A class-wide phylogenetic assessment of Dothideomycetes
Identifieur interne : 002B80 ( Pmc/Curation ); précédent : 002B79; suivant : 002B81A class-wide phylogenetic assessment of Dothideomycetes
Auteurs : C. L. Schoch ; P. W. Crous ; J. Z. Groenewald ; E. W. A. Boehm ; T. I. Burgess ; J. De Gruyter ; G. S. De Hoog ; L. J. Dixon ; M. Grube ; C. Gueidan ; Y. Harada ; S. Hatakeyama ; K. Hirayama ; T. Hosoya ; S. M. Huhndorf ; K. D. Hyde ; E. B. G. Jones ; J. Kohlmeyer ; Kruys ; Y. M. Li ; R. Lücking ; H. T. Lumbsch ; L. Marvanová ; J. S. Mbatchou ; A. H. Mcvay ; A. N. Miller ; G. K. Mugambi ; L. Muggia ; M. P. Nelsen ; P. Nelson ; C A. Owensby ; A. J. L. Phillips ; S. Phongpaichit ; S. B. Pointing ; V. Pujade-Renaud ; H. A. Raja ; E. Rivas Plata ; B. Robbertse ; C. Ruibal ; J. Sakayaroj ; T. Sano ; L. Selbmann ; C. A. Shearer ; T. Shirouzu ; B. Slippers ; S. Suetrong ; K. Tanaka ; B. Volkmann-Kohlmeyer ; M. J. Wingfield ; A. R. Wood ; J. H. C. Woudenberg ; H. Yonezawa ; Y. Zhang ; J. W. SpataforaSource :
- Studies in Mycology [ 0166-0616 ] ; 2009.
Abstract
We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU
rDNA,
Url:
DOI: 10.3114/sim.2009.64.01
PubMed: 20169021
PubMed Central: 2816964
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A class-wide phylogenetic assessment of <italic>Dothideomycetes</italic></title><author><name sortKey="Schoch, C L" sort="Schoch, C L" uniqKey="Schoch C" first="C. L." last="Schoch">C. L. Schoch</name><affiliation><nlm:aff id="aff1"><italic>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation><nlm:aff id="aff2"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name><affiliation><nlm:aff id="aff2"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Boehm, E W A" sort="Boehm, E W A" uniqKey="Boehm E" first="E. W. A." last="Boehm">E. W. A. Boehm</name><affiliation><nlm:aff id="aff3"><italic>Department of Biological Sciences, Kean University, 1000 Morris Ave., Union, New Jersey 07083, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Burgess, T I" sort="Burgess, T I" uniqKey="Burgess T" first="T. I." last="Burgess">T. I. Burgess</name><affiliation><nlm:aff id="aff4"><italic>Biological Sciences, Murdoch University, Murdoch, 6150, Australia</italic></nlm:aff></affiliation></author><author><name sortKey="De Gruyter, J" sort="De Gruyter, J" uniqKey="De Gruyter J" first="J." last="De Gruyter">J. De Gruyter</name><affiliation><nlm:aff id="aff2"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff5"><italic>Plant Protection Service, P.O. Box 9102, 6700 HC Wageningen, The Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="De Hoog, G S" sort="De Hoog, G S" uniqKey="De Hoog G" first="G. S." last="De Hoog">G. S. De Hoog</name><affiliation><nlm:aff id="aff2"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Dixon, L J" sort="Dixon, L J" uniqKey="Dixon L" first="L. J." last="Dixon">L. J. Dixon</name><affiliation><nlm:aff id="aff6"><italic>USDA-ARS Systematic Mycology and Microbiology Laboratory, Beltsville, MD 20705, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Grube, M" sort="Grube, M" uniqKey="Grube M" first="M." last="Grube">M. Grube</name><affiliation><nlm:aff id="aff7"><italic>Institute of Plant Sciences, Karl-Franzens-University of Graz, Austria</italic></nlm:aff></affiliation></author><author><name sortKey="Gueidan, C" sort="Gueidan, C" uniqKey="Gueidan C" first="C." last="Gueidan">C. Gueidan</name><affiliation><nlm:aff id="aff2"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Harada, Y" sort="Harada, Y" uniqKey="Harada Y" first="Y." last="Harada">Y. Harada</name><affiliation><nlm:aff id="aff8"><italic>Faculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Hatakeyama, S" sort="Hatakeyama, S" uniqKey="Hatakeyama S" first="S." last="Hatakeyama">S. Hatakeyama</name><affiliation><nlm:aff id="aff8"><italic>Faculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Hirayama, K" sort="Hirayama, K" uniqKey="Hirayama K" first="K." last="Hirayama">K. Hirayama</name><affiliation><nlm:aff id="aff8"><italic>Faculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Hosoya, T" sort="Hosoya, T" uniqKey="Hosoya T" first="T." last="Hosoya">T. Hosoya</name><affiliation><nlm:aff id="aff9"><italic>National Museum of Nature and Science, Amakubo 4-1-1, Tsukuba, Ibaraki 305-0005, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Huhndorf, S M" sort="Huhndorf, S M" uniqKey="Huhndorf S" first="S. M." last="Huhndorf">S. M. Huhndorf</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Hyde, K D" sort="Hyde, K D" uniqKey="Hyde K" first="K. D." last="Hyde">K. D. Hyde</name><affiliation><nlm:aff id="aff11"><italic>School 17 of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff33"><italic>International Fungal Research Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, Yunnan, P.R. China</italic></nlm:aff></affiliation></author><author><name sortKey="Jones, E B G" sort="Jones, E B G" uniqKey="Jones E" first="E. B. G." last="Jones">E. B. G. Jones</name><affiliation><nlm:aff id="aff12"><italic>Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand</italic></nlm:aff></affiliation></author><author><name sortKey="Kohlmeyer, J" sort="Kohlmeyer, J" uniqKey="Kohlmeyer J" first="J." last="Kohlmeyer">J. Kohlmeyer</name><affiliation><nlm:aff id="aff13"><italic>Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Kruys, " sort="Kruys, " uniqKey="Kruys " first="" last="Kruys"> Kruys</name><affiliation><nlm:aff id="aff14"><italic>Department of Systematic Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden</italic></nlm:aff></affiliation></author><author><name sortKey="Li, Y M" sort="Li, Y M" uniqKey="Li Y" first="Y. M." last="Li">Y. M. Li</name><affiliation><nlm:aff id="aff33"><italic>International Fungal Research Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, Yunnan, P.R. China</italic></nlm:aff></affiliation></author><author><name sortKey="Lucking, R" sort="Lucking, R" uniqKey="Lucking R" first="R." last="Lücking">R. Lücking</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Lumbsch, H T" sort="Lumbsch, H T" uniqKey="Lumbsch H" first="H. T." last="Lumbsch">H. T. Lumbsch</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Marvanova, L" sort="Marvanova, L" uniqKey="Marvanova L" first="L." last="Marvanová">L. Marvanová</name><affiliation><nlm:aff id="aff15"><italic>Czech Collection of Mircroorganisms, Institute of Experimental Biology, Faculty of Science, Masaryk University, Tvrdého 14, Brno CZ-602 00, Czech Republic</italic></nlm:aff></affiliation></author><author><name sortKey="Mbatchou, J S" sort="Mbatchou, J S" uniqKey="Mbatchou J" first="J. S." last="Mbatchou">J. S. Mbatchou</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff16"><italic>College of Liberal Arts and Sciences, DePaul University, 1 E. Jackson Street, Chicago, Illinois 60604, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Mcvay, A H" sort="Mcvay, A H" uniqKey="Mcvay A" first="A. H." last="Mcvay">A. H. Mcvay</name><affiliation><nlm:aff id="aff17"><italic>Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Miller, A N" sort="Miller, A N" uniqKey="Miller A" first="A. N." last="Miller">A. N. Miller</name><affiliation><nlm:aff id="aff18"><italic>Illinois Natural History Survey, University of Illinois, 1816 South Oak St., Champaign, IL, 61820, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Mugambi, G K" sort="Mugambi, G K" uniqKey="Mugambi G" first="G. K." last="Mugambi">G. K. Mugambi</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff19"><italic>National Museums of Kenya, Botany Dept., P.O. Box 45166, 00100, Nairobi, Kenya</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff27"><italic>Department of Biological Sciences, University of Illinois-Chicago, 845 West Taylor Street (MC 066), Chicago, Illinois 60607, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Muggia, L" sort="Muggia, L" uniqKey="Muggia L" first="L." last="Muggia">L. Muggia</name><affiliation><nlm:aff id="aff7"><italic>Institute of Plant Sciences, Karl-Franzens-University of Graz, Austria</italic></nlm:aff></affiliation></author><author><name sortKey="Nelsen, M P" sort="Nelsen, M P" uniqKey="Nelsen M" first="M. P." last="Nelsen">M. P. Nelsen</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff20"><italic>Committee on Evolutionary Biology, University of Chicago, 1025 E. 57<sup>th</sup> Street, Chicago, Illinois 60637, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Nelson, P" sort="Nelson, P" uniqKey="Nelson P" first="P." last="Nelson">P. Nelson</name><affiliation><nlm:aff id="aff21"><italic>University of Minnesota, Ecology, Evolution, and Behavior, 100 Ecology Building, St. Paul, MN 55108, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Owensby, C A" sort="Owensby, C A" uniqKey="Owensby C" first="C A." last="Owensby">C A. Owensby</name><affiliation><nlm:aff id="aff17"><italic>Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Phillips, A J L" sort="Phillips, A J L" uniqKey="Phillips A" first="A. J. L." last="Phillips">A. J. L. Phillips</name><affiliation><nlm:aff id="aff22"><italic>Centro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciencias e Tecnologia, Universidade Nova de Lisboa, Quinta da Torre, 2829-516 Caparica, Portugal</italic></nlm:aff></affiliation></author><author><name sortKey="Phongpaichit, S" sort="Phongpaichit, S" uniqKey="Phongpaichit S" first="S." last="Phongpaichit">S. Phongpaichit</name><affiliation><nlm:aff id="aff23"><italic>Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand</italic></nlm:aff></affiliation></author><author><name sortKey="Pointing, S B" sort="Pointing, S B" uniqKey="Pointing S" first="S. B." last="Pointing">S. B. Pointing</name><affiliation><nlm:aff id="aff24"><italic>Division of Microbiology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, P.R. China</italic></nlm:aff></affiliation></author><author><name sortKey="Pujade Renaud, V" sort="Pujade Renaud, V" uniqKey="Pujade Renaud V" first="V." last="Pujade-Renaud">V. Pujade-Renaud</name><affiliation><nlm:aff id="aff25"><italic>CIRAD/PIAF, Université Blaise Pascal, Bâtiment Biologie Végétale Recherche, 24 avenue des Landais, BP 80026, 63177 Aubière, France</italic></nlm:aff></affiliation></author><author><name sortKey="Raja, H A" sort="Raja, H A" uniqKey="Raja H" first="H. A." last="Raja">H. A. Raja</name><affiliation><nlm:aff id="aff26"><italic>Department of Plant Biology, University of Illinois, 505 S. Goodwin Ave., Urbana, IL 61801, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Plata, E Rivas" sort="Plata, E Rivas" uniqKey="Plata E" first="E. Rivas" last="Plata">E. Rivas Plata</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff27"><italic>Department of Biological Sciences, University of Illinois-Chicago, 845 West Taylor Street (MC 066), Chicago, Illinois 60607, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Robbertse, B" sort="Robbertse, B" uniqKey="Robbertse B" first="B." last="Robbertse">B. Robbertse</name><affiliation><nlm:aff id="aff1"><italic>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Ruibal, C" sort="Ruibal, C" uniqKey="Ruibal C" first="C." last="Ruibal">C. Ruibal</name><affiliation><nlm:aff id="aff28"><italic>Departamento de Ingeniería y Ciencia de los Materiales, Escuela Técnica Superior de Ingenieros Industriales, Universidad Politécnica de Madrid (UPM), José Gutiérrez Abascal 2, 28006 Madrid, Spain</italic></nlm:aff></affiliation></author><author><name sortKey="Sakayaroj, J" sort="Sakayaroj, J" uniqKey="Sakayaroj J" first="J." last="Sakayaroj">J. Sakayaroj</name><affiliation><nlm:aff id="aff12"><italic>Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand</italic></nlm:aff></affiliation></author><author><name sortKey="Sano, T" sort="Sano, T" uniqKey="Sano T" first="T." last="Sano">T. Sano</name><affiliation><nlm:aff id="aff8"><italic>Faculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Selbmann, L" sort="Selbmann, L" uniqKey="Selbmann L" first="L." last="Selbmann">L. Selbmann</name><affiliation><nlm:aff id="aff29"><italic>DECOS, Università degli Studi della Tuscia, Largo dell'Università, Viterbo, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Shearer, C A" sort="Shearer, C A" uniqKey="Shearer C" first="C. A." last="Shearer">C. A. Shearer</name><affiliation><nlm:aff id="aff26"><italic>Department of Plant Biology, University of Illinois, 505 S. Goodwin Ave., Urbana, IL 61801, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Shirouzu, T" sort="Shirouzu, T" uniqKey="Shirouzu T" first="T." last="Shirouzu">T. Shirouzu</name><affiliation><nlm:aff id="aff30"><italic>Fungus/Mushroom Resource and Research Center, Tottori University, Minami 4-101, Koyama, Tottori, Tottori 680-8553 Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Slippers, B" sort="Slippers, B" uniqKey="Slippers B" first="B." last="Slippers">B. Slippers</name><affiliation><nlm:aff id="aff31"><italic>Forestry and Agricultural Biotechnology Institute (FABI), Centre of Excellence in Tree Health Biotechnology, Department of Genetics, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, 0002, South Africa</italic></nlm:aff></affiliation></author><author><name sortKey="Suetrong, S" sort="Suetrong, S" uniqKey="Suetrong S" first="S." last="Suetrong">S. Suetrong</name><affiliation><nlm:aff id="aff12"><italic>Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff23"><italic>Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand</italic></nlm:aff></affiliation></author><author><name sortKey="Tanaka, K" sort="Tanaka, K" uniqKey="Tanaka K" first="K." last="Tanaka">K. Tanaka</name><affiliation><nlm:aff id="aff8"><italic>Faculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Volkmann Kohlmeyer, B" sort="Volkmann Kohlmeyer, B" uniqKey="Volkmann Kohlmeyer B" first="B." last="Volkmann-Kohlmeyer">B. Volkmann-Kohlmeyer</name><affiliation><nlm:aff id="aff13"><italic>Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Wingfield, M J" sort="Wingfield, M J" uniqKey="Wingfield M" first="M. J." last="Wingfield">M. J. Wingfield</name><affiliation><nlm:aff id="aff31"><italic>Forestry and Agricultural Biotechnology Institute (FABI), Centre of Excellence in Tree Health Biotechnology, Department of Genetics, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, 0002, South Africa</italic></nlm:aff></affiliation></author><author><name sortKey="Wood, A R" sort="Wood, A R" uniqKey="Wood A" first="A. R." last="Wood">A. R. Wood</name><affiliation><nlm:aff id="aff32"><italic>ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch, 7599, South Africa</italic></nlm:aff></affiliation></author><author><name sortKey="Woudenberg, J H C" sort="Woudenberg, J H C" uniqKey="Woudenberg J" first="J. H. C." last="Woudenberg">J. H. C. Woudenberg</name><affiliation><nlm:aff id="aff2"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Yonezawa, H" sort="Yonezawa, H" uniqKey="Yonezawa H" first="H." last="Yonezawa">H. Yonezawa</name><affiliation><nlm:aff id="aff8"><italic>Faculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Zhang, Y" sort="Zhang, Y" uniqKey="Zhang Y" first="Y." last="Zhang">Y. Zhang</name><affiliation><nlm:aff id="aff24"><italic>Division of Microbiology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, P.R. China</italic></nlm:aff></affiliation></author><author><name sortKey="Spatafora, J W" sort="Spatafora, J W" uniqKey="Spatafora J" first="J. W." last="Spatafora">J. W. Spatafora</name><affiliation><nlm:aff id="aff17"><italic>Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 U.S.A.</italic></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">20169021</idno><idno type="pmc">2816964</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2816964</idno><idno type="RBID">PMC:2816964</idno><idno type="doi">10.3114/sim.2009.64.01</idno><date when="2009">2009</date><idno type="wicri:Area/Pmc/Corpus">002D30</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">002D30</idno><idno type="wicri:Area/Pmc/Curation">002B80</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">002B80</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">A class-wide phylogenetic assessment of <italic>Dothideomycetes</italic></title><author><name sortKey="Schoch, C L" sort="Schoch, C L" uniqKey="Schoch C" first="C. L." last="Schoch">C. L. Schoch</name><affiliation><nlm:aff id="aff1"><italic>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation><nlm:aff id="aff2"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name><affiliation><nlm:aff id="aff2"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Boehm, E W A" sort="Boehm, E W A" uniqKey="Boehm E" first="E. W. A." last="Boehm">E. W. A. Boehm</name><affiliation><nlm:aff id="aff3"><italic>Department of Biological Sciences, Kean University, 1000 Morris Ave., Union, New Jersey 07083, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Burgess, T I" sort="Burgess, T I" uniqKey="Burgess T" first="T. I." last="Burgess">T. I. Burgess</name><affiliation><nlm:aff id="aff4"><italic>Biological Sciences, Murdoch University, Murdoch, 6150, Australia</italic></nlm:aff></affiliation></author><author><name sortKey="De Gruyter, J" sort="De Gruyter, J" uniqKey="De Gruyter J" first="J." last="De Gruyter">J. De Gruyter</name><affiliation><nlm:aff id="aff2"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff5"><italic>Plant Protection Service, P.O. Box 9102, 6700 HC Wageningen, The Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="De Hoog, G S" sort="De Hoog, G S" uniqKey="De Hoog G" first="G. S." last="De Hoog">G. S. De Hoog</name><affiliation><nlm:aff id="aff2"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Dixon, L J" sort="Dixon, L J" uniqKey="Dixon L" first="L. J." last="Dixon">L. J. Dixon</name><affiliation><nlm:aff id="aff6"><italic>USDA-ARS Systematic Mycology and Microbiology Laboratory, Beltsville, MD 20705, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Grube, M" sort="Grube, M" uniqKey="Grube M" first="M." last="Grube">M. Grube</name><affiliation><nlm:aff id="aff7"><italic>Institute of Plant Sciences, Karl-Franzens-University of Graz, Austria</italic></nlm:aff></affiliation></author><author><name sortKey="Gueidan, C" sort="Gueidan, C" uniqKey="Gueidan C" first="C." last="Gueidan">C. Gueidan</name><affiliation><nlm:aff id="aff2"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Harada, Y" sort="Harada, Y" uniqKey="Harada Y" first="Y." last="Harada">Y. Harada</name><affiliation><nlm:aff id="aff8"><italic>Faculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Hatakeyama, S" sort="Hatakeyama, S" uniqKey="Hatakeyama S" first="S." last="Hatakeyama">S. Hatakeyama</name><affiliation><nlm:aff id="aff8"><italic>Faculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Hirayama, K" sort="Hirayama, K" uniqKey="Hirayama K" first="K." last="Hirayama">K. Hirayama</name><affiliation><nlm:aff id="aff8"><italic>Faculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Hosoya, T" sort="Hosoya, T" uniqKey="Hosoya T" first="T." last="Hosoya">T. Hosoya</name><affiliation><nlm:aff id="aff9"><italic>National Museum of Nature and Science, Amakubo 4-1-1, Tsukuba, Ibaraki 305-0005, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Huhndorf, S M" sort="Huhndorf, S M" uniqKey="Huhndorf S" first="S. M." last="Huhndorf">S. M. Huhndorf</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Hyde, K D" sort="Hyde, K D" uniqKey="Hyde K" first="K. D." last="Hyde">K. D. Hyde</name><affiliation><nlm:aff id="aff11"><italic>School 17 of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff33"><italic>International Fungal Research Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, Yunnan, P.R. China</italic></nlm:aff></affiliation></author><author><name sortKey="Jones, E B G" sort="Jones, E B G" uniqKey="Jones E" first="E. B. G." last="Jones">E. B. G. Jones</name><affiliation><nlm:aff id="aff12"><italic>Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand</italic></nlm:aff></affiliation></author><author><name sortKey="Kohlmeyer, J" sort="Kohlmeyer, J" uniqKey="Kohlmeyer J" first="J." last="Kohlmeyer">J. Kohlmeyer</name><affiliation><nlm:aff id="aff13"><italic>Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Kruys, " sort="Kruys, " uniqKey="Kruys " first="" last="Kruys"> Kruys</name><affiliation><nlm:aff id="aff14"><italic>Department of Systematic Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden</italic></nlm:aff></affiliation></author><author><name sortKey="Li, Y M" sort="Li, Y M" uniqKey="Li Y" first="Y. M." last="Li">Y. M. Li</name><affiliation><nlm:aff id="aff33"><italic>International Fungal Research Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, Yunnan, P.R. China</italic></nlm:aff></affiliation></author><author><name sortKey="Lucking, R" sort="Lucking, R" uniqKey="Lucking R" first="R." last="Lücking">R. Lücking</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Lumbsch, H T" sort="Lumbsch, H T" uniqKey="Lumbsch H" first="H. T." last="Lumbsch">H. T. Lumbsch</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Marvanova, L" sort="Marvanova, L" uniqKey="Marvanova L" first="L." last="Marvanová">L. Marvanová</name><affiliation><nlm:aff id="aff15"><italic>Czech Collection of Mircroorganisms, Institute of Experimental Biology, Faculty of Science, Masaryk University, Tvrdého 14, Brno CZ-602 00, Czech Republic</italic></nlm:aff></affiliation></author><author><name sortKey="Mbatchou, J S" sort="Mbatchou, J S" uniqKey="Mbatchou J" first="J. S." last="Mbatchou">J. S. Mbatchou</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff16"><italic>College of Liberal Arts and Sciences, DePaul University, 1 E. Jackson Street, Chicago, Illinois 60604, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Mcvay, A H" sort="Mcvay, A H" uniqKey="Mcvay A" first="A. H." last="Mcvay">A. H. Mcvay</name><affiliation><nlm:aff id="aff17"><italic>Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Miller, A N" sort="Miller, A N" uniqKey="Miller A" first="A. N." last="Miller">A. N. Miller</name><affiliation><nlm:aff id="aff18"><italic>Illinois Natural History Survey, University of Illinois, 1816 South Oak St., Champaign, IL, 61820, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Mugambi, G K" sort="Mugambi, G K" uniqKey="Mugambi G" first="G. K." last="Mugambi">G. K. Mugambi</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff19"><italic>National Museums of Kenya, Botany Dept., P.O. Box 45166, 00100, Nairobi, Kenya</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff27"><italic>Department of Biological Sciences, University of Illinois-Chicago, 845 West Taylor Street (MC 066), Chicago, Illinois 60607, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Muggia, L" sort="Muggia, L" uniqKey="Muggia L" first="L." last="Muggia">L. Muggia</name><affiliation><nlm:aff id="aff7"><italic>Institute of Plant Sciences, Karl-Franzens-University of Graz, Austria</italic></nlm:aff></affiliation></author><author><name sortKey="Nelsen, M P" sort="Nelsen, M P" uniqKey="Nelsen M" first="M. P." last="Nelsen">M. P. Nelsen</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff20"><italic>Committee on Evolutionary Biology, University of Chicago, 1025 E. 57<sup>th</sup> Street, Chicago, Illinois 60637, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Nelson, P" sort="Nelson, P" uniqKey="Nelson P" first="P." last="Nelson">P. Nelson</name><affiliation><nlm:aff id="aff21"><italic>University of Minnesota, Ecology, Evolution, and Behavior, 100 Ecology Building, St. Paul, MN 55108, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Owensby, C A" sort="Owensby, C A" uniqKey="Owensby C" first="C A." last="Owensby">C A. Owensby</name><affiliation><nlm:aff id="aff17"><italic>Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Phillips, A J L" sort="Phillips, A J L" uniqKey="Phillips A" first="A. J. L." last="Phillips">A. J. L. Phillips</name><affiliation><nlm:aff id="aff22"><italic>Centro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciencias e Tecnologia, Universidade Nova de Lisboa, Quinta da Torre, 2829-516 Caparica, Portugal</italic></nlm:aff></affiliation></author><author><name sortKey="Phongpaichit, S" sort="Phongpaichit, S" uniqKey="Phongpaichit S" first="S." last="Phongpaichit">S. Phongpaichit</name><affiliation><nlm:aff id="aff23"><italic>Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand</italic></nlm:aff></affiliation></author><author><name sortKey="Pointing, S B" sort="Pointing, S B" uniqKey="Pointing S" first="S. B." last="Pointing">S. B. Pointing</name><affiliation><nlm:aff id="aff24"><italic>Division of Microbiology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, P.R. China</italic></nlm:aff></affiliation></author><author><name sortKey="Pujade Renaud, V" sort="Pujade Renaud, V" uniqKey="Pujade Renaud V" first="V." last="Pujade-Renaud">V. Pujade-Renaud</name><affiliation><nlm:aff id="aff25"><italic>CIRAD/PIAF, Université Blaise Pascal, Bâtiment Biologie Végétale Recherche, 24 avenue des Landais, BP 80026, 63177 Aubière, France</italic></nlm:aff></affiliation></author><author><name sortKey="Raja, H A" sort="Raja, H A" uniqKey="Raja H" first="H. A." last="Raja">H. A. Raja</name><affiliation><nlm:aff id="aff26"><italic>Department of Plant Biology, University of Illinois, 505 S. Goodwin Ave., Urbana, IL 61801, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Plata, E Rivas" sort="Plata, E Rivas" uniqKey="Plata E" first="E. Rivas" last="Plata">E. Rivas Plata</name><affiliation><nlm:aff id="aff10"><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff27"><italic>Department of Biological Sciences, University of Illinois-Chicago, 845 West Taylor Street (MC 066), Chicago, Illinois 60607, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Robbertse, B" sort="Robbertse, B" uniqKey="Robbertse B" first="B." last="Robbertse">B. Robbertse</name><affiliation><nlm:aff id="aff1"><italic>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Ruibal, C" sort="Ruibal, C" uniqKey="Ruibal C" first="C." last="Ruibal">C. Ruibal</name><affiliation><nlm:aff id="aff28"><italic>Departamento de Ingeniería y Ciencia de los Materiales, Escuela Técnica Superior de Ingenieros Industriales, Universidad Politécnica de Madrid (UPM), José Gutiérrez Abascal 2, 28006 Madrid, Spain</italic></nlm:aff></affiliation></author><author><name sortKey="Sakayaroj, J" sort="Sakayaroj, J" uniqKey="Sakayaroj J" first="J." last="Sakayaroj">J. Sakayaroj</name><affiliation><nlm:aff id="aff12"><italic>Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand</italic></nlm:aff></affiliation></author><author><name sortKey="Sano, T" sort="Sano, T" uniqKey="Sano T" first="T." last="Sano">T. Sano</name><affiliation><nlm:aff id="aff8"><italic>Faculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Selbmann, L" sort="Selbmann, L" uniqKey="Selbmann L" first="L." last="Selbmann">L. Selbmann</name><affiliation><nlm:aff id="aff29"><italic>DECOS, Università degli Studi della Tuscia, Largo dell'Università, Viterbo, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Shearer, C A" sort="Shearer, C A" uniqKey="Shearer C" first="C. A." last="Shearer">C. A. Shearer</name><affiliation><nlm:aff id="aff26"><italic>Department of Plant Biology, University of Illinois, 505 S. Goodwin Ave., Urbana, IL 61801, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Shirouzu, T" sort="Shirouzu, T" uniqKey="Shirouzu T" first="T." last="Shirouzu">T. Shirouzu</name><affiliation><nlm:aff id="aff30"><italic>Fungus/Mushroom Resource and Research Center, Tottori University, Minami 4-101, Koyama, Tottori, Tottori 680-8553 Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Slippers, B" sort="Slippers, B" uniqKey="Slippers B" first="B." last="Slippers">B. Slippers</name><affiliation><nlm:aff id="aff31"><italic>Forestry and Agricultural Biotechnology Institute (FABI), Centre of Excellence in Tree Health Biotechnology, Department of Genetics, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, 0002, South Africa</italic></nlm:aff></affiliation></author><author><name sortKey="Suetrong, S" sort="Suetrong, S" uniqKey="Suetrong S" first="S." last="Suetrong">S. Suetrong</name><affiliation><nlm:aff id="aff12"><italic>Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff23"><italic>Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand</italic></nlm:aff></affiliation></author><author><name sortKey="Tanaka, K" sort="Tanaka, K" uniqKey="Tanaka K" first="K." last="Tanaka">K. Tanaka</name><affiliation><nlm:aff id="aff8"><italic>Faculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Volkmann Kohlmeyer, B" sort="Volkmann Kohlmeyer, B" uniqKey="Volkmann Kohlmeyer B" first="B." last="Volkmann-Kohlmeyer">B. Volkmann-Kohlmeyer</name><affiliation><nlm:aff id="aff13"><italic>Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.</italic></nlm:aff></affiliation></author><author><name sortKey="Wingfield, M J" sort="Wingfield, M J" uniqKey="Wingfield M" first="M. J." last="Wingfield">M. J. Wingfield</name><affiliation><nlm:aff id="aff31"><italic>Forestry and Agricultural Biotechnology Institute (FABI), Centre of Excellence in Tree Health Biotechnology, Department of Genetics, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, 0002, South Africa</italic></nlm:aff></affiliation></author><author><name sortKey="Wood, A R" sort="Wood, A R" uniqKey="Wood A" first="A. R." last="Wood">A. R. Wood</name><affiliation><nlm:aff id="aff32"><italic>ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch, 7599, South Africa</italic></nlm:aff></affiliation></author><author><name sortKey="Woudenberg, J H C" sort="Woudenberg, J H C" uniqKey="Woudenberg J" first="J. H. C." last="Woudenberg">J. H. C. Woudenberg</name><affiliation><nlm:aff id="aff2"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Yonezawa, H" sort="Yonezawa, H" uniqKey="Yonezawa H" first="H." last="Yonezawa">H. Yonezawa</name><affiliation><nlm:aff id="aff8"><italic>Faculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan</italic></nlm:aff></affiliation></author><author><name sortKey="Zhang, Y" sort="Zhang, Y" uniqKey="Zhang Y" first="Y." last="Zhang">Y. Zhang</name><affiliation><nlm:aff id="aff24"><italic>Division of Microbiology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, P.R. China</italic></nlm:aff></affiliation></author><author><name sortKey="Spatafora, J W" sort="Spatafora, J W" uniqKey="Spatafora J" first="J. W." last="Spatafora">J. W. Spatafora</name><affiliation><nlm:aff id="aff17"><italic>Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 U.S.A.</italic></nlm:aff></affiliation></author></analytic><series><title level="j">Studies in Mycology</title><idno type="ISSN">0166-0616</idno><idno type="eISSN">1872-9797</idno><imprint><date when="2009">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU
rDNA, <italic>TEF1</italic>, <italic>RPB1</italic> and <italic>RPB2</italic>, for 356 isolates and 41
families (six newly described in this volume) in <italic>Dothideomycetes</italic>. All
currently accepted orders in the class are represented for the first time in
addition to numerous previously unplaced lineages. Subclass
<italic>Pleosporomycetidae</italic> is expanded to include the aquatic order
<italic>Jahnulales.</italic> An ancestral reconstruction of basic nutritional modes
supports numerous transitions from saprobic life histories to plant associated
and lichenised modes and a transition from terrestrial to aquatic habitats are
confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with
other fungi finds a high level of unique protein associated with the class,
supporting its delineation as a separate taxon.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Stud Mycol</journal-id><journal-id journal-id-type="publisher-id">simycol</journal-id><journal-title-group><journal-title>Studies in Mycology</journal-title></journal-title-group><issn pub-type="ppub">0166-0616</issn><issn pub-type="epub">1872-9797</issn><publisher><publisher-name>CBS Fungal Biodiversity Centre</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">20169021</article-id><article-id pub-id-type="pmc">2816964</article-id><article-id pub-id-type="publisher-id">0001</article-id><article-id pub-id-type="doi">10.3114/sim.2009.64.01</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group></article-categories><title-group><article-title>A class-wide phylogenetic assessment of <italic>Dothideomycetes</italic></article-title></title-group><contrib-group><contrib 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Box 85167, 3508 AD Utrecht, Netherlands</italic></aff><aff id="aff3"><label>3</label><italic>Department of Biological Sciences, Kean University, 1000 Morris Ave., Union, New Jersey 07083, U.S.A.</italic></aff><aff id="aff4"><label>4</label><italic>Biological Sciences, Murdoch University, Murdoch, 6150, Australia</italic></aff><aff id="aff5"><label>5</label><italic>Plant Protection Service, P.O. Box 9102, 6700 HC Wageningen, The Netherlands</italic></aff><aff id="aff6"><label>6</label><italic>USDA-ARS Systematic Mycology and Microbiology Laboratory, Beltsville, MD 20705, U.S.A.</italic></aff><aff id="aff7"><label>7</label><italic>Institute of Plant Sciences, Karl-Franzens-University of Graz, Austria</italic></aff><aff id="aff8"><label>8</label><italic>Faculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan</italic></aff><aff id="aff9"><label>9</label><italic>National Museum of Nature and Science, Amakubo 4-1-1, Tsukuba, Ibaraki 305-0005, Japan</italic></aff><aff id="aff10"><label>10</label><italic>Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.</italic></aff><aff id="aff11"><label>11</label><italic>School 17 of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand</italic></aff><aff id="aff12"><label>12</label><italic>Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand</italic></aff><aff id="aff13"><label>13</label><italic>Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.</italic></aff><aff id="aff14"><label>14</label><italic>Department of Systematic Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden</italic></aff><aff id="aff15"><label>15</label><italic>Czech Collection of Mircroorganisms, Institute of Experimental Biology, Faculty of Science, Masaryk University, Tvrdého 14, Brno CZ-602 00, Czech Republic</italic></aff><aff id="aff16"><label>16</label><italic>College of Liberal Arts and Sciences, DePaul University, 1 E. Jackson Street, Chicago, Illinois 60604, U.S.A.</italic></aff><aff id="aff17"><label>17</label><italic>Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 U.S.A.</italic></aff><aff id="aff18"><label>18</label><italic>Illinois Natural History Survey, University of Illinois, 1816 South Oak St., Champaign, IL, 61820, U.S.A.</italic></aff><aff id="aff19"><label>19</label><italic>National Museums of Kenya, Botany Dept., P.O. Box 45166, 00100, Nairobi, Kenya</italic></aff><aff id="aff20"><label>20</label><italic>Committee on Evolutionary Biology, University of Chicago, 1025 E. 57<sup>th</sup> Street, Chicago, Illinois 60637, U.S.A.</italic></aff><aff id="aff21"><label>21</label><italic>University of Minnesota, Ecology, Evolution, and Behavior, 100 Ecology Building, St. Paul, MN 55108, U.S.A.</italic></aff><aff id="aff22"><label>22</label><italic>Centro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciencias e Tecnologia, Universidade Nova de Lisboa, Quinta da Torre, 2829-516 Caparica, Portugal</italic></aff><aff id="aff23"><label>23</label><italic>Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand</italic></aff><aff id="aff24"><label>24</label><italic>Division of Microbiology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, P.R. China</italic></aff><aff id="aff25"><label>25</label><italic>CIRAD/PIAF, Université Blaise Pascal, Bâtiment Biologie Végétale Recherche, 24 avenue des Landais, BP 80026, 63177 Aubière, France</italic></aff><aff id="aff26"><label>26</label><italic>Department of Plant Biology, University of Illinois, 505 S. Goodwin Ave., Urbana, IL 61801, U.S.A.</italic></aff><aff id="aff27"><label>27</label><italic>Department of Biological Sciences, University of Illinois-Chicago, 845 West Taylor Street (MC 066), Chicago, Illinois 60607, U.S.A.</italic></aff><aff id="aff28"><label>28</label><italic>Departamento de Ingeniería y Ciencia de los Materiales, Escuela Técnica Superior de Ingenieros Industriales, Universidad Politécnica de Madrid (UPM), José Gutiérrez Abascal 2, 28006 Madrid, Spain</italic></aff><aff id="aff29"><label>29</label><italic>DECOS, Università degli Studi della Tuscia, Largo dell'Università, Viterbo, Italy</italic></aff><aff id="aff30"><label>30</label><italic>Fungus/Mushroom Resource and Research Center, Tottori University, Minami 4-101, Koyama, Tottori, Tottori 680-8553 Japan</italic></aff><aff id="aff31"><label>31</label><italic>Forestry and Agricultural Biotechnology Institute (FABI), Centre of Excellence in Tree Health Biotechnology, Department of Genetics, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, 0002, South Africa</italic></aff><aff id="aff32"><label>32</label><italic>ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch, 7599, South Africa</italic></aff><aff id="aff33"><label>33</label><italic>International Fungal Research Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, Yunnan, P.R. China</italic></aff><author-notes><corresp id="cor1"><label>*</label><italic>Correspondence</italic>: Conrad L. Schoch,
<email>schoch2@ncbi.nlm.nih.gov</email></corresp></author-notes><pub-date pub-type="ppub"><year>2009</year></pub-date><volume>64</volume><issue-title>A phylogenetic re-evaluation of
<italic>Dothideomycetes</italic></issue-title><fpage>1</fpage><lpage>15-S10</lpage><permissions><copyright-statement>Copyright © Copyright 2009 CBS-KNAW Fungal Biodiversity
Centre</copyright-statement><copyright-year>2009</copyright-year><license><license-p>You are free to share - to copy, distribute and transmit the work, under
the following conditions:</license-p><license-p><bold>Attribution:</bold> You must attribute
the work in the manner specified by the author or licensor (but not in any way
that suggests that they endorse you or your use of the
work).</license-p><license-p><bold>Non-commercial:</bold> You may not use this work for
commercial purposes.</license-p><license-p><bold>No derivative works:</bold> You may not
alter, transform, or build upon this work.</license-p><license-p>For any reuse or
distribution, you must make clear to others the license terms of this work,
which can be found at
<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode">http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode.</ext-link> Any of the above
conditions can be waived if you get permission from the copyright holder.
Nothing in this license impairs or restricts the author's moral rights.</license-p></license></permissions><self-uri xlink:title="pdf" xlink:href="1.pdf"></self-uri><abstract><p>We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU
rDNA, <italic>TEF1</italic>, <italic>RPB1</italic> and <italic>RPB2</italic>, for 356 isolates and 41
families (six newly described in this volume) in <italic>Dothideomycetes</italic>. All
currently accepted orders in the class are represented for the first time in
addition to numerous previously unplaced lineages. Subclass
<italic>Pleosporomycetidae</italic> is expanded to include the aquatic order
<italic>Jahnulales.</italic> An ancestral reconstruction of basic nutritional modes
supports numerous transitions from saprobic life histories to plant associated
and lichenised modes and a transition from terrestrial to aquatic habitats are
confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with
other fungi finds a high level of unique protein associated with the class,
supporting its delineation as a separate taxon.</p></abstract><kwd-group><kwd><italic>Ascomycota</italic></kwd><kwd><italic>Pezizomycotina</italic></kwd><kwd>Dothideomyceta</kwd><kwd>fungal evolution</kwd><kwd>lichens</kwd><kwd>multigene phylogeny</kwd><kwd>phylogenomics</kwd><kwd>plant pathogens</kwd><kwd>saprobes</kwd><kwd>Tree of Life</kwd></kwd-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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