Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework
Identifieur interne : 002B79 ( Pmc/Curation ); précédent : 002B78; suivant : 002B80Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework
Auteurs : B. Slippers [Afrique du Sud] ; E. Boissin [Afrique du Sud, France] ; A. J. L. Phillips [Portugal] ; J. Z. Groenewald [Pays-Bas] ; L. Lombard [Pays-Bas] ; M. J. Wingfield [Afrique du Sud] ; A. Postma [Afrique du Sud] ; T. Burgess [Australie] ; P. W. Crous [Afrique du Sud, Pays-Bas]Source :
- Studies in Mycology [ 0166-0616 ] ; 2013.
Abstract
The order
Url:
DOI: 10.3114/sim0020
PubMed: 24302789
PubMed Central: 3825231
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Phylogenetic lineages in the <italic>Botryosphaeriales</italic>
: a systematic and evolutionary framework</title>
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<author><name sortKey="Lombard, L" sort="Lombard, L" uniqKey="Lombard L" first="L." last="Lombard">L. Lombard</name>
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<author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name>
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<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea> Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002</wicri:regionArea>
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<series><title level="j">Studies in Mycology</title>
<idno type="ISSN">0166-0616</idno>
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<front><div type="abstract" xml:lang="en"><p id="P6">The order <italic>Botryosphaeriales</italic>
represents several ecologically diverse fungal families that are commonly isolated as endophytes or pathogens from various woody hosts. The taxonomy of members of this order has been strongly influenced by sequence-based phylogenetics, and the abandonment of dual nomenclature. In this study, the phylogenetic relationships of the genera known from culture are evaluated based on DNA sequence data for six loci (SSU, LSU, ITS, EF1, BT, mtSSU). The results make it possible to recognise a total of six families. Other than the <italic>Botryosphaeriaceae</italic>
(17 genera), <italic>Phyllostictaceae</italic>
(<italic>Phyllosticta</italic>
) and <italic>Planistromellaceae</italic>
(<italic>Kellermania</italic>
), newly introduced families include <italic>Aplosporellaceae</italic>
(<italic>Aplosporella</italic>
and <italic>Bagnisiella</italic>
), <italic>Melanopsaceae</italic>
(<italic>Melanops</italic>
), and <italic>Saccharataceae</italic>
(<italic>Saccharata</italic>
). Furthermore, the evolution of morphological characters in the <italic>Botryosphaeriaceae</italic>
were investigated via analysis of phylogeny-trait association. None of the traits presented a significant phylogenetic signal, suggesting that conidial and ascospore pigmentation, septation and appendages evolved more than once in the family. Molecular clock dating on radiations within the <italic>Botryosphaeriales</italic>
based on estimated mutation rates of the rDNA SSU locus, suggests that the order originated in the Cretaceous period around 103 (45-188) mya, with most of the diversification in the Tertiary period. This coincides with important periods of radiation and spread of the main group of plants that these fungi infect, namely woody Angiosperms. The resulting host-associations and distribution could have influenced the diversification of these fungi.</p>
<sec id="S1"><title>Taxonomic novelties:</title>
<p id="P7"><bold>New families</bold>
- <italic>Aplosporellaceae</italic>
Slippers, Boissin & Crous, <italic>Melanopsaceae</italic>
Phillips, Slippers, Boissin & Crous, <italic>Saccharataceae</italic>
Slippers, Boissin & Crous.</p>
</sec>
</div>
</front>
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</author>
<author><name sortKey="Vanev, S" uniqKey="Vanev S">S Vanev</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Abdollahzadeh, J" uniqKey="Abdollahzadeh J">J Abdollahzadeh</name>
</author>
<author><name sortKey="Mohammadi Goltapeh, E" uniqKey="Mohammadi Goltapeh E">E Mohammadi Goltapeh</name>
</author>
<author><name sortKey="Javadi, A" uniqKey="Javadi A">A Javadi</name>
</author>
<author><name sortKey="Shams Bakhsh, M" uniqKey="Shams Bakhsh M">M Shams-bakhsh</name>
</author>
<author><name sortKey="Zare, R" uniqKey="Zare R">R Zare</name>
</author>
<author><name sortKey="Phillips, Ajl" uniqKey="Phillips A">AJL Phillips</name>
</author>
</analytic>
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<biblStruct><analytic><author><name sortKey="Alves, A" uniqKey="Alves A">A Alves</name>
</author>
<author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name>
</author>
<author><name sortKey="Correia, A" uniqKey="Correia A">A Correia</name>
</author>
<author><name sortKey="Phillips, Ajl" uniqKey="Phillips A">AJL Phillips</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Barber, P" uniqKey="Barber P">P Barber</name>
</author>
<author><name sortKey="Burgess, T" uniqKey="Burgess T">T Burgess</name>
</author>
<author><name sortKey="Hardy, G" uniqKey="Hardy G">G Hardy</name>
</author>
<author><name sortKey="Slippers, B" uniqKey="Slippers B">B Slippers</name>
</author>
<author><name sortKey="Keane, P" uniqKey="Keane P">P Keane</name>
</author>
<author><name sortKey="Wingfield, Mj" uniqKey="Wingfield M">MJ Wingfield</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Barker, Np" uniqKey="Barker N">NP Barker</name>
</author>
<author><name sortKey="Weston, Ph" uniqKey="Weston P">PH Weston</name>
</author>
<author><name sortKey="Rutschmann, F" uniqKey="Rutschmann F">F Rutschmann</name>
</author>
<author><name sortKey="Sauquet, H" uniqKey="Sauquet H">H Sauquet</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bell, Cd" uniqKey="Bell C">CD Bell</name>
</author>
<author><name sortKey="Soltis, De" uniqKey="Soltis D">DE Soltis</name>
</author>
<author><name sortKey="Soltis, Ps" uniqKey="Soltis P">PS Soltis</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Berbee, Ml" uniqKey="Berbee M">ML Berbee</name>
</author>
<author><name sortKey="Taylor, Jw" uniqKey="Taylor J">JW Taylor</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bihon, W" uniqKey="Bihon W">W Bihon</name>
</author>
<author><name sortKey="Burgess, T" uniqKey="Burgess T">T Burgess</name>
</author>
<author><name sortKey="Slippers, B" uniqKey="Slippers B">B Slippers</name>
</author>
<author><name sortKey="Wingfield, Mj" uniqKey="Wingfield M">MJ Wingfield</name>
</author>
<author><name sortKey="Wingfield, Bd" uniqKey="Wingfield B">BD Wingfield</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bull, Jj" uniqKey="Bull J">JJ Bull</name>
</author>
<author><name sortKey="Huelsenbeck, Jp" uniqKey="Huelsenbeck J">JP Huelsenbeck</name>
</author>
<author><name sortKey="Cunningham, Cw" uniqKey="Cunningham C">CW Cunningham</name>
</author>
<author><name sortKey="Swofford, Dl" uniqKey="Swofford D">DL Swofford</name>
</author>
<author><name sortKey="Waddell, Pj" uniqKey="Waddell P">PJ Waddell</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name>
</author>
<author><name sortKey="Denman, S" uniqKey="Denman S">S Denman</name>
</author>
<author><name sortKey="Taylor, Je" uniqKey="Taylor J">JE Taylor</name>
</author>
<author><name sortKey="Swart, L" uniqKey="Swart L">L Swart</name>
</author>
<author><name sortKey="Palm, Me" uniqKey="Palm M">ME Palm</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name>
</author>
<author><name sortKey="Groenewald, Jz" uniqKey="Groenewald J">JZ Groenewald</name>
</author>
<author><name sortKey="Taylor, Je" uniqKey="Taylor J">JE Taylor</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name>
</author>
<author><name sortKey="Slippers, B" uniqKey="Slippers B">B Slippers</name>
</author>
<author><name sortKey="Wingfield, Mj" uniqKey="Wingfield M">MJ Wingfield</name>
</author>
<author><name sortKey="Rheeder, J" uniqKey="Rheeder J">J Rheeder</name>
</author>
<author><name sortKey="Marasas, Wfo" uniqKey="Marasas W">WFO Marasas</name>
</author>
<author><name sortKey="Philips, Ajl" uniqKey="Philips A">AJL Philips</name>
</author>
<author><name sortKey="Alves, A" uniqKey="Alves A">A Alves</name>
</author>
<author><name sortKey="Burgess, T" uniqKey="Burgess T">T Burgess</name>
</author>
<author><name sortKey="Barber, P" uniqKey="Barber P">P Barber</name>
</author>
<author><name sortKey="Groenewald, Jz" uniqKey="Groenewald J">JZ Groenewald</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name>
</author>
<author><name sortKey="Wood, Ar" uniqKey="Wood A">AR Wood</name>
</author>
<author><name sortKey="Okada, G" uniqKey="Okada G">G Okada</name>
</author>
<author><name sortKey="Groenewald, Jz" uniqKey="Groenewald J">JZ Groenewald</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Cunningham, Cw" uniqKey="Cunningham C">CW Cunningham</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Dakin, N" uniqKey="Dakin N">N Dakin</name>
</author>
<author><name sortKey="White, D" uniqKey="White D">D White</name>
</author>
<author><name sortKey="Hardy, Gstj" uniqKey="Hardy G">GStJ Hardy</name>
</author>
<author><name sortKey="Burgess, Ti" uniqKey="Burgess T">TI Burgess</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Damm, U" uniqKey="Damm U">U Damm</name>
</author>
<author><name sortKey="Fourie, Ph" uniqKey="Fourie P">PH Fourie</name>
</author>
<author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name>
</author>
</analytic>
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<biblStruct><analytic><author><name sortKey="Denman, S" uniqKey="Denman S">S Denman</name>
</author>
<author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name>
</author>
<author><name sortKey="Groenewald, Jz" uniqKey="Groenewald J">JZ Groenewald</name>
</author>
<author><name sortKey="Slippers, B" uniqKey="Slippers B">B Slippers</name>
</author>
<author><name sortKey="Wingfield, Bd" uniqKey="Wingfield B">BD Wingfield</name>
</author>
<author><name sortKey="Wingfield, Mj" uniqKey="Wingfield M">MJ Wingfield</name>
</author>
</analytic>
</biblStruct>
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</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Stud Mycol</journal-id>
<journal-id journal-id-type="iso-abbrev">Stud. Mycol</journal-id>
<journal-id journal-id-type="hwp">simycol</journal-id>
<journal-title-group><journal-title>Studies in Mycology</journal-title>
</journal-title-group>
<issn pub-type="ppub">0166-0616</issn>
<issn pub-type="epub">1872-9797</issn>
<publisher><publisher-name>CBS Fungal Biodiversity Centre</publisher-name>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">24302789</article-id>
<article-id pub-id-type="pmc">3825231</article-id>
<article-id pub-id-type="doi">10.3114/sim0020</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Articles</subject>
</subj-group>
</article-categories>
<title-group><article-title>Phylogenetic lineages in the <italic>Botryosphaeriales</italic>
: a systematic and evolutionary framework</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Slippers</surname>
<given-names>B.</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
<xref ref-type="author-notes" rid="fn1">#</xref>
<xref ref-type="corresp" rid="cor1">*</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Boissin</surname>
<given-names>E.</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
<xref ref-type="aff" rid="A2">2</xref>
<xref ref-type="author-notes" rid="fn1">#</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Phillips</surname>
<given-names>A.J.L.</given-names>
</name>
<xref ref-type="aff" rid="A3">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Groenewald</surname>
<given-names>J.Z.</given-names>
</name>
<xref ref-type="aff" rid="A4">4</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Lombard</surname>
<given-names>L.</given-names>
</name>
<xref ref-type="aff" rid="A4">4</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Wingfield</surname>
<given-names>M.J.</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Postma</surname>
<given-names>A.</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Burgess</surname>
<given-names>T.</given-names>
</name>
<xref ref-type="aff" rid="A5">5</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Crous</surname>
<given-names>P.W.</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
<xref ref-type="aff" rid="A4">4</xref>
</contrib>
<aff id="A1"><label>1</label>
Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002, South Africa</aff>
<aff id="A2"><label>2</label>
USR3278-Criobe-CNRS-EPHE, Laboratoire d’Excellence “CORAIL”, Université de Perpignan-CBETM, 58 rue Paul Alduy, 66860 Perpignan Cedex, France</aff>
<aff id="A3"><label>3</label>
Centro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Portugal</aff>
<aff id="A4"><label>4</label>
CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</aff>
<aff id="A5"><label>5</label>
School of Biological Sciences and Biotechnology, Murdoch University, Perth, Australia</aff>
</contrib-group>
<author-notes><corresp id="cor1"><label>*</label>
<italic>Correspondence</italic>
: B. Slippers, <email>Bernard.Slippers@fabi.up.ac.za</email>
</corresp>
<fn id="fn1"><label>#</label>
<p>These authors contributed equally to this paper.</p>
</fn>
</author-notes>
<pub-date pub-type="ppub"><day>30</day>
<month>9</month>
<year>2013</year>
</pub-date>
<volume>76</volume>
<issue>1</issue>
<issue-title>Plant pathogenic and endophytic Botryosphaeriales known from culture</issue-title>
<fpage>31</fpage>
<lpage>49</lpage>
<permissions><copyright-statement>Copyright 2013 CBS-KNAW Fungal Biodiversity Centre</copyright-statement>
<copyright-year>2013</copyright-year>
<license license-type="creative-commons"><license-p>You are free to share - to copy, distribute and transmit the work, under the following conditions:</license-p>
<license-p><bold>Attribution:</bold>
You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work).</license-p>
<license-p><bold>Non-commercial:</bold>
You may not use this work for commercial purposes.</license-p>
<license-p><bold>No derivative works:</bold>
You may not alter, transform, or build upon this work.</license-p>
<license-p>For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at <uri xlink:type="simple" xlink:href="http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode">http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode</uri>
. Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights.</license-p>
</license>
</permissions>
<self-uri xlink:title="pdf" xlink:type="simple" xlink:href="31.pdf"></self-uri>
<abstract><p id="P6">The order <italic>Botryosphaeriales</italic>
represents several ecologically diverse fungal families that are commonly isolated as endophytes or pathogens from various woody hosts. The taxonomy of members of this order has been strongly influenced by sequence-based phylogenetics, and the abandonment of dual nomenclature. In this study, the phylogenetic relationships of the genera known from culture are evaluated based on DNA sequence data for six loci (SSU, LSU, ITS, EF1, BT, mtSSU). The results make it possible to recognise a total of six families. Other than the <italic>Botryosphaeriaceae</italic>
(17 genera), <italic>Phyllostictaceae</italic>
(<italic>Phyllosticta</italic>
) and <italic>Planistromellaceae</italic>
(<italic>Kellermania</italic>
), newly introduced families include <italic>Aplosporellaceae</italic>
(<italic>Aplosporella</italic>
and <italic>Bagnisiella</italic>
), <italic>Melanopsaceae</italic>
(<italic>Melanops</italic>
), and <italic>Saccharataceae</italic>
(<italic>Saccharata</italic>
). Furthermore, the evolution of morphological characters in the <italic>Botryosphaeriaceae</italic>
were investigated via analysis of phylogeny-trait association. None of the traits presented a significant phylogenetic signal, suggesting that conidial and ascospore pigmentation, septation and appendages evolved more than once in the family. Molecular clock dating on radiations within the <italic>Botryosphaeriales</italic>
based on estimated mutation rates of the rDNA SSU locus, suggests that the order originated in the Cretaceous period around 103 (45-188) mya, with most of the diversification in the Tertiary period. This coincides with important periods of radiation and spread of the main group of plants that these fungi infect, namely woody Angiosperms. The resulting host-associations and distribution could have influenced the diversification of these fungi.</p>
<sec id="S1"><title>Taxonomic novelties:</title>
<p id="P7"><bold>New families</bold>
- <italic>Aplosporellaceae</italic>
Slippers, Boissin & Crous, <italic>Melanopsaceae</italic>
Phillips, Slippers, Boissin & Crous, <italic>Saccharataceae</italic>
Slippers, Boissin & Crous.</p>
</sec>
</abstract>
<kwd-group><title>Key words:</title>
<kwd><italic>Aplosporellaceae</italic>
</kwd>
<kwd><italic>Melanopsaceae</italic>
</kwd>
<kwd>molecular dating</kwd>
<kwd><italic>Phyllostictaceae</italic>
</kwd>
<kwd><italic>Planistromellaceae</italic>
</kwd>
<kwd><italic>Saccharataceae</italic>
</kwd>
<kwd>systematics</kwd>
</kwd-group>
</article-meta>
</front>
</pmc>
</record>
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