Genetic Variability of Wild Cherry (Prunus avium L.) Seed Stands in Slovenia as Revealed by Nuclear Microsatellite Loci
Identifieur interne : 000202 ( Pmc/Curation ); précédent : 000201; suivant : 000203Genetic Variability of Wild Cherry (Prunus avium L.) Seed Stands in Slovenia as Revealed by Nuclear Microsatellite Loci
Auteurs : Kristjan Jarni [Slovénie] ; Bart De Cuyper [Belgique] ; Robert Brus [Slovénie]Source :
- PLoS ONE [ 1932-6203 ] ; 2012.
Abstract
Microsatellite markers were used to describe the genetic variability of four seed stands of wild cherry (
Url:
DOI: 10.1371/journal.pone.0041231
PubMed: 22911762
PubMed Central: 3401173
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000202
Links to Exploration step
PMC:3401173Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic Variability of Wild Cherry (<italic>Prunus avium</italic> L.) Seed Stands in Slovenia as Revealed by Nuclear Microsatellite Loci</title><author><name sortKey="Jarni, Kristjan" sort="Jarni, Kristjan" uniqKey="Jarni K" first="Kristjan" last="Jarni">Kristjan Jarni</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana</wicri:regionArea></affiliation></author><author><name sortKey="De Cuyper, Bart" sort="De Cuyper, Bart" uniqKey="De Cuyper B" first="Bart" last="De Cuyper">Bart De Cuyper</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Department of Management and Sustainable Use, Research Institute for Nature and Forest, Geraardsbergen, Belgium</addr-line></nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Management and Sustainable Use, Research Institute for Nature and Forest, Geraardsbergen</wicri:regionArea></affiliation></author><author><name sortKey="Brus, Robert" sort="Brus, Robert" uniqKey="Brus R" first="Robert" last="Brus">Robert Brus</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">22911762</idno><idno type="pmc">3401173</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3401173</idno><idno type="RBID">PMC:3401173</idno><idno type="doi">10.1371/journal.pone.0041231</idno><date when="2012">2012</date><idno type="wicri:Area/Pmc/Corpus">000202</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000202</idno><idno type="wicri:Area/Pmc/Curation">000202</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000202</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genetic Variability of Wild Cherry (<italic>Prunus avium</italic> L.) Seed Stands in Slovenia as Revealed by Nuclear Microsatellite Loci</title><author><name sortKey="Jarni, Kristjan" sort="Jarni, Kristjan" uniqKey="Jarni K" first="Kristjan" last="Jarni">Kristjan Jarni</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana</wicri:regionArea></affiliation></author><author><name sortKey="De Cuyper, Bart" sort="De Cuyper, Bart" uniqKey="De Cuyper B" first="Bart" last="De Cuyper">Bart De Cuyper</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Department of Management and Sustainable Use, Research Institute for Nature and Forest, Geraardsbergen, Belgium</addr-line></nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Management and Sustainable Use, Research Institute for Nature and Forest, Geraardsbergen</wicri:regionArea></affiliation></author><author><name sortKey="Brus, Robert" sort="Brus, Robert" uniqKey="Brus R" first="Robert" last="Brus">Robert Brus</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana</wicri:regionArea></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Microsatellite markers were used to describe the genetic variability of four seed stands of wild cherry (<italic>Prunus avium</italic> L.). One hundred and thirty one individuals were genotyped at ten nuclear microsatellite loci. Total genetic diversity was high (<italic>H</italic><sub>E</sub> = 0.704), while differences between stands were small but significant (<italic>F</italic><sub>ST</sub> = 0.053, <italic>G′</italic><sub>ST</sub> = 0.234). There was a significant amount of clonal reproduction in one stand, with only 11 genotypes identified among 36 trees. One stand showed a significant excess (<italic>F</italic><sub>IS</sub> = −0.044) of heterozygosity, and one showed a deficit (<italic>F</italic><sub>IS</sub> = 0.044). Our results demonstrate the importance of taking into account the biological and genetic characteristics of species in forest management, especially when determining a new seed stand. The small genetic differences found between seed stands indicate that a large number of stands are not required. However, they should be carefully selected and should possess adequate genetic variability to ensure low relatedness between seed trees.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Russell, K" uniqKey="Russell K">K Russell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mohanty, A" uniqKey="Mohanty A">A Mohanty</name></author><author><name sortKey="Martin, Jp" uniqKey="Martin J">JP Martín</name></author><author><name sortKey="Aguinagalde, I" uniqKey="Aguinagalde I">I Aguinagalde</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schueler, S" uniqKey="Schueler S">S Schueler</name></author><author><name sortKey="Tusch, A" uniqKey="Tusch A">A Tusch</name></author><author><name sortKey="Scholz, F" uniqKey="Scholz F">F Scholz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Guarino, C" uniqKey="Guarino C">C Guarino</name></author><author><name sortKey="Santoro, S" uniqKey="Santoro S">S Santoro</name></author><author><name sortKey="De Simone, L" uniqKey="De Simone L">L De Simone</name></author><author><name sortKey="Cipriani, G" uniqKey="Cipriani G">G Cipriani</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lacis, G" uniqKey="Lacis G">G Lacis</name></author><author><name sortKey="Rashal, I" uniqKey="Rashal I">I Rashal</name></author><author><name sortKey="Ruisa, S" uniqKey="Ruisa S">S Ruisa</name></author><author><name sortKey="Trajkovski, V" uniqKey="Trajkovski V">V Trajkovski</name></author><author><name sortKey="Iezzoni, Af" uniqKey="Iezzoni A">AF Iezzoni</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kobliha, J" uniqKey="Kobliha J">J Kobliha</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Pravilnik O Dolo Itvi Provenien Nih, Obmo Ij" uniqKey="Pravilnik O Dolo Itvi Provenien Nih O">območij Pravilnik o določitvi provenienčnih</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ducci, F" uniqKey="Ducci F">F Ducci</name></author><author><name sortKey="Santi, F" uniqKey="Santi F">F Santi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vekemans, X" uniqKey="Vekemans X">X Vekemans</name></author><author><name sortKey="Hardy, Oj" uniqKey="Hardy O">OJ Hardy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stoeckel, S" uniqKey="Stoeckel S">S Stoeckel</name></author><author><name sortKey="Grange, J" uniqKey="Grange J">J Grange</name></author><author><name sortKey="Fernandez Manjarres, Jf" uniqKey="Fernandez Manjarres J">JF Fernández-Manjarres</name></author><author><name sortKey="Bilger, I" uniqKey="Bilger I">I Bilger</name></author><author><name sortKey="Frascaria Lacoste, N" uniqKey="Frascaria Lacoste N">N Frascaria-Lacoste</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vaughan, Sp" uniqKey="Vaughan S">SP Vaughan</name></author><author><name sortKey="Cottrell, Je" uniqKey="Cottrell J">JE Cottrell</name></author><author><name sortKey="Moodley, Dj" uniqKey="Moodley D">DJ Moodley</name></author><author><name sortKey="Connolly, T" uniqKey="Connolly T">T Connolly</name></author><author><name sortKey="Russell, K" uniqKey="Russell K">K Russell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Guarino, C" uniqKey="Guarino C">C Guarino</name></author><author><name sortKey="Santoro, S" uniqKey="Santoro S">S Santoro</name></author><author><name sortKey="De Simone, L" uniqKey="De Simone L">L De Simone</name></author><author><name sortKey="Cipriani, G" uniqKey="Cipriani G">G Cipriani</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vaughan, Sp" uniqKey="Vaughan S">SP Vaughan</name></author><author><name sortKey="Russell, K" uniqKey="Russell K">K Russell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Clarke, Jb" uniqKey="Clarke J">JB Clarke</name></author><author><name sortKey="Tobutt, Kr" uniqKey="Tobutt K">KR Tobutt</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Excoffier, L" uniqKey="Excoffier L">L Excoffier</name></author><author><name sortKey="Lavaland, G" uniqKey="Lavaland G">G Lavaland</name></author><author><name sortKey="Schneider, S" uniqKey="Schneider S">S Schneider</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rousset, F" uniqKey="Rousset F">F Rousset</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hedrick, Pw" uniqKey="Hedrick P">PW Hedrick</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Barton, Nh" uniqKey="Barton N">NH Barton</name></author><author><name sortKey="Slatkin, M" uniqKey="Slatkin M">M Slatkin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rousset, F" uniqKey="Rousset F">F Rousset</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nei, M" uniqKey="Nei M">M Nei</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Derory, J" uniqKey="Derory J">J Derory</name></author><author><name sortKey="Mariette, S" uniqKey="Mariette S">S Mariette</name></author><author><name sortKey="Gonzales Martinez, Sc" uniqKey="Gonzales Martinez S">SC Gonzalés-Martínez</name></author><author><name sortKey="Chagne, D" uniqKey="Chagne D">D Chagné</name></author><author><name sortKey="Madur, D" uniqKey="Madur D">D Madur</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Heuertz, M" uniqKey="Heuertz M">M Heuertz</name></author><author><name sortKey="Hausman, Jf" uniqKey="Hausman J">JF Hausman</name></author><author><name sortKey="Hardy, Oj" uniqKey="Hardy O">OJ Hardy</name></author><author><name sortKey="Vendramin, Gg" uniqKey="Vendramin G">GG Vendramin</name></author><author><name sortKey="Frascaria Lacoste, N" uniqKey="Frascaria Lacoste N">N Frascaria-Lacoste</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Westergren, M" uniqKey="Westergren M">M Westergren</name></author><author><name sortKey="Jarni, K" uniqKey="Jarni K">K Jarni</name></author><author><name sortKey="Brus, R" uniqKey="Brus R">R Brus</name></author><author><name sortKey="Kraigher, H" uniqKey="Kraigher H">H Kraigher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Balloux, F" uniqKey="Balloux F">F Balloux</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hoebee, Se" uniqKey="Hoebee S">SE Hoebee</name></author><author><name sortKey="Menn, C" uniqKey="Menn C">C Menn</name></author><author><name sortKey="Rotach, P" uniqKey="Rotach P">P Rotach</name></author><author><name sortKey="Finkeldey, R" uniqKey="Finkeldey R">R Finkeldey</name></author><author><name sortKey="Holderegger, R" uniqKey="Holderegger R">R Holderegger</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Santi, F" uniqKey="Santi F">F Santi</name></author><author><name sortKey="Dufour, J" uniqKey="Dufour J">J Dufour</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jensen, Js" uniqKey="Jensen J">JS Jensen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Muranty, H" uniqKey="Muranty H">H Muranty</name></author><author><name sortKey="Schermann, N" uniqKey="Schermann N">N Schermann</name></author><author><name sortKey="Dufour, J" uniqKey="Dufour J">J Dufour</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nepveu, G" uniqKey="Nepveu G">G Nepveu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nocetti, M" uniqKey="Nocetti M">M Nocetti</name></author><author><name sortKey="Brunetti, M" uniqKey="Brunetti M">M Brunetti</name></author><author><name sortKey="Ducci, F" uniqKey="Ducci F">F Ducci</name></author><author><name sortKey="Romagnoli, M" uniqKey="Romagnoli M">M Romagnoli</name></author><author><name sortKey="Santi, F" uniqKey="Santi F">F Santi</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id><journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group><journal-title>PLoS ONE</journal-title></journal-title-group><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">22911762</article-id><article-id pub-id-type="pmc">3401173</article-id><article-id pub-id-type="publisher-id">PONE-D-12-08358</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0041231</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Agriculture</subject><subj-group><subject>Forestry</subject></subj-group></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biology</subject><subj-group><subject>Genetics</subject><subj-group><subject>Plant Genetics</subject></subj-group></subj-group><subj-group><subject>Plant Science</subject><subj-group><subject>Botany</subject><subj-group><subject>Dendrology</subject></subj-group></subj-group><subj-group><subject>Plant Genetics</subject></subj-group></subj-group><subj-group><subject>Population Biology</subject><subj-group><subject>Population Genetics</subject><subj-group><subject>Gene Flow</subject><subject>Gene Pool</subject><subject>Genetic Polymorphism</subject><subject>Natural Selection</subject></subj-group></subj-group></subj-group></subj-group></article-categories><title-group><article-title>Genetic Variability of Wild Cherry (<italic>Prunus avium</italic> L.) Seed Stands in Slovenia as Revealed by Nuclear Microsatellite Loci</article-title><alt-title alt-title-type="running-head">Genetic Variability of Wild Cherry Seed Stands</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Jarni</surname><given-names>Kristjan</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author"><name><surname>De Cuyper</surname><given-names>Bart</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Brus</surname><given-names>Robert</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib></contrib-group><aff id="aff1"><label>1</label><addr-line>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia</addr-line></aff><aff id="aff2"><label>2</label><addr-line>Department of Management and Sustainable Use, Research Institute for Nature and Forest, Geraardsbergen, Belgium</addr-line></aff><aff id="aff3"><label>3</label><addr-line>Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Niedz</surname><given-names>Randall P.</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1">United States Department of Agriculture, United States of America</aff><author-notes><corresp id="cor1">* E-mail: <email>kristjan.jarni@bf.uni-lj.si</email></corresp><fn fn-type="con"><p>Conceived and designed the experiments: KJ BDC RB. Performed the experiments: KJ. Analyzed the data: KJ BDC RB. Contributed reagents/materials/analysis tools: KJ BDC RB. Wrote the paper: KJ.</p></fn></author-notes><pub-date pub-type="collection"><year>2012</year></pub-date><pub-date pub-type="epub"><day>20</day><month>7</month><year>2012</year></pub-date><volume>7</volume><issue>7</issue><elocation-id>e41231</elocation-id><history><date date-type="received"><day>23</day><month>3</month><year>2012</year></date><date date-type="accepted"><day>19</day><month>6</month><year>2012</year></date></history><permissions><copyright-statement>Jarni et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</copyright-statement><copyright-year>2012</copyright-year></permissions><abstract><p>Microsatellite markers were used to describe the genetic variability of four seed stands of wild cherry (<italic>Prunus avium</italic> L.). One hundred and thirty one individuals were genotyped at ten nuclear microsatellite loci. Total genetic diversity was high (<italic>H</italic><sub>E</sub> = 0.704), while differences between stands were small but significant (<italic>F</italic><sub>ST</sub> = 0.053, <italic>G′</italic><sub>ST</sub> = 0.234). There was a significant amount of clonal reproduction in one stand, with only 11 genotypes identified among 36 trees. One stand showed a significant excess (<italic>F</italic><sub>IS</sub> = −0.044) of heterozygosity, and one showed a deficit (<italic>F</italic><sub>IS</sub> = 0.044). Our results demonstrate the importance of taking into account the biological and genetic characteristics of species in forest management, especially when determining a new seed stand. The small genetic differences found between seed stands indicate that a large number of stands are not required. However, they should be carefully selected and should possess adequate genetic variability to ensure low relatedness between seed trees.</p></abstract><counts><page-count count="5"></page-count></counts></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/CheneBelgiqueV2/Data/Pmc/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000202 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Pmc/Curation/biblio.hfd -nk 000202 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Bois
|area= CheneBelgiqueV2
|flux= Pmc
|étape= Curation
|type= RBID
|clé= PMC:3401173
|texte= Genetic Variability of Wild Cherry (Prunus avium L.) Seed Stands in Slovenia as Revealed by Nuclear Microsatellite Loci
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Pmc/Curation/RBID.i -Sk "pubmed:22911762" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Pmc/Curation/biblio.hfd \
| NlmPubMed2Wicri -a CheneBelgiqueV2
| This area was generated with Dilib version V0.6.27. |  |