Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.
Identifieur interne : 003018 ( PubMed/Corpus ); précédent : 003017; suivant : 003019Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.
Auteurs : Eva-Maria Willing ; Vimal Rawat ; Terezie Mandáková ; Florian Maumus ; Geo Velikkakam James ; Karl J V. Nordström ; Claude Becker ; Norman Warthmann ; Claudia Chica ; Bogna Szarzynska ; Matthias Zytnicki ; Maria C. Albani ; Christiane Kiefer ; Sara Bergonzi ; Loren Castaings ; Julieta L. Mateos ; Markus C. Berns ; Nora Bujdoso ; Thomas Piofczyk ; Laura De Lorenzo ; Cristina Barrero-Sicilia ; Isabel Mateos ; Mathieu Piednoël ; Jörg Hagmann ; Romy Chen-Min-Tao ; Raquel Iglesias-Fernández ; Stephan C. Schuster ; Carlos Alonso-Blanco ; François Roudier ; Pilar Carbonero ; Javier Paz-Ares ; Seth J. Davis ; Ales Pecinka ; Hadi Quesneville ; Vincent Colot ; Martin A. Lysak ; Detlef Weigel ; George Coupland ; Korbinian SchneebergerSource :
- Nature plants [ 2055-0278 ] ; 2015.
Abstract
Despite evolutionary conserved mechanisms to silence transposable element activity, there are drastic differences in the abundance of transposable elements even among closely related plant species. We conducted a de novo assembly for the 375 Mb genome of the perennial model plant, Arabis alpina. Analysing this genome revealed long-lasting and recent transposable element activity predominately driven by Gypsy long terminal repeat retrotransposons, which extended the low-recombining pericentromeres and transformed large formerly euchromatic regions into repeat-rich pericentromeric regions. This reduced capacity for long terminal repeat retrotransposon silencing and removal in A. alpina co-occurs with unexpectedly low levels of DNA methylation. Most remarkably, the striking reduction of symmetrical CG and CHG methylation suggests weakened DNA methylation maintenance in A. alpina compared with Arabidopsis thaliana. Phylogenetic analyses indicate a highly dynamic evolution of some components of methylation maintenance machinery that might be related to the unique methylation in A. alpina.
DOI: 10.1038/nplants.2014.23
PubMed: 27246759
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.</title><author><name sortKey="Willing, Eva Maria" sort="Willing, Eva Maria" uniqKey="Willing E" first="Eva-Maria" last="Willing">Eva-Maria Willing</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Rawat, Vimal" sort="Rawat, Vimal" uniqKey="Rawat V" first="Vimal" last="Rawat">Vimal Rawat</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Mandakova, Terezie" sort="Mandakova, Terezie" uniqKey="Mandakova T" first="Terezie" last="Mandáková">Terezie Mandáková</name><affiliation><nlm:affiliation>Research group Plant Cytogenomics, CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Maumus, Florian" sort="Maumus, Florian" uniqKey="Maumus F" first="Florian" last="Maumus">Florian Maumus</name><affiliation><nlm:affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</nlm:affiliation></affiliation></author><author><name sortKey="James, Geo Velikkakam" sort="James, Geo Velikkakam" uniqKey="James G" first="Geo Velikkakam" last="James">Geo Velikkakam James</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Nordstrom, Karl J V" sort="Nordstrom, Karl J V" uniqKey="Nordstrom K" first="Karl J V" last="Nordström">Karl J V. Nordström</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Becker, Claude" sort="Becker, Claude" uniqKey="Becker C" first="Claude" last="Becker">Claude Becker</name><affiliation><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Warthmann, Norman" sort="Warthmann, Norman" uniqKey="Warthmann N" first="Norman" last="Warthmann">Norman Warthmann</name><affiliation><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Chica, Claudia" sort="Chica, Claudia" uniqKey="Chica C" first="Claudia" last="Chica">Claudia Chica</name><affiliation><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Szarzynska, Bogna" sort="Szarzynska, Bogna" uniqKey="Szarzynska B" first="Bogna" last="Szarzynska">Bogna Szarzynska</name><affiliation><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Zytnicki, Matthias" sort="Zytnicki, Matthias" uniqKey="Zytnicki M" first="Matthias" last="Zytnicki">Matthias Zytnicki</name><affiliation><nlm:affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</nlm:affiliation></affiliation></author><author><name sortKey="Albani, Maria C" sort="Albani, Maria C" uniqKey="Albani M" first="Maria C" last="Albani">Maria C. Albani</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Kiefer, Christiane" sort="Kiefer, Christiane" uniqKey="Kiefer C" first="Christiane" last="Kiefer">Christiane Kiefer</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Bergonzi, Sara" sort="Bergonzi, Sara" uniqKey="Bergonzi S" first="Sara" last="Bergonzi">Sara Bergonzi</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Castaings, Loren" sort="Castaings, Loren" uniqKey="Castaings L" first="Loren" last="Castaings">Loren Castaings</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Mateos, Julieta L" sort="Mateos, Julieta L" uniqKey="Mateos J" first="Julieta L" last="Mateos">Julieta L. Mateos</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Berns, Markus C" sort="Berns, Markus C" uniqKey="Berns M" first="Markus C" last="Berns">Markus C. Berns</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Bujdoso, Nora" sort="Bujdoso, Nora" uniqKey="Bujdoso N" first="Nora" last="Bujdoso">Nora Bujdoso</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Piofczyk, Thomas" sort="Piofczyk, Thomas" uniqKey="Piofczyk T" first="Thomas" last="Piofczyk">Thomas Piofczyk</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="De Lorenzo, Laura" sort="De Lorenzo, Laura" uniqKey="De Lorenzo L" first="Laura" last="De Lorenzo">Laura De Lorenzo</name><affiliation><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Barrero Sicilia, Cristina" sort="Barrero Sicilia, Cristina" uniqKey="Barrero Sicilia C" first="Cristina" last="Barrero-Sicilia">Cristina Barrero-Sicilia</name><affiliation><nlm:affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Mateos, Isabel" sort="Mateos, Isabel" uniqKey="Mateos I" first="Isabel" last="Mateos">Isabel Mateos</name><affiliation><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Piednoel, Mathieu" sort="Piednoel, Mathieu" uniqKey="Piednoel M" first="Mathieu" last="Piednoël">Mathieu Piednoël</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Hagmann, Jorg" sort="Hagmann, Jorg" uniqKey="Hagmann J" first="Jörg" last="Hagmann">Jörg Hagmann</name><affiliation><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Chen Min Tao, Romy" sort="Chen Min Tao, Romy" uniqKey="Chen Min Tao R" first="Romy" last="Chen-Min-Tao">Romy Chen-Min-Tao</name><affiliation><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Iglesias Fernandez, Raquel" sort="Iglesias Fernandez, Raquel" uniqKey="Iglesias Fernandez R" first="Raquel" last="Iglesias-Fernández">Raquel Iglesias-Fernández</name><affiliation><nlm:affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Schuster, Stephan C" sort="Schuster, Stephan C" uniqKey="Schuster S" first="Stephan C" last="Schuster">Stephan C. Schuster</name><affiliation><nlm:affiliation>Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Alonso Blanco, Carlos" sort="Alonso Blanco, Carlos" uniqKey="Alonso Blanco C" first="Carlos" last="Alonso-Blanco">Carlos Alonso-Blanco</name><affiliation><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Roudier, Francois" sort="Roudier, Francois" uniqKey="Roudier F" first="François" last="Roudier">François Roudier</name><affiliation><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Carbonero, Pilar" sort="Carbonero, Pilar" uniqKey="Carbonero P" first="Pilar" last="Carbonero">Pilar Carbonero</name><affiliation><nlm:affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Paz Ares, Javier" sort="Paz Ares, Javier" uniqKey="Paz Ares J" first="Javier" last="Paz-Ares">Javier Paz-Ares</name><affiliation><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Davis, Seth J" sort="Davis, Seth J" uniqKey="Davis S" first="Seth J" last="Davis">Seth J. Davis</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Pecinka, Ales" sort="Pecinka, Ales" uniqKey="Pecinka A" first="Ales" last="Pecinka">Ales Pecinka</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Quesneville, Hadi" sort="Quesneville, Hadi" uniqKey="Quesneville H" first="Hadi" last="Quesneville">Hadi Quesneville</name><affiliation><nlm:affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</nlm:affiliation></affiliation></author><author><name sortKey="Colot, Vincent" sort="Colot, Vincent" uniqKey="Colot V" first="Vincent" last="Colot">Vincent Colot</name><affiliation><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Lysak, Martin A" sort="Lysak, Martin A" uniqKey="Lysak M" first="Martin A" last="Lysak">Martin A. Lysak</name><affiliation><nlm:affiliation>Research group Plant Cytogenomics, CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Weigel, Detlef" sort="Weigel, Detlef" uniqKey="Weigel D" first="Detlef" last="Weigel">Detlef Weigel</name><affiliation><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Coupland, George" sort="Coupland, George" uniqKey="Coupland G" first="George" last="Coupland">George Coupland</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Schneeberger, Korbinian" sort="Schneeberger, Korbinian" uniqKey="Schneeberger K" first="Korbinian" last="Schneeberger">Korbinian Schneeberger</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:27246759</idno><idno type="pmid">27246759</idno><idno type="doi">10.1038/nplants.2014.23</idno><idno type="wicri:Area/PubMed/Corpus">003018</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">003018</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.</title><author><name sortKey="Willing, Eva Maria" sort="Willing, Eva Maria" uniqKey="Willing E" first="Eva-Maria" last="Willing">Eva-Maria Willing</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Rawat, Vimal" sort="Rawat, Vimal" uniqKey="Rawat V" first="Vimal" last="Rawat">Vimal Rawat</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Mandakova, Terezie" sort="Mandakova, Terezie" uniqKey="Mandakova T" first="Terezie" last="Mandáková">Terezie Mandáková</name><affiliation><nlm:affiliation>Research group Plant Cytogenomics, CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Maumus, Florian" sort="Maumus, Florian" uniqKey="Maumus F" first="Florian" last="Maumus">Florian Maumus</name><affiliation><nlm:affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</nlm:affiliation></affiliation></author><author><name sortKey="James, Geo Velikkakam" sort="James, Geo Velikkakam" uniqKey="James G" first="Geo Velikkakam" last="James">Geo Velikkakam James</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Nordstrom, Karl J V" sort="Nordstrom, Karl J V" uniqKey="Nordstrom K" first="Karl J V" last="Nordström">Karl J V. Nordström</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Becker, Claude" sort="Becker, Claude" uniqKey="Becker C" first="Claude" last="Becker">Claude Becker</name><affiliation><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Warthmann, Norman" sort="Warthmann, Norman" uniqKey="Warthmann N" first="Norman" last="Warthmann">Norman Warthmann</name><affiliation><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Chica, Claudia" sort="Chica, Claudia" uniqKey="Chica C" first="Claudia" last="Chica">Claudia Chica</name><affiliation><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Szarzynska, Bogna" sort="Szarzynska, Bogna" uniqKey="Szarzynska B" first="Bogna" last="Szarzynska">Bogna Szarzynska</name><affiliation><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Zytnicki, Matthias" sort="Zytnicki, Matthias" uniqKey="Zytnicki M" first="Matthias" last="Zytnicki">Matthias Zytnicki</name><affiliation><nlm:affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</nlm:affiliation></affiliation></author><author><name sortKey="Albani, Maria C" sort="Albani, Maria C" uniqKey="Albani M" first="Maria C" last="Albani">Maria C. Albani</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Kiefer, Christiane" sort="Kiefer, Christiane" uniqKey="Kiefer C" first="Christiane" last="Kiefer">Christiane Kiefer</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Bergonzi, Sara" sort="Bergonzi, Sara" uniqKey="Bergonzi S" first="Sara" last="Bergonzi">Sara Bergonzi</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Castaings, Loren" sort="Castaings, Loren" uniqKey="Castaings L" first="Loren" last="Castaings">Loren Castaings</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Mateos, Julieta L" sort="Mateos, Julieta L" uniqKey="Mateos J" first="Julieta L" last="Mateos">Julieta L. Mateos</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Berns, Markus C" sort="Berns, Markus C" uniqKey="Berns M" first="Markus C" last="Berns">Markus C. Berns</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Bujdoso, Nora" sort="Bujdoso, Nora" uniqKey="Bujdoso N" first="Nora" last="Bujdoso">Nora Bujdoso</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Piofczyk, Thomas" sort="Piofczyk, Thomas" uniqKey="Piofczyk T" first="Thomas" last="Piofczyk">Thomas Piofczyk</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="De Lorenzo, Laura" sort="De Lorenzo, Laura" uniqKey="De Lorenzo L" first="Laura" last="De Lorenzo">Laura De Lorenzo</name><affiliation><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Barrero Sicilia, Cristina" sort="Barrero Sicilia, Cristina" uniqKey="Barrero Sicilia C" first="Cristina" last="Barrero-Sicilia">Cristina Barrero-Sicilia</name><affiliation><nlm:affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Mateos, Isabel" sort="Mateos, Isabel" uniqKey="Mateos I" first="Isabel" last="Mateos">Isabel Mateos</name><affiliation><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Piednoel, Mathieu" sort="Piednoel, Mathieu" uniqKey="Piednoel M" first="Mathieu" last="Piednoël">Mathieu Piednoël</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Hagmann, Jorg" sort="Hagmann, Jorg" uniqKey="Hagmann J" first="Jörg" last="Hagmann">Jörg Hagmann</name><affiliation><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Chen Min Tao, Romy" sort="Chen Min Tao, Romy" uniqKey="Chen Min Tao R" first="Romy" last="Chen-Min-Tao">Romy Chen-Min-Tao</name><affiliation><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Iglesias Fernandez, Raquel" sort="Iglesias Fernandez, Raquel" uniqKey="Iglesias Fernandez R" first="Raquel" last="Iglesias-Fernández">Raquel Iglesias-Fernández</name><affiliation><nlm:affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Schuster, Stephan C" sort="Schuster, Stephan C" uniqKey="Schuster S" first="Stephan C" last="Schuster">Stephan C. Schuster</name><affiliation><nlm:affiliation>Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Alonso Blanco, Carlos" sort="Alonso Blanco, Carlos" uniqKey="Alonso Blanco C" first="Carlos" last="Alonso-Blanco">Carlos Alonso-Blanco</name><affiliation><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Roudier, Francois" sort="Roudier, Francois" uniqKey="Roudier F" first="François" last="Roudier">François Roudier</name><affiliation><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Carbonero, Pilar" sort="Carbonero, Pilar" uniqKey="Carbonero P" first="Pilar" last="Carbonero">Pilar Carbonero</name><affiliation><nlm:affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Paz Ares, Javier" sort="Paz Ares, Javier" uniqKey="Paz Ares J" first="Javier" last="Paz-Ares">Javier Paz-Ares</name><affiliation><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Davis, Seth J" sort="Davis, Seth J" uniqKey="Davis S" first="Seth J" last="Davis">Seth J. Davis</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Pecinka, Ales" sort="Pecinka, Ales" uniqKey="Pecinka A" first="Ales" last="Pecinka">Ales Pecinka</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Quesneville, Hadi" sort="Quesneville, Hadi" uniqKey="Quesneville H" first="Hadi" last="Quesneville">Hadi Quesneville</name><affiliation><nlm:affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</nlm:affiliation></affiliation></author><author><name sortKey="Colot, Vincent" sort="Colot, Vincent" uniqKey="Colot V" first="Vincent" last="Colot">Vincent Colot</name><affiliation><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Lysak, Martin A" sort="Lysak, Martin A" uniqKey="Lysak M" first="Martin A" last="Lysak">Martin A. Lysak</name><affiliation><nlm:affiliation>Research group Plant Cytogenomics, CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Weigel, Detlef" sort="Weigel, Detlef" uniqKey="Weigel D" first="Detlef" last="Weigel">Detlef Weigel</name><affiliation><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Coupland, George" sort="Coupland, George" uniqKey="Coupland G" first="George" last="Coupland">George Coupland</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Schneeberger, Korbinian" sort="Schneeberger, Korbinian" uniqKey="Schneeberger K" first="Korbinian" last="Schneeberger">Korbinian Schneeberger</name><affiliation><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Nature plants</title><idno type="eISSN">2055-0278</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Despite evolutionary conserved mechanisms to silence transposable element activity, there are drastic differences in the abundance of transposable elements even among closely related plant species. We conducted a de novo assembly for the 375 Mb genome of the perennial model plant, Arabis alpina. Analysing this genome revealed long-lasting and recent transposable element activity predominately driven by Gypsy long terminal repeat retrotransposons, which extended the low-recombining pericentromeres and transformed large formerly euchromatic regions into repeat-rich pericentromeric regions. This reduced capacity for long terminal repeat retrotransposon silencing and removal in A. alpina co-occurs with unexpectedly low levels of DNA methylation. Most remarkably, the striking reduction of symmetrical CG and CHG methylation suggests weakened DNA methylation maintenance in A. alpina compared with Arabidopsis thaliana. Phylogenetic analyses indicate a highly dynamic evolution of some components of methylation maintenance machinery that might be related to the unique methylation in A. alpina.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">27246759</PMID><DateCreated><Year>2016</Year><Month>06</Month><Day>01</Day></DateCreated><DateCompleted><Year>2016</Year><Month>06</Month><Day>03</Day></DateCompleted><DateRevised><Year>2016</Year><Month>06</Month><Day>01</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2055-0278</ISSN><JournalIssue CitedMedium="Internet"><Volume>1</Volume><PubDate><Year>2015</Year><Month>Feb</Month><Day>02</Day></PubDate></JournalIssue><Title>Nature plants</Title><ISOAbbreviation>Nat Plants</ISOAbbreviation></Journal><ArticleTitle>Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.</ArticleTitle><Pagination><MedlinePgn>14023</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/nplants.2014.23</ELocationID><Abstract><AbstractText>Despite evolutionary conserved mechanisms to silence transposable element activity, there are drastic differences in the abundance of transposable elements even among closely related plant species. We conducted a de novo assembly for the 375 Mb genome of the perennial model plant, Arabis alpina. Analysing this genome revealed long-lasting and recent transposable element activity predominately driven by Gypsy long terminal repeat retrotransposons, which extended the low-recombining pericentromeres and transformed large formerly euchromatic regions into repeat-rich pericentromeric regions. This reduced capacity for long terminal repeat retrotransposon silencing and removal in A. alpina co-occurs with unexpectedly low levels of DNA methylation. Most remarkably, the striking reduction of symmetrical CG and CHG methylation suggests weakened DNA methylation maintenance in A. alpina compared with Arabidopsis thaliana. Phylogenetic analyses indicate a highly dynamic evolution of some components of methylation maintenance machinery that might be related to the unique methylation in A. alpina.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Willing</LastName><ForeName>Eva-Maria</ForeName><Initials>EM</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rawat</LastName><ForeName>Vimal</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mandáková</LastName><ForeName>Terezie</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Research group Plant Cytogenomics, CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Maumus</LastName><ForeName>Florian</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>James</LastName><ForeName>Geo Velikkakam</ForeName><Initials>GV</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nordström</LastName><ForeName>Karl J V</ForeName><Initials>KJ</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Becker</LastName><ForeName>Claude</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Warthmann</LastName><ForeName>Norman</ForeName><Initials>N</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-1178-8409</Identifier><AffiliationInfo><Affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chica</LastName><ForeName>Claudia</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Szarzynska</LastName><ForeName>Bogna</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zytnicki</LastName><ForeName>Matthias</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Albani</LastName><ForeName>Maria C</ForeName><Initials>MC</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kiefer</LastName><ForeName>Christiane</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bergonzi</LastName><ForeName>Sara</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Castaings</LastName><ForeName>Loren</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mateos</LastName><ForeName>Julieta L</ForeName><Initials>JL</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Berns</LastName><ForeName>Markus C</ForeName><Initials>MC</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bujdoso</LastName><ForeName>Nora</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Piofczyk</LastName><ForeName>Thomas</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>de Lorenzo</LastName><ForeName>Laura</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Barrero-Sicilia</LastName><ForeName>Cristina</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mateos</LastName><ForeName>Isabel</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Piednoël</LastName><ForeName>Mathieu</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hagmann</LastName><ForeName>Jörg</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen-Min-Tao</LastName><ForeName>Romy</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Iglesias-Fernández</LastName><ForeName>Raquel</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schuster</LastName><ForeName>Stephan C</ForeName><Initials>SC</Initials><AffiliationInfo><Affiliation>Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Alonso-Blanco</LastName><ForeName>Carlos</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Roudier</LastName><ForeName>François</ForeName><Initials>F</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-1757-6386</Identifier><AffiliationInfo><Affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Carbonero</LastName><ForeName>Pilar</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Paz-Ares</LastName><ForeName>Javier</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Davis</LastName><ForeName>Seth J</ForeName><Initials>SJ</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pecinka</LastName><ForeName>Ales</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Quesneville</LastName><ForeName>Hadi</ForeName><Initials>H</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-3001-4908</Identifier><AffiliationInfo><Affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Colot</LastName><ForeName>Vincent</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lysak</LastName><ForeName>Martin A</ForeName><Initials>MA</Initials><AffiliationInfo><Affiliation>Research group Plant Cytogenomics, CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Weigel</LastName><ForeName>Detlef</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Coupland</LastName><ForeName>George</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schneeberger</LastName><ForeName>Korbinian</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>02</Month><Day>02</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Nat Plants</MedlineTA><NlmUniqueID>101651677</NlmUniqueID><ISSNLinking>2055-0278</ISSNLinking></MedlineJournalInfo></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>09</Month><Day>16</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>12</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>6</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>1</Month><Day>1</Day><Hour>0</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>1</Month><Day>1</Day><Hour>0</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">27246759</ArticleId><ArticleId IdType="pii">nplants201423</ArticleId><ArticleId IdType="doi">10.1038/nplants.2014.23</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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