Genetic Variability of Wild Cherry (Prunus avium L.) Seed Stands in Slovenia as Revealed by Nuclear Microsatellite Loci
Identifieur interne : 000285 ( Main/Exploration ); précédent : 000284; suivant : 000286Genetic Variability of Wild Cherry (Prunus avium L.) Seed Stands in Slovenia as Revealed by Nuclear Microsatellite Loci
Auteurs : Kristjan Jarni [Slovénie] ; Bart De Cuyper [Belgique] ; Robert Brus [Slovénie]Source :
- PLoS ONE [ 1932-6203 ] ; 2012.
Abstract
Microsatellite markers were used to describe the genetic variability of four seed stands of wild cherry (
Url:
DOI: 10.1371/journal.pone.0041231
PubMed: 22911762
PubMed Central: 3401173
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000202
- to stream Pmc, to step Curation: 000202
- to stream Pmc, to step Checkpoint: 000182
- to stream Ncbi, to step Merge: 000126
- to stream Ncbi, to step Curation: 000126
- to stream Ncbi, to step Checkpoint: 000126
- to stream Main, to step Merge: 000287
- to stream Main, to step Curation: 000285
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic Variability of Wild Cherry (<italic>Prunus avium</italic>
L.) Seed Stands in Slovenia as Revealed by Nuclear Microsatellite Loci</title>
<author><name sortKey="Jarni, Kristjan" sort="Jarni, Kristjan" uniqKey="Jarni K" first="Kristjan" last="Jarni">Kristjan Jarni</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia</addr-line>
</nlm:aff>
<country xml:lang="fr">Slovénie</country>
<wicri:regionArea>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana</wicri:regionArea>
<wicri:noRegion>Ljubljana</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="De Cuyper, Bart" sort="De Cuyper, Bart" uniqKey="De Cuyper B" first="Bart" last="De Cuyper">Bart De Cuyper</name>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Department of Management and Sustainable Use, Research Institute for Nature and Forest, Geraardsbergen, Belgium</addr-line>
</nlm:aff>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Department of Management and Sustainable Use, Research Institute for Nature and Forest, Geraardsbergen</wicri:regionArea>
<wicri:noRegion>Geraardsbergen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Brus, Robert" sort="Brus, Robert" uniqKey="Brus R" first="Robert" last="Brus">Robert Brus</name>
<affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia</addr-line>
</nlm:aff>
<country xml:lang="fr">Slovénie</country>
<wicri:regionArea>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana</wicri:regionArea>
<wicri:noRegion>Ljubljana</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">22911762</idno>
<idno type="pmc">3401173</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3401173</idno>
<idno type="RBID">PMC:3401173</idno>
<idno type="doi">10.1371/journal.pone.0041231</idno>
<date when="2012">2012</date>
<idno type="wicri:Area/Pmc/Corpus">000202</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000202</idno>
<idno type="wicri:Area/Pmc/Curation">000202</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000202</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000182</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000182</idno>
<idno type="wicri:Area/Ncbi/Merge">000126</idno>
<idno type="wicri:Area/Ncbi/Curation">000126</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000126</idno>
<idno type="wicri:Area/Main/Merge">000287</idno>
<idno type="wicri:Area/Main/Curation">000285</idno>
<idno type="wicri:Area/Main/Exploration">000285</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genetic Variability of Wild Cherry (<italic>Prunus avium</italic>
L.) Seed Stands in Slovenia as Revealed by Nuclear Microsatellite Loci</title>
<author><name sortKey="Jarni, Kristjan" sort="Jarni, Kristjan" uniqKey="Jarni K" first="Kristjan" last="Jarni">Kristjan Jarni</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia</addr-line>
</nlm:aff>
<country xml:lang="fr">Slovénie</country>
<wicri:regionArea>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana</wicri:regionArea>
<wicri:noRegion>Ljubljana</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="De Cuyper, Bart" sort="De Cuyper, Bart" uniqKey="De Cuyper B" first="Bart" last="De Cuyper">Bart De Cuyper</name>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Department of Management and Sustainable Use, Research Institute for Nature and Forest, Geraardsbergen, Belgium</addr-line>
</nlm:aff>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Department of Management and Sustainable Use, Research Institute for Nature and Forest, Geraardsbergen</wicri:regionArea>
<wicri:noRegion>Geraardsbergen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Brus, Robert" sort="Brus, Robert" uniqKey="Brus R" first="Robert" last="Brus">Robert Brus</name>
<affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia</addr-line>
</nlm:aff>
<country xml:lang="fr">Slovénie</country>
<wicri:regionArea>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana</wicri:regionArea>
<wicri:noRegion>Ljubljana</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">PLoS ONE</title>
<idno type="eISSN">1932-6203</idno>
<imprint><date when="2012">2012</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>Microsatellite markers were used to describe the genetic variability of four seed stands of wild cherry (<italic>Prunus avium</italic>
L.). One hundred and thirty one individuals were genotyped at ten nuclear microsatellite loci. Total genetic diversity was high (<italic>H</italic>
<sub>E</sub>
= 0.704), while differences between stands were small but significant (<italic>F</italic>
<sub>ST</sub>
= 0.053, <italic>G′</italic>
<sub>ST</sub>
= 0.234). There was a significant amount of clonal reproduction in one stand, with only 11 genotypes identified among 36 trees. One stand showed a significant excess (<italic>F</italic>
<sub>IS</sub>
= −0.044) of heterozygosity, and one showed a deficit (<italic>F</italic>
<sub>IS</sub>
= 0.044). Our results demonstrate the importance of taking into account the biological and genetic characteristics of species in forest management, especially when determining a new seed stand. The small genetic differences found between seed stands indicate that a large number of stands are not required. However, they should be carefully selected and should possess adequate genetic variability to ensure low relatedness between seed trees.</p>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Russell, K" uniqKey="Russell K">K Russell</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mohanty, A" uniqKey="Mohanty A">A Mohanty</name>
</author>
<author><name sortKey="Martin, Jp" uniqKey="Martin J">JP Martín</name>
</author>
<author><name sortKey="Aguinagalde, I" uniqKey="Aguinagalde I">I Aguinagalde</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Schueler, S" uniqKey="Schueler S">S Schueler</name>
</author>
<author><name sortKey="Tusch, A" uniqKey="Tusch A">A Tusch</name>
</author>
<author><name sortKey="Scholz, F" uniqKey="Scholz F">F Scholz</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Guarino, C" uniqKey="Guarino C">C Guarino</name>
</author>
<author><name sortKey="Santoro, S" uniqKey="Santoro S">S Santoro</name>
</author>
<author><name sortKey="De Simone, L" uniqKey="De Simone L">L De Simone</name>
</author>
<author><name sortKey="Cipriani, G" uniqKey="Cipriani G">G Cipriani</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lacis, G" uniqKey="Lacis G">G Lacis</name>
</author>
<author><name sortKey="Rashal, I" uniqKey="Rashal I">I Rashal</name>
</author>
<author><name sortKey="Ruisa, S" uniqKey="Ruisa S">S Ruisa</name>
</author>
<author><name sortKey="Trajkovski, V" uniqKey="Trajkovski V">V Trajkovski</name>
</author>
<author><name sortKey="Iezzoni, Af" uniqKey="Iezzoni A">AF Iezzoni</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kobliha, J" uniqKey="Kobliha J">J Kobliha</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Pravilnik O Dolo Itvi Provenien Nih, Obmo Ij" uniqKey="Pravilnik O Dolo Itvi Provenien Nih O">območij Pravilnik o določitvi provenienčnih</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ducci, F" uniqKey="Ducci F">F Ducci</name>
</author>
<author><name sortKey="Santi, F" uniqKey="Santi F">F Santi</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Vekemans, X" uniqKey="Vekemans X">X Vekemans</name>
</author>
<author><name sortKey="Hardy, Oj" uniqKey="Hardy O">OJ Hardy</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Stoeckel, S" uniqKey="Stoeckel S">S Stoeckel</name>
</author>
<author><name sortKey="Grange, J" uniqKey="Grange J">J Grange</name>
</author>
<author><name sortKey="Fernandez Manjarres, Jf" uniqKey="Fernandez Manjarres J">JF Fernández-Manjarres</name>
</author>
<author><name sortKey="Bilger, I" uniqKey="Bilger I">I Bilger</name>
</author>
<author><name sortKey="Frascaria Lacoste, N" uniqKey="Frascaria Lacoste N">N Frascaria-Lacoste</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Vaughan, Sp" uniqKey="Vaughan S">SP Vaughan</name>
</author>
<author><name sortKey="Cottrell, Je" uniqKey="Cottrell J">JE Cottrell</name>
</author>
<author><name sortKey="Moodley, Dj" uniqKey="Moodley D">DJ Moodley</name>
</author>
<author><name sortKey="Connolly, T" uniqKey="Connolly T">T Connolly</name>
</author>
<author><name sortKey="Russell, K" uniqKey="Russell K">K Russell</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Guarino, C" uniqKey="Guarino C">C Guarino</name>
</author>
<author><name sortKey="Santoro, S" uniqKey="Santoro S">S Santoro</name>
</author>
<author><name sortKey="De Simone, L" uniqKey="De Simone L">L De Simone</name>
</author>
<author><name sortKey="Cipriani, G" uniqKey="Cipriani G">G Cipriani</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Vaughan, Sp" uniqKey="Vaughan S">SP Vaughan</name>
</author>
<author><name sortKey="Russell, K" uniqKey="Russell K">K Russell</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Clarke, Jb" uniqKey="Clarke J">JB Clarke</name>
</author>
<author><name sortKey="Tobutt, Kr" uniqKey="Tobutt K">KR Tobutt</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Excoffier, L" uniqKey="Excoffier L">L Excoffier</name>
</author>
<author><name sortKey="Lavaland, G" uniqKey="Lavaland G">G Lavaland</name>
</author>
<author><name sortKey="Schneider, S" uniqKey="Schneider S">S Schneider</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rousset, F" uniqKey="Rousset F">F Rousset</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hedrick, Pw" uniqKey="Hedrick P">PW Hedrick</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Barton, Nh" uniqKey="Barton N">NH Barton</name>
</author>
<author><name sortKey="Slatkin, M" uniqKey="Slatkin M">M Slatkin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rousset, F" uniqKey="Rousset F">F Rousset</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Nei, M" uniqKey="Nei M">M Nei</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Derory, J" uniqKey="Derory J">J Derory</name>
</author>
<author><name sortKey="Mariette, S" uniqKey="Mariette S">S Mariette</name>
</author>
<author><name sortKey="Gonzales Martinez, Sc" uniqKey="Gonzales Martinez S">SC Gonzalés-Martínez</name>
</author>
<author><name sortKey="Chagne, D" uniqKey="Chagne D">D Chagné</name>
</author>
<author><name sortKey="Madur, D" uniqKey="Madur D">D Madur</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Heuertz, M" uniqKey="Heuertz M">M Heuertz</name>
</author>
<author><name sortKey="Hausman, Jf" uniqKey="Hausman J">JF Hausman</name>
</author>
<author><name sortKey="Hardy, Oj" uniqKey="Hardy O">OJ Hardy</name>
</author>
<author><name sortKey="Vendramin, Gg" uniqKey="Vendramin G">GG Vendramin</name>
</author>
<author><name sortKey="Frascaria Lacoste, N" uniqKey="Frascaria Lacoste N">N Frascaria-Lacoste</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Westergren, M" uniqKey="Westergren M">M Westergren</name>
</author>
<author><name sortKey="Jarni, K" uniqKey="Jarni K">K Jarni</name>
</author>
<author><name sortKey="Brus, R" uniqKey="Brus R">R Brus</name>
</author>
<author><name sortKey="Kraigher, H" uniqKey="Kraigher H">H Kraigher</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Balloux, F" uniqKey="Balloux F">F Balloux</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hoebee, Se" uniqKey="Hoebee S">SE Hoebee</name>
</author>
<author><name sortKey="Menn, C" uniqKey="Menn C">C Menn</name>
</author>
<author><name sortKey="Rotach, P" uniqKey="Rotach P">P Rotach</name>
</author>
<author><name sortKey="Finkeldey, R" uniqKey="Finkeldey R">R Finkeldey</name>
</author>
<author><name sortKey="Holderegger, R" uniqKey="Holderegger R">R Holderegger</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Santi, F" uniqKey="Santi F">F Santi</name>
</author>
<author><name sortKey="Dufour, J" uniqKey="Dufour J">J Dufour</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Jensen, Js" uniqKey="Jensen J">JS Jensen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Muranty, H" uniqKey="Muranty H">H Muranty</name>
</author>
<author><name sortKey="Schermann, N" uniqKey="Schermann N">N Schermann</name>
</author>
<author><name sortKey="Dufour, J" uniqKey="Dufour J">J Dufour</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Nepveu, G" uniqKey="Nepveu G">G Nepveu</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Nocetti, M" uniqKey="Nocetti M">M Nocetti</name>
</author>
<author><name sortKey="Brunetti, M" uniqKey="Brunetti M">M Brunetti</name>
</author>
<author><name sortKey="Ducci, F" uniqKey="Ducci F">F Ducci</name>
</author>
<author><name sortKey="Romagnoli, M" uniqKey="Romagnoli M">M Romagnoli</name>
</author>
<author><name sortKey="Santi, F" uniqKey="Santi F">F Santi</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<affiliations><list><country><li>Belgique</li>
<li>Slovénie</li>
</country>
</list>
<tree><country name="Slovénie"><noRegion><name sortKey="Jarni, Kristjan" sort="Jarni, Kristjan" uniqKey="Jarni K" first="Kristjan" last="Jarni">Kristjan Jarni</name>
</noRegion>
<name sortKey="Brus, Robert" sort="Brus, Robert" uniqKey="Brus R" first="Robert" last="Brus">Robert Brus</name>
</country>
<country name="Belgique"><noRegion><name sortKey="De Cuyper, Bart" sort="De Cuyper, Bart" uniqKey="De Cuyper B" first="Bart" last="De Cuyper">Bart De Cuyper</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/CheneBelgiqueV2/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000285 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000285 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Bois |area= CheneBelgiqueV2 |flux= Main |étape= Exploration |type= RBID |clé= PMC:3401173 |texte= Genetic Variability of Wild Cherry (Prunus avium L.) Seed Stands in Slovenia as Revealed by Nuclear Microsatellite Loci }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:22911762" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a CheneBelgiqueV2
This area was generated with Dilib version V0.6.27. |