italic> (Pass.) Verkley & Gruyter, <italic>Paracon. tiliae</italic> (F. Rudolphi) Verkley & Gruyter, <bold><italic>Paraleptosphaeria</italic></bold><italic>dryadis</italic> (Johanson) Gruyter, Aveskamp & Verkley, <italic>Paralept. macrospora</italic> (Thüm.) Gruyter, Aveskamp & Verkley, <italic>Paralept. nitschkei</italic> (Rehm ex G. Winter) Gruyter, Aveskamp & Verkley, <italic>Paralept. orobanches</italic> (Schweinitz: Fr.) Gruyter, Aveskamp & Verkley, <italic>Paralept. praetermissa</italic> (P. Karst.) Gruyter, Aveskamp & Verkley, <bold><italic>Plenodomus</italic></bold><italic>agnitus</italic> (Desm.) Gruyter, Aveskamp & Verkley, <italic>Plen. biglobosus</italic> (Shoemaker & H. Brun) Gruyter, Aveskamp & Verkley, <italic>Plen. chrysanthemi</italic> (Zachos, Constantinou & Panag.) Gruyter, Aveskamp & Verkley, <italic>Plen. collinsoniae</italic> (Dearn. & House) Gruyter, Aveskamp & Verkley, <italic>Plen. confertus</italic> (Niessl ex Sacc.) Gruyter, Aveskamp & Verkley, <italic>Plen. congestus</italic> (M.T. Lucas) Gruyter, Aveskamp & Verkley, <italic>Plen. enteroleucus</italic> (Sacc.) Gruyter, Aveskamp & Verkley<italic>, Plen. fallaciosus</italic> (Berl.) Gruyter, Aveskamp & Verkley, <italic>Plen. hendersoniae</italic> (Fuckel) Gruyter, Aveskamp & Verkley, <italic>Plen. influorescens</italic> (Boerema & Loer.) Gruyter, Aveskamp & Verkley, <italic>Plen. libanotidis</italic> (Fuckel) Gruyter, Aveskamp & Verkley, <italic>Plen. lindquistii</italic> (Frezzi) Gruyter, Aveskamp & Verkley, <italic>Plen. lupini</italic> (Ellis & Everh.) Gruyter, Aveskamp & Verkley, <italic>Plen. pimpinellae</italic> (Lowen & Sivan.) Gruyter, Aveskamp & Verkley, <italic>Plen. tracheiphilus</italic> (Petri) Gruyter, Aveskamp & Verkley, <italic>Plen. visci</italic> (Moesz) Gruyter, Aveskamp & Verkley, <bold><italic>Pleospora</italic></bold><italic>fallens</italic> (Sacc.) Gruyter & Verkley, <italic>Pleo. flavigena</italic> (Constantinou & Aa) Gruyter & Verkley, <italic>Pleo. incompta</italic> (Sacc. & Martelli) Gruyter & Verkley, <bold><italic>Pyrenochaetopsis pratorum</italic></bold> (P.R. Johnst. & Boerema) Gruyter, Aveskamp & Verkley, <bold><italic>Subplenodomus</italic></bold><italic>apiicola</italic> (Kleb.) Gruyter, Aveskamp & Verkley, <italic>Subplen. drobnjacensis</italic> (Bubák) Gruyter, Aveskamp & Verkley, <italic>Subplen. valerianae</italic> (Henn.) Gruyter, Aveskamp & Verkley, <italic>Subplen. violicola</italic> (P. Syd.) Gruyter, Aveskamp & Verkley, <bold><italic>Westerdykella</italic></bold><italic>capitulum</italic> (V.H. Pawar, P.N. Mathur & Thirum.) de Gruyter, Aveskamp & Verkley, <italic>W. minutispora</italic> (P.N. Mathur ex Gruyter & Noordel.) Gruyter, Aveskamp & Verkley. <bold>New names</bold>: <bold><italic>Pleospora</italic></bold><italic>angustis</italic> Gruyter & Verkley, <italic>Pleospora halimiones</italic> Gruyter & Verkley.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Aa, Ha Van Der" uniqKey="Aa H">HA van der Aa</name></author><author><name sortKey="Kesteren, Ha Van" uniqKey="Kesteren H">HA van Kesteren</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Arx, Ja Von" uniqKey="Arx J">JA von Arx</name></author><author><name sortKey="Storm, Pk" uniqKey="Storm P">PK Storm</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Aveskamp, Mm" uniqKey="Aveskamp M">MM Aveskamp</name></author><author><name sortKey="Gruyter, J De" uniqKey="Gruyter J">J de Gruyter</name></author><author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Aveskamp, Mm" uniqKey="Aveskamp M">MM Aveskamp</name></author><author><name sortKey="Gruyter, J De" uniqKey="Gruyter J">J de Gruyter</name></author><author><name sortKey="Woudenberg, Jhc" uniqKey="Woudenberg J">JHC Woudenberg</name></author><author><name sortKey="Verkley, Gjm" uniqKey="Verkley G">GJM Verkley</name></author><author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Aveskamp, Mm" uniqKey="Aveskamp M">MM Aveskamp</name></author><author><name sortKey="Verkley, Gjm" uniqKey="Verkley G">GJM Verkley</name></author><author><name sortKey="Gruyter, J De" uniqKey="Gruyter J">J de Gruyter</name></author><author><name sortKey="Murace, Ma" uniqKey="Murace M">MA Murace</name></author><author><name sortKey="Perell, A" uniqKey="Perell A">A Perelló</name></author><author><name sortKey="Woudenberg, Jhc" 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Stud Mycol</journal-id><journal-id journal-id-type="iso-abbrev">Stud. Mycol</journal-id><journal-id journal-id-type="hwp">simycol</journal-id><journal-title-group><journal-title>Studies in Mycology</journal-title></journal-title-group><issn pub-type="ppub">0166-0616</issn><issn pub-type="epub">1872-9797</issn><publisher><publisher-name>CBS Fungal Biodiversity Centre</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">24014897</article-id><article-id pub-id-type="pmc">3713885</article-id><article-id pub-id-type="doi">10.3114/sim0004</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group></article-categories><title-group><article-title>Redisposition of phoma-like anamorphs in <italic>Pleosporales</italic></article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>de Gruyter</surname><given-names>J.</given-names></name><xref ref-type="aff" rid="A1">1</xref><xref ref-type="aff" rid="A3">3</xref><xref ref-type="corresp" rid="cor1">*</xref></contrib><contrib contrib-type="author"><name><surname>Woudenberg</surname><given-names>J.H.C.</given-names></name><xref ref-type="aff" rid="A1">1</xref><xref ref-type="aff" rid="A2">2</xref></contrib><contrib contrib-type="author"><name><surname>Aveskamp</surname><given-names>M.M.</given-names></name><xref ref-type="aff" rid="A1">1</xref></contrib><contrib contrib-type="author"><name><surname>Verkley</surname><given-names>G.J.M.</given-names></name><xref ref-type="aff" rid="A1">1</xref></contrib><contrib contrib-type="author"><name><surname>Groenewald</surname><given-names>J.Z.</given-names></name><xref ref-type="aff" rid="A1">1</xref></contrib><contrib contrib-type="author"><name><surname>Crous</surname><given-names>P.W.</given-names></name><xref ref-type="aff" rid="A1">1</xref><xref ref-type="aff" rid="A3">3</xref><xref ref-type="aff" rid="A4">4</xref></contrib><aff id="A1"><label>1</label> CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</aff><aff id="A2"><label>2</label> National Reference Centre, National Plant Protection Organization, P.O. Box 9102, 6700 HC Wageningen, The Netherlands</aff><aff id="A3"><label>3</label> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</aff><aff id="A4"><label>4</label> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands</aff></contrib-group><author-notes><corresp id="cor1"><label>*</label><italic>Correspondence</italic>: Hans de Gruyter, <email>j.de.gruyter@minlnv.nl</email></corresp></author-notes><pub-date pub-type="ppub"><day>30</day><month>6</month><year>2013</year></pub-date><pub-date pub-type="epub"><day>6</day><month>6</month><year>2012</year></pub-date><volume>75</volume><issue>1</issue><issue-title>Phytopathogenic Dothideomycetes</issue-title><fpage>1</fpage><lpage>36</lpage><permissions><copyright-statement>Copyright 2013 CBS-KNAW Fungal Biodiversity Centre</copyright-statement><copyright-year>2013</copyright-year><license license-type="creative-commons"><license-p>You are free to share - to copy, distribute and transmit the work, under the following conditions:</license-p><license-p><bold>Attribution:</bold> You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work).</license-p><license-p><bold>Non-commercial:</bold> You may not use this work for commercial purposes.</license-p><license-p><bold>No derivative works:</bold> You may not alter, transform, or build upon this work.</license-p><license-p>For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at <uri xlink:type="simple" xlink:href="http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode">http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode</uri>. Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights.</license-p></license></permissions><self-uri xlink:title="pdf" xlink:type="simple" xlink:href="1.pdf"></self-uri><abstract><p id="P6">The anamorphic genus <italic>Phoma</italic> was subdivided into nine sections based on morphological characters, and included teleomorphs in <italic>Didymella</italic>, <italic>Leptosphaeria</italic>, <italic>Pleospora</italic> and <italic>Mycosphaerella,</italic> suggesting the polyphyly of the genus. Recent molecular, phylogenetic studies led to the conclusion that <italic>Phoma</italic> should be restricted to <italic>Didymellaceae</italic>. The present study focuses on the taxonomy of excluded <italic>Phoma</italic> species, currently classified in <italic>Phoma</italic> sections <italic>Plenodomus</italic>, <italic>Heterospora</italic> and <italic>Pilosa</italic>. Species of <italic>Leptosphaeria</italic> and <italic>Phoma</italic> section <italic>Plenodomus</italic> are reclassified in <italic>Plenodomus</italic>, <italic>Subplenodomus</italic> gen. nov., <italic>Leptosphaeria</italic> and <italic>Paraleptosphaeria</italic> gen. nov., based on the phylogeny determined by analysis of sequence data of the large subunit 28S nrDNA (LSU) and Internal Transcribed Spacer regions 1 & 2 and 5.8S nrDNA (ITS). <italic>Phoma heteromorphospora</italic>, type species of <italic>Phoma</italic> section <italic>Heterospora</italic>, and its allied species <italic>Phoma dimorphospora,</italic> are transferred to the genus <italic>Heterospora</italic> stat. nov. The <italic>Phoma acuta</italic> complex (teleomorph <italic>Leptosphaeria doliolum</italic>), is revised based on a multilocus sequence analysis of the LSU, ITS, small subunit 18S nrDNA (SSU), β-tubulin (TUB), and chitin synthase 1 (CHS-1) regions. Species of <italic>Phoma</italic> section <italic>Pilosa</italic> and allied <italic>Ascochyta</italic> species were determined to belong to <italic>Pleosporaceae</italic> based on analysis of actin (ACT) sequence data. Anamorphs that are similar morphologically to <italic>Phoma</italic> and described in <italic>Ascochyta, Asteromella, Coniothyrium, Plectophomella</italic>, <italic>Pleurophoma</italic> and <italic>Pyrenochaeta</italic> are included in this study. Phoma-like species, which grouped outside the <italic>Pleosporineae</italic> based on a LSU sequence analysis, are transferred to the genera <italic>Aposphaeria</italic>, <italic>Paraconiothyrium</italic> and <italic>Westerdykella</italic>. The genera <italic>Medicopsis</italic> gen. nov. and <italic>Nigrograna</italic> gen. nov. are introduced to accommodate the medically important species formerly known as <italic>Pyrenochaeta romeroi</italic> and <italic>Pyrenochaeta mackinnonii</italic>, respectively.</p><sec id="S1"><title>Taxonomic novelties:</title><p id="P7"><bold>New genera: <italic>Medicopsis</italic></bold> Gruyter, Verkley & Crous, <bold><italic>Nigrograna</italic></bold> Gruyter, Verkley & Crous, <bold><italic>Paraleptosphaeria</italic></bold> Gruyter, Verkley & Crous, <bold><italic>Subplenodomus</italic></bold> Gruyter, Verkley & Crous. <bold>New species: <italic>Aposphaeria</italic></bold><italic>corallinolutea</italic> Gruyter, Aveskamp & Verkley, <bold><italic>Paraconiothyrium</italic></bold><italic>maculicutis</italic> Verkley & Gruyter. <bold>New combinations: <italic>Coniothyrium</italic></bold><italic>carteri</italic> (Gruyter & Boerema) Verkley & Gruyter, <italic>C. dolichi</italic> (Mohanty) Verkley & Gruyter, <italic>C. glycines</italic> (R.B. Stewart) Verkley & Gruyter, <italic>C. multiporum</italic> (V.H. Pawar, P.N. Mathur & Thirum.) Verkley & Gruyter, <italic>C. telephii</italic> (Allesch.) Verkley & Gruyter, <bold><italic>Heterospora</italic></bold> (Boerema, Gruyter & Noordel.) Gruyter, Verkley & Crous, <italic>H. chenopodii</italic> (Westend.) Gruyter, Aveskamp & Verkley, <italic>H. dimorphospora</italic> (Speg.) Gruyter, Aveskamp & Verkley, <bold><italic>Leptosphaeria</italic></bold><italic>errabunda</italic> (Desm.) Gruyter, Aveskamp & Verkley, <italic>L. etheridgei</italic> (L.J. Hutchison & Y. Hirats.) Gruyter, Aveskamp & Verkley, <italic>L. macrocapsa</italic> (Trail) Gruyter, Aveskamp & Verkley, <italic>L. pedicularis</italic> (Fuckel) Gruyter, Aveskamp & Verkley, <italic>L. rubefaciens</italic> (Togliani) Gruyter, Aveskamp & Verkley, <italic>L. sclerotioides</italic> (Sacc.) Gruyter, Aveskamp & Verkley, <italic>L. sydowii</italic> (Boerema, Kesteren & Loer.) Gruyter, Aveskamp & Verkley, <italic>L. veronicae</italic> (Hollós) Gruyter, Aveskamp & Verkley, <bold><italic>Medicopsis</italic></bold><italic>romeroi</italic> (Borelli) Gruyter, Verkley & Crous, <bold><italic>Nigrograna</italic></bold><italic>mackinnonii</italic> (Borelli) Gruyter, Verkley & Crous, <bold><italic>Paraconiothyrium</italic></bold><italic>flavescens</italic> (Gruyter, Noordel. & Boerema) Verkley & Gruyter, <italic>Paracon. fuckelii</italic> (Sacc.) Verkley & Gruyter, <italic>Paracon. fusco-maculans</italic> (Sacc.) Verkley & Gruyter, <italic>Paracon. lini</italic> (Pass.) Verkley & Gruyter, <italic>Paracon. tiliae</italic> (F. Rudolphi) Verkley & Gruyter, <bold><italic>Paraleptosphaeria</italic></bold><italic>dryadis</italic> (Johanson) Gruyter, Aveskamp & Verkley, <italic>Paralept. macrospora</italic> (Thüm.) Gruyter, Aveskamp & Verkley, <italic>Paralept. nitschkei</italic> (Rehm ex G. Winter) Gruyter, Aveskamp & Verkley, <italic>Paralept. orobanches</italic> (Schweinitz: Fr.) Gruyter, Aveskamp & Verkley, <italic>Paralept. praetermissa</italic> (P. Karst.) Gruyter, Aveskamp & Verkley, <bold><italic>Plenodomus</italic></bold><italic>agnitus</italic> (Desm.) Gruyter, Aveskamp & Verkley, <italic>Plen. biglobosus</italic> (Shoemaker & H. Brun) Gruyter, Aveskamp & Verkley, <italic>Plen. chrysanthemi</italic> (Zachos, Constantinou & Panag.) Gruyter, Aveskamp & Verkley, <italic>Plen. collinsoniae</italic> (Dearn. & House) Gruyter, Aveskamp & Verkley, <italic>Plen. confertus</italic> (Niessl ex Sacc.) Gruyter, Aveskamp & Verkley, <italic>Plen. congestus</italic> (M.T. Lucas) Gruyter, Aveskamp & Verkley, <italic>Plen. enteroleucus</italic> (Sacc.) Gruyter, Aveskamp & Verkley<italic>, Plen. fallaciosus</italic> (Berl.) Gruyter, Aveskamp & Verkley, <italic>Plen. hendersoniae</italic> (Fuckel) Gruyter, Aveskamp & Verkley, <italic>Plen. influorescens</italic> (Boerema & Loer.) Gruyter, Aveskamp & Verkley, <italic>Plen. libanotidis</italic> (Fuckel) Gruyter, Aveskamp & Verkley, <italic>Plen. lindquistii</italic> (Frezzi) Gruyter, Aveskamp & Verkley, <italic>Plen. lupini</italic> (Ellis & Everh.) Gruyter, Aveskamp & Verkley, <italic>Plen. pimpinellae</italic> (Lowen & Sivan.) Gruyter, Aveskamp & Verkley, <italic>Plen. tracheiphilus</italic> (Petri) Gruyter, Aveskamp & Verkley, <italic>Plen. visci</italic> (Moesz) Gruyter, Aveskamp & Verkley, <bold><italic>Pleospora</italic></bold><italic>fallens</italic> (Sacc.) Gruyter & Verkley, <italic>Pleo. flavigena</italic> (Constantinou & Aa) Gruyter & Verkley, <italic>Pleo. incompta</italic> (Sacc. & Martelli) Gruyter & Verkley, <bold><italic>Pyrenochaetopsis pratorum</italic></bold> (P.R. Johnst. & Boerema) Gruyter, Aveskamp & Verkley, <bold><italic>Subplenodomus</italic></bold><italic>apiicola</italic> (Kleb.) Gruyter, Aveskamp & Verkley, <italic>Subplen. drobnjacensis</italic> (Bubák) Gruyter, Aveskamp & Verkley, <italic>Subplen. valerianae</italic> (Henn.) Gruyter, Aveskamp & Verkley, <italic>Subplen. violicola</italic> (P. Syd.) Gruyter, Aveskamp & Verkley, <bold><italic>Westerdykella</italic></bold><italic>capitulum</italic> (V.H. Pawar, P.N. Mathur & Thirum.) de Gruyter, Aveskamp & Verkley, <italic>W. minutispora</italic> (P.N. Mathur ex Gruyter & Noordel.) Gruyter, Aveskamp & Verkley. <bold>New names</bold>: <bold><italic>Pleospora</italic></bold><italic>angustis</italic> Gruyter & Verkley, <italic>Pleospora halimiones</italic> Gruyter & Verkley.</p></sec></abstract><kwd-group><title>Key words:</title><kwd>coelomycetes</kwd><kwd><italic>Coniothyriaceae</italic></kwd><kwd><italic>Cucurbitariaceae</italic></kwd><kwd><italic>Leptosphaeriaceae</italic></kwd><kwd><italic>Melanommataceae</italic></kwd><kwd>molecular phylogeny</kwd><kwd><italic>Montagnulaceae</italic></kwd><kwd><italic>Phaeosphaeriaceae</italic></kwd><kwd><italic>Pleosporaceae</italic></kwd><kwd><italic>Sporormiaceae</italic></kwd><kwd>taxonomy</kwd><kwd><italic>Trematosphaeriaceae</italic></kwd></kwd-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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