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Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration.

Identifieur interne : 000765 ( PubMed/Checkpoint ); précédent : 000764; suivant : 000766

Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration.

Auteurs : Soo-Yon Rhee [États-Unis] ; Vici Varghese [États-Unis] ; Susan P. Holmes [États-Unis] ; Gert U. Van Zyl [Afrique du Sud] ; Kim Steegen [Afrique du Sud] ; Mark A. Boyd [Australie] ; David A. Cooper [Australie] ; Sabin Nsanzimana [Rwanda] ; Shanmugam Saravanan [Inde] ; Charlotte Charpentier [France] ; Tulio De Oliveira [Afrique du Sud] ; Mary-Ann A. Etiebet [États-Unis] ; Federico Garcia [Espagne] ; Dominique Goedhals [Afrique du Sud] ; Perpetua Gomes [Portugal] ; Huldrych F. Günthard [Suisse] ; Raph L. Hamers [Pays-Bas] ; Christopher J. Hoffmann [États-Unis] ; Gillian Hunt [Afrique du Sud] ; Awachana Jiamsakul [Australie] ; Pontiano Kaleebu [Ouganda] ; Phyllis Kanki [États-Unis] ; Rami Kantor [États-Unis] ; Bernhard Kerschberger [Swaziland] ; Vincent C. Marconi [États-Unis] ; Jean D'Amour Ndahimana [Rwanda] ; Nicaise Ndembi [Nigeria] ; Nicole Ngo-Giang-Huong [France] ; Casper Rokx [Pays-Bas] ; Maria M. Santoro [Italie] ; Jonathan M. Schapiro [Israël] ; Daniel Schmidt [Allemagne] ; Lillian Seu [États-Unis] ; Kim C E. Sigaloff [Pays-Bas] ; Sunee Sirivichayakul [Thaïlande] ; Lindiwe Skhosana [Afrique du Sud] ; Henry Sunpath [Afrique du Sud] ; Michele Tang [États-Unis] ; Chunfu Yang [Haïti] ; Sergio Carmona [Afrique du Sud] ; Ravindra K. Gupta [Royaume-Uni] ; Robert W. Shafer [États-Unis]

Source :

RBID : pubmed:28365230

Abstract

Tenofovir disoproxil fumarate (TDF) genotypic resistance defined by K65R/N and/or K70E/Q/G occurs in 20% to 60% of individuals with virological failure (VF) on a WHO-recommended TDF-containing first-line regimen. However, the full spectrum of reverse transcriptase (RT) mutations selected in individuals with VF on such a regimen is not known. To identify TDF regimen-associated mutations (TRAMs), we compared the proportion of each RT mutation in 2873 individuals with VF on a WHO-recommended first-line TDF-containing regimen to its proportion in a cohort of 50,803 antiretroviral-naïve individuals. To identify TRAMs specifically associated with TDF-selection pressure, we compared the proportion of each TRAM to its proportion in a cohort of 5805 individuals with VF on a first-line thymidine analog-containing regimen. We identified 83 TRAMs including 33 NRTI-associated, 40 NNRTI-associated, and 10 uncommon mutations of uncertain provenance. Of the 33 NRTI-associated TRAMs, 12 - A62V, K65R/N, S68G/N/D, K70E/Q/T, L74I, V75L, and Y115F - were more common among individuals receiving a first-line TDF-containing compared to a first-line thymidine analog-containing regimen. These 12 TDF-selected TRAMs will be important for monitoring TDF-associated transmitted drug-resistance and for determining the extent of reduced TDF susceptibility in individuals with VF on a TDF-containing regimen.

DOI: 10.1016/j.ebiom.2017.03.024
PubMed: 28365230


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Le document en format XML

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<nlm:affiliation>Uganda Virus Research Institute, Entebbe, P.O. Box 49, Uganda.</nlm:affiliation>
<country xml:lang="fr">Ouganda</country>
<wicri:regionArea>Uganda Virus Research Institute, Entebbe, P.O. Box 49</wicri:regionArea>
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<name sortKey="Kanki, Phyllis" sort="Kanki, Phyllis" uniqKey="Kanki P" first="Phyllis" last="Kanki">Phyllis Kanki</name>
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<nlm:affiliation>Harvard T. H. Chan School of Public Health, Boston, MA 02115, USA.</nlm:affiliation>
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<name sortKey="Kantor, Rami" sort="Kantor, Rami" uniqKey="Kantor R" first="Rami" last="Kantor">Rami Kantor</name>
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<nlm:affiliation>Division of Infectious Diseases, Alpert Medical School, Brown University, Providence, RI 02903, USA.</nlm:affiliation>
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<name sortKey="Kerschberger, Bernhard" sort="Kerschberger, Bernhard" uniqKey="Kerschberger B" first="Bernhard" last="Kerschberger">Bernhard Kerschberger</name>
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<nlm:affiliation>Médecins sans Frontières, Mbabane, H100, Swaziland.</nlm:affiliation>
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<name sortKey="Marconi, Vincent C" sort="Marconi, Vincent C" uniqKey="Marconi V" first="Vincent C" last="Marconi">Vincent C. Marconi</name>
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<nlm:affiliation>Emory University School of Medicine, Rollins School of Public Health, Emory University, Atlanta, GA 30322, USA.</nlm:affiliation>
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<name sortKey="D Amour Ndahimana, Jean" sort="D Amour Ndahimana, Jean" uniqKey="D Amour Ndahimana J" first="Jean" last="D'Amour Ndahimana">Jean D'Amour Ndahimana</name>
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<nlm:affiliation>HIV/AIDS Division, Rwanda Biomedical Center, Kigali, P.O. Box 87, Rwanda.</nlm:affiliation>
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<wicri:regionArea>HIV/AIDS Division, Rwanda Biomedical Center, Kigali, P.O. Box 87</wicri:regionArea>
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<name sortKey="Ndembi, Nicaise" sort="Ndembi, Nicaise" uniqKey="Ndembi N" first="Nicaise" last="Ndembi">Nicaise Ndembi</name>
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<nlm:affiliation>Institute of Human Virology Nigeria, Abuja, Federal Capital Territory, P.O. Box 9396, Nigeria.</nlm:affiliation>
<country xml:lang="fr">Nigeria</country>
<wicri:regionArea>Institute of Human Virology Nigeria, Abuja, Federal Capital Territory, P.O. Box 9396</wicri:regionArea>
<wicri:noRegion>P.O. Box 9396</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Ngo Giang Huong, Nicole" sort="Ngo Giang Huong, Nicole" uniqKey="Ngo Giang Huong N" first="Nicole" last="Ngo-Giang-Huong">Nicole Ngo-Giang-Huong</name>
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<nlm:affiliation>Institut de Recherche pour le Developpement (IRD), UMI 174 - PHPT, 13572 Marseilles, France.</nlm:affiliation>
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<name sortKey="Rokx, Casper" sort="Rokx, Casper" uniqKey="Rokx C" first="Casper" last="Rokx">Casper Rokx</name>
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<nlm:affiliation>Department of Internal Medicine and Infectious Diseases, Erasmus University Medical Center, 3000 CA Rotterdam, The Netherlands.</nlm:affiliation>
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<wicri:regionArea>Department of Internal Medicine and Infectious Diseases, Erasmus University Medical Center, 3000 CA Rotterdam</wicri:regionArea>
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<name sortKey="Santoro, Maria M" sort="Santoro, Maria M" uniqKey="Santoro M" first="Maria M" last="Santoro">Maria M. Santoro</name>
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<nlm:affiliation>University of Rome Tor Vergata, 00173 Rome, Italy.</nlm:affiliation>
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<name sortKey="Schapiro, Jonathan M" sort="Schapiro, Jonathan M" uniqKey="Schapiro J" first="Jonathan M" last="Schapiro">Jonathan M. Schapiro</name>
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<nlm:affiliation>National Hemophilia Center, Sheba Medical Center, Tel Aviv 5262000, Israel.</nlm:affiliation>
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<name sortKey="Schmidt, Daniel" sort="Schmidt, Daniel" uniqKey="Schmidt D" first="Daniel" last="Schmidt">Daniel Schmidt</name>
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<nlm:affiliation>Department of Infectious Disease Epidemiology, HIV/AIDS, STI and Blood Born Infections, Robert Koch-Institute, 13353 Berlin, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Department of Infectious Disease Epidemiology, HIV/AIDS, STI and Blood Born Infections, Robert Koch-Institute, 13353 Berlin</wicri:regionArea>
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<name sortKey="Seu, Lillian" sort="Seu, Lillian" uniqKey="Seu L" first="Lillian" last="Seu">Lillian Seu</name>
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<nlm:affiliation>School of Medicine, University of Alabama at Birmingham, AL 35210, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>School of Medicine, University of Alabama at Birmingham, AL 35210</wicri:regionArea>
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<region type="state">Alabama</region>
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<name sortKey="Sigaloff, Kim C E" sort="Sigaloff, Kim C E" uniqKey="Sigaloff K" first="Kim C E" last="Sigaloff">Kim C E. Sigaloff</name>
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<nlm:affiliation>Amsterdam Institute for Global Health and Development, Department of Global Health, Academic Medical Center, University of Amsterdam, Amsterdam, P.O. Box 22700, The Netherlands.</nlm:affiliation>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Amsterdam Institute for Global Health and Development, Department of Global Health, Academic Medical Center, University of Amsterdam, Amsterdam, P.O. Box 22700</wicri:regionArea>
<orgName type="university">Université d'Amsterdam</orgName>
<placeName>
<settlement type="city">Amsterdam</settlement>
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<name sortKey="Sirivichayakul, Sunee" sort="Sirivichayakul, Sunee" uniqKey="Sirivichayakul S" first="Sunee" last="Sirivichayakul">Sunee Sirivichayakul</name>
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<nlm:affiliation>Faculty of Medicine, Chulalongkorn University, Bangkok 10330, Thailand.</nlm:affiliation>
<country xml:lang="fr">Thaïlande</country>
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<nlm:affiliation>Department of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Department of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050</wicri:regionArea>
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<settlement type="city">Johannesbourg</settlement>
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<name sortKey="Sunpath, Henry" sort="Sunpath, Henry" uniqKey="Sunpath H" first="Henry" last="Sunpath">Henry Sunpath</name>
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<nlm:affiliation>School of Clinical Sciences, University of KwaZulu- Natal, Durban 4041, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>School of Clinical Sciences, University of KwaZulu- Natal, Durban 4041</wicri:regionArea>
<wicri:noRegion>Durban 4041</wicri:noRegion>
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<author>
<name sortKey="Tang, Michele" sort="Tang, Michele" uniqKey="Tang M" first="Michele" last="Tang">Michele Tang</name>
<affiliation wicri:level="2">
<nlm:affiliation>Department of Medicine, Stanford University, Stanford, CA 94305, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Medicine, Stanford University, Stanford, CA 94305</wicri:regionArea>
<placeName>
<region type="state">Californie</region>
</placeName>
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<author>
<name sortKey="Yang, Chunfu" sort="Yang, Chunfu" uniqKey="Yang C" first="Chunfu" last="Yang">Chunfu Yang</name>
<affiliation wicri:level="1">
<nlm:affiliation>Division of Global HIV/AIDS, Center for Global Health, Centers for Disease Control and Prevention, Port-au-Prince, Haiti.</nlm:affiliation>
<country xml:lang="fr">Haïti</country>
<wicri:regionArea>Division of Global HIV/AIDS, Center for Global Health, Centers for Disease Control and Prevention, Port-au-Prince</wicri:regionArea>
<wicri:noRegion>Port-au-Prince</wicri:noRegion>
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<name sortKey="Carmona, Sergio" sort="Carmona, Sergio" uniqKey="Carmona S" first="Sergio" last="Carmona">Sergio Carmona</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Department of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050</wicri:regionArea>
<orgName type="university">Université du Witwatersrand</orgName>
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<settlement type="city">Johannesbourg</settlement>
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<nlm:affiliation>UCL, Department of Infection, London WC1E 6BT, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>UCL, Department of Infection, London WC1E 6BT</wicri:regionArea>
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<affiliation wicri:level="2">
<nlm:affiliation>Department of Medicine, Stanford University, Stanford, CA 94305, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Medicine, Stanford University, Stanford, CA 94305</wicri:regionArea>
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<title xml:lang="en">Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration.</title>
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<name sortKey="Rhee, Soo Yon" sort="Rhee, Soo Yon" uniqKey="Rhee S" first="Soo-Yon" last="Rhee">Soo-Yon Rhee</name>
<affiliation wicri:level="2">
<nlm:affiliation>Department of Medicine, Stanford University, Stanford, CA 94305, USA. Electronic address: syrhee@stanford.edu.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Medicine, Stanford University, Stanford, CA 94305</wicri:regionArea>
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<region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Varghese, Vici" sort="Varghese, Vici" uniqKey="Varghese V" first="Vici" last="Varghese">Vici Varghese</name>
<affiliation wicri:level="2">
<nlm:affiliation>Department of Medicine, Stanford University, Stanford, CA 94305, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Medicine, Stanford University, Stanford, CA 94305</wicri:regionArea>
<placeName>
<region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Holmes, Susan P" sort="Holmes, Susan P" uniqKey="Holmes S" first="Susan P" last="Holmes">Susan P. Holmes</name>
<affiliation wicri:level="2">
<nlm:affiliation>Department of Statistics, Stanford University, Stanford, CA 94305, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Statistics, Stanford University, Stanford, CA 94305</wicri:regionArea>
<placeName>
<region type="state">Californie</region>
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</affiliation>
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<author>
<name sortKey="Van Zyl, Gert U" sort="Van Zyl, Gert U" uniqKey="Van Zyl G" first="Gert U" last="Van Zyl">Gert U. Van Zyl</name>
<affiliation wicri:level="1">
<nlm:affiliation>Division of Medical Virology, Stellenbosch University, National Health Laboratory Service, Tygerberg 7505, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Division of Medical Virology, Stellenbosch University, National Health Laboratory Service, Tygerberg 7505</wicri:regionArea>
<wicri:noRegion>Tygerberg 7505</wicri:noRegion>
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</author>
<author>
<name sortKey="Steegen, Kim" sort="Steegen, Kim" uniqKey="Steegen K" first="Kim" last="Steegen">Kim Steegen</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Department of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050</wicri:regionArea>
<orgName type="university">Université du Witwatersrand</orgName>
<placeName>
<settlement type="city">Johannesbourg</settlement>
<region type="region" nuts="2">Gauteng</region>
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</affiliation>
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<author>
<name sortKey="Boyd, Mark A" sort="Boyd, Mark A" uniqKey="Boyd M" first="Mark A" last="Boyd">Mark A. Boyd</name>
<affiliation wicri:level="1">
<nlm:affiliation>The Kirby Institute, UNSW, Sydney, NSW 2052, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>The Kirby Institute, UNSW, Sydney, NSW 2052</wicri:regionArea>
<wicri:noRegion>NSW 2052</wicri:noRegion>
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<author>
<name sortKey="Cooper, David A" sort="Cooper, David A" uniqKey="Cooper D" first="David A" last="Cooper">David A. Cooper</name>
<affiliation wicri:level="1">
<nlm:affiliation>The Kirby Institute, UNSW, Sydney, NSW 2052, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>The Kirby Institute, UNSW, Sydney, NSW 2052</wicri:regionArea>
<wicri:noRegion>NSW 2052</wicri:noRegion>
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</author>
<author>
<name sortKey="Nsanzimana, Sabin" sort="Nsanzimana, Sabin" uniqKey="Nsanzimana S" first="Sabin" last="Nsanzimana">Sabin Nsanzimana</name>
<affiliation wicri:level="1">
<nlm:affiliation>HIV/AIDS Division, Rwanda Biomedical Center, Kigali, P.O. Box 87, Rwanda.</nlm:affiliation>
<country xml:lang="fr">Rwanda</country>
<wicri:regionArea>HIV/AIDS Division, Rwanda Biomedical Center, Kigali, P.O. Box 87</wicri:regionArea>
<wicri:noRegion>P.O. Box 87</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Saravanan, Shanmugam" sort="Saravanan, Shanmugam" uniqKey="Saravanan S" first="Shanmugam" last="Saravanan">Shanmugam Saravanan</name>
<affiliation wicri:level="1">
<nlm:affiliation>Y.R. Gaitonde Centre for AIDS Research and Education, Voluntary Health Services, Taramani, Chennai 600113, India.</nlm:affiliation>
<country xml:lang="fr">Inde</country>
<wicri:regionArea>Y.R. Gaitonde Centre for AIDS Research and Education, Voluntary Health Services, Taramani, Chennai 600113</wicri:regionArea>
<wicri:noRegion>Chennai 600113</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Charpentier, Charlotte" sort="Charpentier, Charlotte" uniqKey="Charpentier C" first="Charlotte" last="Charpentier">Charlotte Charpentier</name>
<affiliation wicri:level="1">
<nlm:affiliation>Univ Paris Diderot, Sorbonne Paris Cité, IAME, UMR 1137, INSERM, F-75018 Paris, France; AP-HP, Hôpital Bichat-Claude Bernard, Laboratoire de Virologie, F-75018 Paris, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Univ Paris Diderot, Sorbonne Paris Cité, IAME, UMR 1137, INSERM, F-75018 Paris, France; AP-HP, Hôpital Bichat-Claude Bernard, Laboratoire de Virologie, F-75018 Paris</wicri:regionArea>
<wicri:noRegion>75018 Paris</wicri:noRegion>
<wicri:noRegion>75018 Paris</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="De Oliveira, Tulio" sort="De Oliveira, Tulio" uniqKey="De Oliveira T" first="Tulio" last="De Oliveira">Tulio De Oliveira</name>
<affiliation wicri:level="1">
<nlm:affiliation>College of Health Sciences, University of KwaZulu-Natal, Durban 4041, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>College of Health Sciences, University of KwaZulu-Natal, Durban 4041</wicri:regionArea>
<wicri:noRegion>Durban 4041</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Etiebet, Mary Ann A" sort="Etiebet, Mary Ann A" uniqKey="Etiebet M" first="Mary-Ann A" last="Etiebet">Mary-Ann A. Etiebet</name>
<affiliation wicri:level="2">
<nlm:affiliation>Institute of Human Virology, University of Maryland School of Medicine, MD 21201, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Institute of Human Virology, University of Maryland School of Medicine, MD 21201</wicri:regionArea>
<placeName>
<region type="state">Maryland</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Garcia, Federico" sort="Garcia, Federico" uniqKey="Garcia F" first="Federico" last="Garcia">Federico Garcia</name>
<affiliation wicri:level="1">
<nlm:affiliation>Hospital Universitario San Cecilio, 18012 Granada, Spain.</nlm:affiliation>
<country xml:lang="fr">Espagne</country>
<wicri:regionArea>Hospital Universitario San Cecilio, 18012 Granada</wicri:regionArea>
<wicri:noRegion>18012 Granada</wicri:noRegion>
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</author>
<author>
<name sortKey="Goedhals, Dominique" sort="Goedhals, Dominique" uniqKey="Goedhals D" first="Dominique" last="Goedhals">Dominique Goedhals</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Medical Microbiology and Virology, National Health Laboratory Service/University of the Free State, Bloemfontein 9301,South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Department of Medical Microbiology and Virology, National Health Laboratory Service/University of the Free State, Bloemfontein 9301</wicri:regionArea>
<wicri:noRegion>Bloemfontein 9301</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Gomes, Perpetua" sort="Gomes, Perpetua" uniqKey="Gomes P" first="Perpetua" last="Gomes">Perpetua Gomes</name>
<affiliation wicri:level="1">
<nlm:affiliation>Laboratorio de Virologia, Hospital de Egas Moniz, Centro Hospitalar de Lisboa Ocidental, Lisbon 1449-005, Portugal.</nlm:affiliation>
<country xml:lang="fr">Portugal</country>
<wicri:regionArea>Laboratorio de Virologia, Hospital de Egas Moniz, Centro Hospitalar de Lisboa Ocidental, Lisbon 1449-005</wicri:regionArea>
<wicri:noRegion>Lisbon 1449-005</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Gunthard, Huldrych F" sort="Gunthard, Huldrych F" uniqKey="Gunthard H" first="Huldrych F" last="Günthard">Huldrych F. Günthard</name>
<affiliation wicri:level="1">
<nlm:affiliation>University Hospital Zurich, Institute of Medical Virology, University of Zurich, 8091 Zurich, Switzerland.</nlm:affiliation>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>University Hospital Zurich, Institute of Medical Virology, University of Zurich, 8091 Zurich</wicri:regionArea>
<wicri:noRegion>8091 Zurich</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Hamers, Raph L" sort="Hamers, Raph L" uniqKey="Hamers R" first="Raph L" last="Hamers">Raph L. Hamers</name>
<affiliation wicri:level="4">
<nlm:affiliation>Amsterdam Institute for Global Health and Development, Department of Global Health, Academic Medical Center, University of Amsterdam, Amsterdam, P.O. Box 22700, The Netherlands.</nlm:affiliation>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Amsterdam Institute for Global Health and Development, Department of Global Health, Academic Medical Center, University of Amsterdam, Amsterdam, P.O. Box 22700</wicri:regionArea>
<orgName type="university">Université d'Amsterdam</orgName>
<placeName>
<settlement type="city">Amsterdam</settlement>
<region>Hollande-Septentrionale</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Hoffmann, Christopher J" sort="Hoffmann, Christopher J" uniqKey="Hoffmann C" first="Christopher J" last="Hoffmann">Christopher J. Hoffmann</name>
<affiliation wicri:level="2">
<nlm:affiliation>Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Johns Hopkins University School of Medicine, Baltimore, MD 21205</wicri:regionArea>
<placeName>
<region type="state">Maryland</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Hunt, Gillian" sort="Hunt, Gillian" uniqKey="Hunt G" first="Gillian" last="Hunt">Gillian Hunt</name>
<affiliation wicri:level="1">
<nlm:affiliation>National Institute for Communicable Diseases, Sandringham, Johannesburg 2131, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>National Institute for Communicable Diseases, Sandringham, Johannesburg 2131</wicri:regionArea>
<wicri:noRegion>Johannesburg 2131</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Jiamsakul, Awachana" sort="Jiamsakul, Awachana" uniqKey="Jiamsakul A" first="Awachana" last="Jiamsakul">Awachana Jiamsakul</name>
<affiliation wicri:level="1">
<nlm:affiliation>The Kirby Institute, UNSW, Sydney, NSW 2052, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>The Kirby Institute, UNSW, Sydney, NSW 2052</wicri:regionArea>
<wicri:noRegion>NSW 2052</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Kaleebu, Pontiano" sort="Kaleebu, Pontiano" uniqKey="Kaleebu P" first="Pontiano" last="Kaleebu">Pontiano Kaleebu</name>
<affiliation wicri:level="1">
<nlm:affiliation>Uganda Virus Research Institute, Entebbe, P.O. Box 49, Uganda.</nlm:affiliation>
<country xml:lang="fr">Ouganda</country>
<wicri:regionArea>Uganda Virus Research Institute, Entebbe, P.O. Box 49</wicri:regionArea>
<wicri:noRegion>P.O. Box 49</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Kanki, Phyllis" sort="Kanki, Phyllis" uniqKey="Kanki P" first="Phyllis" last="Kanki">Phyllis Kanki</name>
<affiliation wicri:level="2">
<nlm:affiliation>Harvard T. H. Chan School of Public Health, Boston, MA 02115, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Harvard T. H. Chan School of Public Health, Boston, MA 02115</wicri:regionArea>
<placeName>
<region type="state">Massachusetts</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Kantor, Rami" sort="Kantor, Rami" uniqKey="Kantor R" first="Rami" last="Kantor">Rami Kantor</name>
<affiliation wicri:level="4">
<nlm:affiliation>Division of Infectious Diseases, Alpert Medical School, Brown University, Providence, RI 02903, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Division of Infectious Diseases, Alpert Medical School, Brown University, Providence, RI 02903</wicri:regionArea>
<placeName>
<region type="state">Rhode Island</region>
<settlement type="city">Providence (Rhode Island)</settlement>
</placeName>
<orgName type="university">Université Brown</orgName>
</affiliation>
</author>
<author>
<name sortKey="Kerschberger, Bernhard" sort="Kerschberger, Bernhard" uniqKey="Kerschberger B" first="Bernhard" last="Kerschberger">Bernhard Kerschberger</name>
<affiliation wicri:level="1">
<nlm:affiliation>Médecins sans Frontières, Mbabane, H100, Swaziland.</nlm:affiliation>
<country xml:lang="fr">Swaziland</country>
<wicri:regionArea>Médecins sans Frontières, Mbabane, H100</wicri:regionArea>
<wicri:noRegion>H100</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Marconi, Vincent C" sort="Marconi, Vincent C" uniqKey="Marconi V" first="Vincent C" last="Marconi">Vincent C. Marconi</name>
<affiliation wicri:level="2">
<nlm:affiliation>Emory University School of Medicine, Rollins School of Public Health, Emory University, Atlanta, GA 30322, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Emory University School of Medicine, Rollins School of Public Health, Emory University, Atlanta, GA 30322</wicri:regionArea>
<placeName>
<region type="state">Géorgie (États-Unis)</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="D Amour Ndahimana, Jean" sort="D Amour Ndahimana, Jean" uniqKey="D Amour Ndahimana J" first="Jean" last="D'Amour Ndahimana">Jean D'Amour Ndahimana</name>
<affiliation wicri:level="1">
<nlm:affiliation>HIV/AIDS Division, Rwanda Biomedical Center, Kigali, P.O. Box 87, Rwanda.</nlm:affiliation>
<country xml:lang="fr">Rwanda</country>
<wicri:regionArea>HIV/AIDS Division, Rwanda Biomedical Center, Kigali, P.O. Box 87</wicri:regionArea>
<wicri:noRegion>P.O. Box 87</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Ndembi, Nicaise" sort="Ndembi, Nicaise" uniqKey="Ndembi N" first="Nicaise" last="Ndembi">Nicaise Ndembi</name>
<affiliation wicri:level="1">
<nlm:affiliation>Institute of Human Virology Nigeria, Abuja, Federal Capital Territory, P.O. Box 9396, Nigeria.</nlm:affiliation>
<country xml:lang="fr">Nigeria</country>
<wicri:regionArea>Institute of Human Virology Nigeria, Abuja, Federal Capital Territory, P.O. Box 9396</wicri:regionArea>
<wicri:noRegion>P.O. Box 9396</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Ngo Giang Huong, Nicole" sort="Ngo Giang Huong, Nicole" uniqKey="Ngo Giang Huong N" first="Nicole" last="Ngo-Giang-Huong">Nicole Ngo-Giang-Huong</name>
<affiliation wicri:level="1">
<nlm:affiliation>Institut de Recherche pour le Developpement (IRD), UMI 174 - PHPT, 13572 Marseilles, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Institut de Recherche pour le Developpement (IRD), UMI 174 - PHPT, 13572 Marseilles</wicri:regionArea>
<wicri:noRegion>13572 Marseilles</wicri:noRegion>
<wicri:noRegion>13572 Marseilles</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Rokx, Casper" sort="Rokx, Casper" uniqKey="Rokx C" first="Casper" last="Rokx">Casper Rokx</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Internal Medicine and Infectious Diseases, Erasmus University Medical Center, 3000 CA Rotterdam, The Netherlands.</nlm:affiliation>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Department of Internal Medicine and Infectious Diseases, Erasmus University Medical Center, 3000 CA Rotterdam</wicri:regionArea>
<wicri:noRegion>3000 CA Rotterdam</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Santoro, Maria M" sort="Santoro, Maria M" uniqKey="Santoro M" first="Maria M" last="Santoro">Maria M. Santoro</name>
<affiliation wicri:level="1">
<nlm:affiliation>University of Rome Tor Vergata, 00173 Rome, Italy.</nlm:affiliation>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>University of Rome Tor Vergata, 00173 Rome</wicri:regionArea>
<placeName>
<settlement type="city">Rome</settlement>
<region nuts="2">Latium</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Schapiro, Jonathan M" sort="Schapiro, Jonathan M" uniqKey="Schapiro J" first="Jonathan M" last="Schapiro">Jonathan M. Schapiro</name>
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<name sortKey="Schmidt, Daniel" sort="Schmidt, Daniel" uniqKey="Schmidt D" first="Daniel" last="Schmidt">Daniel Schmidt</name>
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<author>
<name sortKey="Sigaloff, Kim C E" sort="Sigaloff, Kim C E" uniqKey="Sigaloff K" first="Kim C E" last="Sigaloff">Kim C E. Sigaloff</name>
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<nlm:affiliation>Amsterdam Institute for Global Health and Development, Department of Global Health, Academic Medical Center, University of Amsterdam, Amsterdam, P.O. Box 22700, The Netherlands.</nlm:affiliation>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Amsterdam Institute for Global Health and Development, Department of Global Health, Academic Medical Center, University of Amsterdam, Amsterdam, P.O. Box 22700</wicri:regionArea>
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<settlement type="city">Amsterdam</settlement>
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<name sortKey="Sirivichayakul, Sunee" sort="Sirivichayakul, Sunee" uniqKey="Sirivichayakul S" first="Sunee" last="Sirivichayakul">Sunee Sirivichayakul</name>
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<nlm:affiliation>Faculty of Medicine, Chulalongkorn University, Bangkok 10330, Thailand.</nlm:affiliation>
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<author>
<name sortKey="Skhosana, Lindiwe" sort="Skhosana, Lindiwe" uniqKey="Skhosana L" first="Lindiwe" last="Skhosana">Lindiwe Skhosana</name>
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<nlm:affiliation>Department of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Department of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050</wicri:regionArea>
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<settlement type="city">Johannesbourg</settlement>
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<name sortKey="Sunpath, Henry" sort="Sunpath, Henry" uniqKey="Sunpath H" first="Henry" last="Sunpath">Henry Sunpath</name>
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<nlm:affiliation>School of Clinical Sciences, University of KwaZulu- Natal, Durban 4041, South Africa.</nlm:affiliation>
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<wicri:regionArea>School of Clinical Sciences, University of KwaZulu- Natal, Durban 4041</wicri:regionArea>
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<author>
<name sortKey="Tang, Michele" sort="Tang, Michele" uniqKey="Tang M" first="Michele" last="Tang">Michele Tang</name>
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<nlm:affiliation>Department of Medicine, Stanford University, Stanford, CA 94305, USA.</nlm:affiliation>
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</placeName>
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<name sortKey="Yang, Chunfu" sort="Yang, Chunfu" uniqKey="Yang C" first="Chunfu" last="Yang">Chunfu Yang</name>
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<nlm:affiliation>Division of Global HIV/AIDS, Center for Global Health, Centers for Disease Control and Prevention, Port-au-Prince, Haiti.</nlm:affiliation>
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<wicri:regionArea>Division of Global HIV/AIDS, Center for Global Health, Centers for Disease Control and Prevention, Port-au-Prince</wicri:regionArea>
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</affiliation>
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<name sortKey="Carmona, Sergio" sort="Carmona, Sergio" uniqKey="Carmona S" first="Sergio" last="Carmona">Sergio Carmona</name>
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<nlm:affiliation>Department of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Department of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050</wicri:regionArea>
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<name sortKey="Gupta, Ravindra K" sort="Gupta, Ravindra K" uniqKey="Gupta R" first="Ravindra K" last="Gupta">Ravindra K. Gupta</name>
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<nlm:affiliation>UCL, Department of Infection, London WC1E 6BT, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>UCL, Department of Infection, London WC1E 6BT</wicri:regionArea>
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<author>
<name sortKey="Shafer, Robert W" sort="Shafer, Robert W" uniqKey="Shafer R" first="Robert W" last="Shafer">Robert W. Shafer</name>
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<nlm:affiliation>Department of Medicine, Stanford University, Stanford, CA 94305, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Medicine, Stanford University, Stanford, CA 94305</wicri:regionArea>
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<title level="j">EBioMedicine</title>
<idno type="eISSN">2352-3964</idno>
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<div type="abstract" xml:lang="en">Tenofovir disoproxil fumarate (TDF) genotypic resistance defined by K65R/N and/or K70E/Q/G occurs in 20% to 60% of individuals with virological failure (VF) on a WHO-recommended TDF-containing first-line regimen. However, the full spectrum of reverse transcriptase (RT) mutations selected in individuals with VF on such a regimen is not known. To identify TDF regimen-associated mutations (TRAMs), we compared the proportion of each RT mutation in 2873 individuals with VF on a WHO-recommended first-line TDF-containing regimen to its proportion in a cohort of 50,803 antiretroviral-naïve individuals. To identify TRAMs specifically associated with TDF-selection pressure, we compared the proportion of each TRAM to its proportion in a cohort of 5805 individuals with VF on a first-line thymidine analog-containing regimen. We identified 83 TRAMs including 33 NRTI-associated, 40 NNRTI-associated, and 10 uncommon mutations of uncertain provenance. Of the 33 NRTI-associated TRAMs, 12 - A62V, K65R/N, S68G/N/D, K70E/Q/T, L74I, V75L, and Y115F - were more common among individuals receiving a first-line TDF-containing compared to a first-line thymidine analog-containing regimen. These 12 TDF-selected TRAMs will be important for monitoring TDF-associated transmitted drug-resistance and for determining the extent of reduced TDF susceptibility in individuals with VF on a TDF-containing regimen.</div>
</front>
</TEI>
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<DateCreated>
<Year>2017</Year>
<Month>04</Month>
<Day>02</Day>
</DateCreated>
<DateRevised>
<Year>2017</Year>
<Month>09</Month>
<Day>27</Day>
</DateRevised>
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<Journal>
<ISSN IssnType="Electronic">2352-3964</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>18</Volume>
<PubDate>
<Year>2017</Year>
<Month>Apr</Month>
</PubDate>
</JournalIssue>
<Title>EBioMedicine</Title>
<ISOAbbreviation>EBioMedicine</ISOAbbreviation>
</Journal>
<ArticleTitle>Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration.</ArticleTitle>
<Pagination>
<MedlinePgn>225-235</MedlinePgn>
</Pagination>
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<ELocationID EIdType="doi" ValidYN="Y">10.1016/j.ebiom.2017.03.024</ELocationID>
<Abstract>
<AbstractText>Tenofovir disoproxil fumarate (TDF) genotypic resistance defined by K65R/N and/or K70E/Q/G occurs in 20% to 60% of individuals with virological failure (VF) on a WHO-recommended TDF-containing first-line regimen. However, the full spectrum of reverse transcriptase (RT) mutations selected in individuals with VF on such a regimen is not known. To identify TDF regimen-associated mutations (TRAMs), we compared the proportion of each RT mutation in 2873 individuals with VF on a WHO-recommended first-line TDF-containing regimen to its proportion in a cohort of 50,803 antiretroviral-naïve individuals. To identify TRAMs specifically associated with TDF-selection pressure, we compared the proportion of each TRAM to its proportion in a cohort of 5805 individuals with VF on a first-line thymidine analog-containing regimen. We identified 83 TRAMs including 33 NRTI-associated, 40 NNRTI-associated, and 10 uncommon mutations of uncertain provenance. Of the 33 NRTI-associated TRAMs, 12 - A62V, K65R/N, S68G/N/D, K70E/Q/T, L74I, V75L, and Y115F - were more common among individuals receiving a first-line TDF-containing compared to a first-line thymidine analog-containing regimen. These 12 TDF-selected TRAMs will be important for monitoring TDF-associated transmitted drug-resistance and for determining the extent of reduced TDF susceptibility in individuals with VF on a TDF-containing regimen.</AbstractText>
<CopyrightInformation>Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.</CopyrightInformation>
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<LastName>Rhee</LastName>
<ForeName>Soo-Yon</ForeName>
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<Affiliation>Department of Medicine, Stanford University, Stanford, CA 94305, USA. Electronic address: syrhee@stanford.edu.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Varghese</LastName>
<ForeName>Vici</ForeName>
<Initials>V</Initials>
<AffiliationInfo>
<Affiliation>Department of Medicine, Stanford University, Stanford, CA 94305, USA.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Holmes</LastName>
<ForeName>Susan P</ForeName>
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<Affiliation>Department of Statistics, Stanford University, Stanford, CA 94305, USA.</Affiliation>
</AffiliationInfo>
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<LastName>Van Zyl</LastName>
<ForeName>Gert U</ForeName>
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<Affiliation>Division of Medical Virology, Stellenbosch University, National Health Laboratory Service, Tygerberg 7505, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Steegen</LastName>
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</AffiliationInfo>
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<LastName>Boyd</LastName>
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</AffiliationInfo>
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<Affiliation>Univ Paris Diderot, Sorbonne Paris Cité, IAME, UMR 1137, INSERM, F-75018 Paris, France; AP-HP, Hôpital Bichat-Claude Bernard, Laboratoire de Virologie, F-75018 Paris, France.</Affiliation>
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<Affiliation>University Hospital Zurich, Institute of Medical Virology, University of Zurich, 8091 Zurich, Switzerland.</Affiliation>
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<LastName>Hamers</LastName>
<ForeName>Raph L</ForeName>
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<Affiliation>Amsterdam Institute for Global Health and Development, Department of Global Health, Academic Medical Center, University of Amsterdam, Amsterdam, P.O. Box 22700, The Netherlands.</Affiliation>
</AffiliationInfo>
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<LastName>Hoffmann</LastName>
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<Affiliation>Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.</Affiliation>
</AffiliationInfo>
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<LastName>Hunt</LastName>
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</AffiliationInfo>
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<LastName>Jiamsakul</LastName>
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<Affiliation>The Kirby Institute, UNSW, Sydney, NSW 2052, Australia.</Affiliation>
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<ForeName>Pontiano</ForeName>
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</AffiliationInfo>
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<Affiliation>Harvard T. H. Chan School of Public Health, Boston, MA 02115, USA.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Kantor</LastName>
<ForeName>Rami</ForeName>
<Initials>R</Initials>
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<Affiliation>Division of Infectious Diseases, Alpert Medical School, Brown University, Providence, RI 02903, USA.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Kerschberger</LastName>
<ForeName>Bernhard</ForeName>
<Initials>B</Initials>
<AffiliationInfo>
<Affiliation>Médecins sans Frontières, Mbabane, H100, Swaziland.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Marconi</LastName>
<ForeName>Vincent C</ForeName>
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<AffiliationInfo>
<Affiliation>Emory University School of Medicine, Rollins School of Public Health, Emory University, Atlanta, GA 30322, USA.</Affiliation>
</AffiliationInfo>
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<LastName>D'amour Ndahimana</LastName>
<ForeName>Jean</ForeName>
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<AffiliationInfo>
<Affiliation>HIV/AIDS Division, Rwanda Biomedical Center, Kigali, P.O. Box 87, Rwanda.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Ndembi</LastName>
<ForeName>Nicaise</ForeName>
<Initials>N</Initials>
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<Affiliation>Institute of Human Virology Nigeria, Abuja, Federal Capital Territory, P.O. Box 9396, Nigeria.</Affiliation>
</AffiliationInfo>
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<LastName>Ngo-Giang-Huong</LastName>
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<Affiliation>Institut de Recherche pour le Developpement (IRD), UMI 174 - PHPT, 13572 Marseilles, France.</Affiliation>
</AffiliationInfo>
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<LastName>Rokx</LastName>
<ForeName>Casper</ForeName>
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<Affiliation>Department of Internal Medicine and Infectious Diseases, Erasmus University Medical Center, 3000 CA Rotterdam, The Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Santoro</LastName>
<ForeName>Maria M</ForeName>
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<AffiliationInfo>
<Affiliation>University of Rome Tor Vergata, 00173 Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Schapiro</LastName>
<ForeName>Jonathan M</ForeName>
<Initials>JM</Initials>
<AffiliationInfo>
<Affiliation>National Hemophilia Center, Sheba Medical Center, Tel Aviv 5262000, Israel.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Schmidt</LastName>
<ForeName>Daniel</ForeName>
<Initials>D</Initials>
<AffiliationInfo>
<Affiliation>Department of Infectious Disease Epidemiology, HIV/AIDS, STI and Blood Born Infections, Robert Koch-Institute, 13353 Berlin, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Seu</LastName>
<ForeName>Lillian</ForeName>
<Initials>L</Initials>
<AffiliationInfo>
<Affiliation>School of Medicine, University of Alabama at Birmingham, AL 35210, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Sigaloff</LastName>
<ForeName>Kim C E</ForeName>
<Initials>KCE</Initials>
<AffiliationInfo>
<Affiliation>Amsterdam Institute for Global Health and Development, Department of Global Health, Academic Medical Center, University of Amsterdam, Amsterdam, P.O. Box 22700, The Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Sirivichayakul</LastName>
<ForeName>Sunee</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Faculty of Medicine, Chulalongkorn University, Bangkok 10330, Thailand.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Skhosana</LastName>
<ForeName>Lindiwe</ForeName>
<Initials>L</Initials>
<AffiliationInfo>
<Affiliation>Department of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Sunpath</LastName>
<ForeName>Henry</ForeName>
<Initials>H</Initials>
<AffiliationInfo>
<Affiliation>School of Clinical Sciences, University of KwaZulu- Natal, Durban 4041, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Tang</LastName>
<ForeName>Michele</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Department of Medicine, Stanford University, Stanford, CA 94305, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Yang</LastName>
<ForeName>Chunfu</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>Division of Global HIV/AIDS, Center for Global Health, Centers for Disease Control and Prevention, Port-au-Prince, Haiti.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Carmona</LastName>
<ForeName>Sergio</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Department of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Gupta</LastName>
<ForeName>Ravindra K</ForeName>
<Initials>RK</Initials>
<AffiliationInfo>
<Affiliation>UCL, Department of Infection, London WC1E 6BT, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Shafer</LastName>
<ForeName>Robert W</ForeName>
<Initials>RW</Initials>
<AffiliationInfo>
<Affiliation>Department of Medicine, Stanford University, Stanford, CA 94305, USA.</Affiliation>
</AffiliationInfo>
</Author>
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<Language>eng</Language>
<GrantList CompleteYN="Y">
<Grant>
<GrantID>R01 AI108441</GrantID>
<Acronym>AI</Acronym>
<Agency>NIAID NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R24 TW007988</GrantID>
<Acronym>TW</Acronym>
<Agency>FIC NIH HHS</Agency>
<Country>United States</Country>
</Grant>
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<ArticleDate DateType="Electronic">
<Year>2017</Year>
<Month>03</Month>
<Day>19</Day>
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