New Sicydiinae phylogeny (Teleostei: Gobioidei) inferred from mitochondrial and nuclear genes: insights on systematics and ancestral areas.
Identifieur interne : 003A10 ( PubMed/Corpus ); précédent : 003A09; suivant : 003A11New Sicydiinae phylogeny (Teleostei: Gobioidei) inferred from mitochondrial and nuclear genes: insights on systematics and ancestral areas.
Auteurs : Laura Taillebois ; Magalie Castelin ; Clara Lord ; Ryan Chabarria ; Agnès Dettaï ; Philippe KeithSource :
- Molecular phylogenetics and evolution [ 1095-9513 ] ; 2014.
English descriptors
- KwdEn :
- Animals, Bayes Theorem, Cell Nucleus (metabolism), Cytochromes b (genetics), DNA, Mitochondrial (genetics), DNA, Ribosomal (genetics), Electron Transport Complex IV (genetics), Evolution, Molecular, Female, Mitochondria (metabolism), Perciformes (classification), Perciformes (genetics), Phylogeny, Sequence Analysis, DNA.
- MESH :
- chemical , genetics : Cytochromes b, DNA, Mitochondrial, DNA, Ribosomal, Electron Transport Complex IV.
- classification : Perciformes.
- genetics : Perciformes.
- metabolism : Cell Nucleus, Mitochondria.
- Animals, Bayes Theorem, Evolution, Molecular, Female, Phylogeny, Sequence Analysis, DNA.
Abstract
The Sicydiinae subfamily (Teleostei: Gobioidei) is the biggest contributor to the diversity of fish communities in river systems of tropical islands. These species are found in the Indo-Pacific area, the Caribbean region and West Africa. They spawn in freshwater, their planktotrophic larvae drift downstream to the sea where they develop, before returning to the rivers to grow and reproduce. Hence, they are called amphidromous. Their phylogeny has been explored using a total of 3545 sites from 5 molecular markers (mitochondrial DNA: 16S rDNA, cytochrome oxidase I, cytochrome b; nuclear DNA: rhodopsin gene and a nuclear marker specially developed for this study, the interferon regulatory factor 2 binding protein 1-IRF2PB1). Sequences were obtained for 59 Sicydiinae specimens of 9 known genera. The Bayesian and maximum likelihood analyses support the monophyly of the subfamily as well as the monophylyof all genera except Sicydium, which is paraphyletic. Five major clades were identified within this subfamily. One clade contained the genus Stiphodon. Another clade contained Sicyopterus, Sicydium and Parasicydium with Sicyopterus as sister genus of Sicydium. The non-monophyly of Sicydium subclade, because it includes the monotypic genus Parasicydium, challenged the validity of Parasicydium genus. Ancestral area reconstruction showed that the subfamily emerged in the Central West Pacific region implying that previous hypotheses proposing a dispersal route for Sicydiinae into the Atlantic Ocean are unsupported by the present analysis. Our results suggest that the hypotheses for the dispersal route of the genus Sicydium should be reconsidered.
DOI: 10.1016/j.ympev.2013.09.026
PubMed: 24125831
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pubmed:24125831Le document en format XML
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Electronic address: laura.taillebois@cdu.edu.au.</nlm:affiliation></affiliation></author><author><name sortKey="Castelin, Magalie" sort="Castelin, Magalie" uniqKey="Castelin M" first="Magalie" last="Castelin">Magalie Castelin</name></author><author><name sortKey="Lord, Clara" sort="Lord, Clara" uniqKey="Lord C" first="Clara" last="Lord">Clara Lord</name></author><author><name sortKey="Chabarria, Ryan" sort="Chabarria, Ryan" uniqKey="Chabarria R" first="Ryan" last="Chabarria">Ryan Chabarria</name></author><author><name sortKey="Dettai, Agnes" sort="Dettai, Agnes" uniqKey="Dettai A" first="Agnès" last="Dettaï">Agnès Dettaï</name></author><author><name sortKey="Keith, Philippe" sort="Keith, Philippe" uniqKey="Keith P" first="Philippe" last="Keith">Philippe Keith</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2014">2014</date><idno type="RBID">pubmed:24125831</idno><idno type="pmid">24125831</idno><idno type="doi">10.1016/j.ympev.2013.09.026</idno><idno type="wicri:Area/PubMed/Corpus">003A10</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">003A10</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">New Sicydiinae phylogeny (Teleostei: Gobioidei) inferred from mitochondrial and nuclear genes: insights on systematics and ancestral areas.</title><author><name sortKey="Taillebois, Laura" sort="Taillebois, Laura" uniqKey="Taillebois L" first="Laura" last="Taillebois">Laura Taillebois</name><affiliation><nlm:affiliation>Milieux et Peuplements Aquatiques, Muséum National d'Histoire naturelle - UMR BOREA 7208 (CNRS-IRD-MNHN-UPMC), 57 rue Cuvier CP026, 75231 Paris Cedex 05, France; Research Institute for the Environment and Livelihoods, Charles Darwin University, Darwin 0909, NT, Australia. Electronic address: laura.taillebois@cdu.edu.au.</nlm:affiliation></affiliation></author><author><name sortKey="Castelin, Magalie" sort="Castelin, Magalie" uniqKey="Castelin M" first="Magalie" last="Castelin">Magalie Castelin</name></author><author><name sortKey="Lord, Clara" sort="Lord, Clara" uniqKey="Lord C" first="Clara" last="Lord">Clara Lord</name></author><author><name sortKey="Chabarria, Ryan" sort="Chabarria, Ryan" uniqKey="Chabarria R" first="Ryan" last="Chabarria">Ryan Chabarria</name></author><author><name sortKey="Dettai, Agnes" sort="Dettai, Agnes" uniqKey="Dettai A" first="Agnès" last="Dettaï">Agnès Dettaï</name></author><author><name sortKey="Keith, Philippe" sort="Keith, Philippe" uniqKey="Keith P" first="Philippe" last="Keith">Philippe Keith</name></author></analytic><series><title level="j">Molecular phylogenetics and evolution</title><idno type="eISSN">1095-9513</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Bayes Theorem</term><term>Cell Nucleus (metabolism)</term><term>Cytochromes b (genetics)</term><term>DNA, Mitochondrial (genetics)</term><term>DNA, Ribosomal (genetics)</term><term>Electron Transport Complex IV (genetics)</term><term>Evolution, Molecular</term><term>Female</term><term>Mitochondria (metabolism)</term><term>Perciformes (classification)</term><term>Perciformes (genetics)</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Cytochromes b</term><term>DNA, Mitochondrial</term><term>DNA, Ribosomal</term><term>Electron Transport Complex IV</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Perciformes</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Perciformes</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Cell Nucleus</term><term>Mitochondria</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Bayes Theorem</term><term>Evolution, Molecular</term><term>Female</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The Sicydiinae subfamily (Teleostei: Gobioidei) is the biggest contributor to the diversity of fish communities in river systems of tropical islands. These species are found in the Indo-Pacific area, the Caribbean region and West Africa. They spawn in freshwater, their planktotrophic larvae drift downstream to the sea where they develop, before returning to the rivers to grow and reproduce. Hence, they are called amphidromous. Their phylogeny has been explored using a total of 3545 sites from 5 molecular markers (mitochondrial DNA: 16S rDNA, cytochrome oxidase I, cytochrome b; nuclear DNA: rhodopsin gene and a nuclear marker specially developed for this study, the interferon regulatory factor 2 binding protein 1-IRF2PB1). Sequences were obtained for 59 Sicydiinae specimens of 9 known genera. The Bayesian and maximum likelihood analyses support the monophyly of the subfamily as well as the monophylyof all genera except Sicydium, which is paraphyletic. Five major clades were identified within this subfamily. One clade contained the genus Stiphodon. Another clade contained Sicyopterus, Sicydium and Parasicydium with Sicyopterus as sister genus of Sicydium. The non-monophyly of Sicydium subclade, because it includes the monotypic genus Parasicydium, challenged the validity of Parasicydium genus. Ancestral area reconstruction showed that the subfamily emerged in the Central West Pacific region implying that previous hypotheses proposing a dispersal route for Sicydiinae into the Atlantic Ocean are unsupported by the present analysis. Our results suggest that the hypotheses for the dispersal route of the genus Sicydium should be reconsidered.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24125831</PMID><DateCreated><Year>2013</Year><Month>11</Month><Day>26</Day></DateCreated><DateCompleted><Year>2014</Year><Month>09</Month><Day>08</Day></DateCompleted><DateRevised><Year>2013</Year><Month>11</Month><Day>26</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1095-9513</ISSN><JournalIssue CitedMedium="Internet"><Volume>70</Volume><PubDate><Year>2014</Year><Month>Jan</Month></PubDate></JournalIssue><Title>Molecular phylogenetics and evolution</Title><ISOAbbreviation>Mol. Phylogenet. Evol.</ISOAbbreviation></Journal><ArticleTitle>New Sicydiinae phylogeny (Teleostei: Gobioidei) inferred from mitochondrial and nuclear genes: insights on systematics and ancestral areas.</ArticleTitle><Pagination><MedlinePgn>260-71</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.ympev.2013.09.026</ELocationID><ELocationID EIdType="pii" ValidYN="Y">S1055-7903(13)00384-9</ELocationID><Abstract><AbstractText>The Sicydiinae subfamily (Teleostei: Gobioidei) is the biggest contributor to the diversity of fish communities in river systems of tropical islands. These species are found in the Indo-Pacific area, the Caribbean region and West Africa. They spawn in freshwater, their planktotrophic larvae drift downstream to the sea where they develop, before returning to the rivers to grow and reproduce. Hence, they are called amphidromous. Their phylogeny has been explored using a total of 3545 sites from 5 molecular markers (mitochondrial DNA: 16S rDNA, cytochrome oxidase I, cytochrome b; nuclear DNA: rhodopsin gene and a nuclear marker specially developed for this study, the interferon regulatory factor 2 binding protein 1-IRF2PB1). Sequences were obtained for 59 Sicydiinae specimens of 9 known genera. The Bayesian and maximum likelihood analyses support the monophyly of the subfamily as well as the monophylyof all genera except Sicydium, which is paraphyletic. Five major clades were identified within this subfamily. One clade contained the genus Stiphodon. Another clade contained Sicyopterus, Sicydium and Parasicydium with Sicyopterus as sister genus of Sicydium. The non-monophyly of Sicydium subclade, because it includes the monotypic genus Parasicydium, challenged the validity of Parasicydium genus. Ancestral area reconstruction showed that the subfamily emerged in the Central West Pacific region implying that previous hypotheses proposing a dispersal route for Sicydiinae into the Atlantic Ocean are unsupported by the present analysis. Our results suggest that the hypotheses for the dispersal route of the genus Sicydium should be reconsidered.</AbstractText><CopyrightInformation>Copyright © 2013 Elsevier Inc. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Taillebois</LastName><ForeName>Laura</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Milieux et Peuplements Aquatiques, Muséum National d'Histoire naturelle - UMR BOREA 7208 (CNRS-IRD-MNHN-UPMC), 57 rue Cuvier CP026, 75231 Paris Cedex 05, France; Research Institute for the Environment and Livelihoods, Charles Darwin University, Darwin 0909, NT, Australia. Electronic address: laura.taillebois@cdu.edu.au.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Castelin</LastName><ForeName>Magalie</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Lord</LastName><ForeName>Clara</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Chabarria</LastName><ForeName>Ryan</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Dettaï</LastName><ForeName>Agnès</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Keith</LastName><ForeName>Philippe</ForeName><Initials>P</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>10</Month><Day>11</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Mol Phylogenet Evol</MedlineTA><NlmUniqueID>9304400</NlmUniqueID><ISSNLinking>1055-7903</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004272">DNA, Mitochondrial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>9035-37-4</RegistryNumber><NameOfSubstance UI="D045303">Cytochromes b</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 1.9.3.1</RegistryNumber><NameOfSubstance UI="D003576">Electron Transport Complex IV</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001499" MajorTopicYN="N">Bayes Theorem</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002467" MajorTopicYN="Y">Cell Nucleus</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D045303" MajorTopicYN="N">Cytochromes b</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004272" MajorTopicYN="N">DNA, Mitochondrial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003576" MajorTopicYN="N">Electron Transport Complex IV</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="N">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008928" MajorTopicYN="Y">Mitochondria</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010473" MajorTopicYN="N">Perciformes</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Amphidromy</Keyword><Keyword MajorTopicYN="N">Ancestral areas</Keyword><Keyword MajorTopicYN="N">Dispersal</Keyword><Keyword MajorTopicYN="N">Molecular phylogeny</Keyword><Keyword MajorTopicYN="N">Sicydiinae</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>01</Month><Day>22</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2013</Year><Month>09</Month><Day>20</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2013</Year><Month>09</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>10</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>10</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>9</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24125831</ArticleId><ArticleId IdType="pii">S1055-7903(13)00384-9</ArticleId><ArticleId IdType="doi">10.1016/j.ympev.2013.09.026</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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