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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Molecular epidemiology of Rabbit Haemorrhagic Disease Virus (RHDV) in Australia: when one became many</title><author><name sortKey="Kovaliski, John" sort="Kovaliski, John" uniqKey="Kovaliski J" first="John" last="Kovaliski">John Kovaliski</name><affiliation><nlm:aff id="A1">NRM Biosecurity, Biosecurity South Australia, PO Box 1671, Adelaide 5001, Australia</nlm:aff></affiliation><affiliation><nlm:aff id="A2">Invasive Animals Cooperative Research Centre, University of Canberra, Canberra, ACT, 2601, Australia</nlm:aff></affiliation></author><author><name sortKey="Sinclair, Ron" sort="Sinclair, Ron" uniqKey="Sinclair R" first="Ron" last="Sinclair">Ron Sinclair</name><affiliation><nlm:aff id="A1">NRM Biosecurity, Biosecurity South Australia, PO Box 1671, Adelaide 5001, Australia</nlm:aff></affiliation><affiliation><nlm:aff id="A2">Invasive Animals Cooperative Research Centre, University of Canberra, Canberra, ACT, 2601, Australia</nlm:aff></affiliation></author><author><name sortKey="Mutze, Greg" sort="Mutze, Greg" uniqKey="Mutze G" first="Greg" last="Mutze">Greg Mutze</name><affiliation><nlm:aff id="A1">NRM Biosecurity, Biosecurity South Australia, PO Box 1671, Adelaide 5001, Australia</nlm:aff></affiliation><affiliation><nlm:aff id="A2">Invasive Animals Cooperative Research Centre, University of Canberra, Canberra, ACT, 2601, Australia</nlm:aff></affiliation></author><author><name sortKey="Peacock, David" sort="Peacock, David" uniqKey="Peacock D" first="David" last="Peacock">David Peacock</name><affiliation><nlm:aff id="A1">NRM Biosecurity, Biosecurity South Australia, PO Box 1671, Adelaide 5001, Australia</nlm:aff></affiliation><affiliation><nlm:aff id="A2">Invasive Animals Cooperative Research Centre, University of Canberra, Canberra, ACT, 2601, Australia</nlm:aff></affiliation></author><author><name sortKey="Strive, Tanja" sort="Strive, Tanja" uniqKey="Strive T" first="Tanja" last="Strive">Tanja Strive</name><affiliation><nlm:aff id="A2">Invasive Animals Cooperative Research Centre, University of Canberra, Canberra, ACT, 2601, Australia</nlm:aff></affiliation><affiliation><nlm:aff id="A3">CSIRO Ecosystem Sciences, Black Mountain Laboratories, Clunies Ross Street, Black Mountain, ACT 2601, Australia</nlm:aff></affiliation></author><author><name sortKey="Abrantes, Joana" sort="Abrantes, Joana" uniqKey="Abrantes J" first="Joana" last="Abrantes">Joana Abrantes</name><affiliation><nlm:aff id="A4">CIBIO/UP Centro de Investigação em Biodiversidade e Recursos Genéticos / Universidade do Porto, InBio, Laboratório Associado, Campus Agrário de Vairão, R. Padre Armando Quintas, 4485-661 Vairão, Portugal</nlm:aff></affiliation><affiliation><nlm:aff id="A5">INSERM, U892, Université de Nantes, Nantes, France</nlm:aff></affiliation></author><author><name sortKey="Esteves, Pedro J" sort="Esteves, Pedro J" uniqKey="Esteves P" first="Pedro J." last="Esteves">Pedro J. Esteves</name><affiliation><nlm:aff id="A5">INSERM, U892, Université de Nantes, Nantes, France</nlm:aff></affiliation><affiliation><nlm:aff id="A6">CITS, Centro de Investigação em Tecnologias da Saúde, IPSN, CESPU, Gandra, Portugal</nlm:aff></affiliation></author><author><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C." last="Holmes">Edward C. Holmes</name><affiliation><nlm:aff id="A7">Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Biological Sciences and Sydney Medical School, The University of Sydney, Sydney, NSW 2006, Australia</nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24251353</idno><idno type="pmc">4595043</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4595043</idno><idno type="RBID">PMC:4595043</idno><idno type="doi">10.1111/mec.12596</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">002107</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">002107</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Molecular epidemiology of Rabbit Haemorrhagic Disease Virus (RHDV) in Australia: when one became many</title><author><name sortKey="Kovaliski, John" sort="Kovaliski, John" uniqKey="Kovaliski J" first="John" last="Kovaliski">John Kovaliski</name><affiliation><nlm:aff id="A1">NRM Biosecurity, Biosecurity South Australia, PO Box 1671, Adelaide 5001, Australia</nlm:aff></affiliation><affiliation><nlm:aff id="A2">Invasive Animals Cooperative Research Centre, University of Canberra, Canberra, ACT, 2601, Australia</nlm:aff></affiliation></author><author><name sortKey="Sinclair, Ron" sort="Sinclair, Ron" uniqKey="Sinclair R" first="Ron" last="Sinclair">Ron Sinclair</name><affiliation><nlm:aff id="A1">NRM Biosecurity, Biosecurity South Australia, PO Box 1671, Adelaide 5001, Australia</nlm:aff></affiliation><affiliation><nlm:aff id="A2">Invasive Animals Cooperative Research Centre, University of Canberra, Canberra, ACT, 2601, Australia</nlm:aff></affiliation></author><author><name sortKey="Mutze, Greg" sort="Mutze, Greg" uniqKey="Mutze G" first="Greg" last="Mutze">Greg Mutze</name><affiliation><nlm:aff id="A1">NRM Biosecurity, Biosecurity South Australia, PO Box 1671, Adelaide 5001, Australia</nlm:aff></affiliation><affiliation><nlm:aff id="A2">Invasive Animals Cooperative Research Centre, University of Canberra, Canberra, ACT, 2601, Australia</nlm:aff></affiliation></author><author><name sortKey="Peacock, David" sort="Peacock, David" uniqKey="Peacock D" first="David" last="Peacock">David Peacock</name><affiliation><nlm:aff id="A1">NRM Biosecurity, Biosecurity South Australia, PO Box 1671, Adelaide 5001, Australia</nlm:aff></affiliation><affiliation><nlm:aff id="A2">Invasive Animals Cooperative Research Centre, University of Canberra, Canberra, ACT, 2601, Australia</nlm:aff></affiliation></author><author><name sortKey="Strive, Tanja" sort="Strive, Tanja" uniqKey="Strive T" first="Tanja" last="Strive">Tanja Strive</name><affiliation><nlm:aff id="A2">Invasive Animals Cooperative Research Centre, University of Canberra, Canberra, ACT, 2601, Australia</nlm:aff></affiliation><affiliation><nlm:aff id="A3">CSIRO Ecosystem Sciences, Black Mountain Laboratories, Clunies Ross Street, Black Mountain, ACT 2601, Australia</nlm:aff></affiliation></author><author><name sortKey="Abrantes, Joana" sort="Abrantes, Joana" uniqKey="Abrantes J" first="Joana" last="Abrantes">Joana Abrantes</name><affiliation><nlm:aff id="A4">CIBIO/UP Centro de Investigação em Biodiversidade e Recursos Genéticos / Universidade do Porto, InBio, Laboratório Associado, Campus Agrário de Vairão, R. Padre Armando Quintas, 4485-661 Vairão, Portugal</nlm:aff></affiliation><affiliation><nlm:aff id="A5">INSERM, U892, Université de Nantes, Nantes, France</nlm:aff></affiliation></author><author><name sortKey="Esteves, Pedro J" sort="Esteves, Pedro J" uniqKey="Esteves P" first="Pedro J." last="Esteves">Pedro J. Esteves</name><affiliation><nlm:aff id="A5">INSERM, U892, Université de Nantes, Nantes, France</nlm:aff></affiliation><affiliation><nlm:aff id="A6">CITS, Centro de Investigação em Tecnologias da Saúde, IPSN, CESPU, Gandra, Portugal</nlm:aff></affiliation></author><author><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C." last="Holmes">Edward C. Holmes</name><affiliation><nlm:aff id="A7">Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Biological Sciences and Sydney Medical School, The University of Sydney, Sydney, NSW 2006, Australia</nlm:aff></affiliation></author></analytic><series><title level="j">Molecular ecology</title><idno type="ISSN">0962-1083</idno><idno type="eISSN">1365-294X</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="P1">Rabbit Haemorrhagic Disease Virus (RHDV) was introduced into Australia in 1995 as a biological control agent against the wild European rabbit (<italic>Oryctolagus cuniculus</italic>). We evaluated its evolution over a 16 year period (1995–2011) by examining 50 isolates collected throughout Australia, as well as the original inoculum strains. Phylogenetic analysis of capsid protein VP60 sequences of the Australian isolates, compared to those sampled globally, revealed that they form a monophyletic group with the inoculum strains (CAPM V-351 and RHDV351INOC). Strikingly, despite more than 3000 re-releases of RHDV351INOC since 1995, only a single viral lineage has sustained its transmission in the long-term, indicative of a major competitive advantage. In addition, we find evidence for widespread viral gene flow, in which multiple lineages entered individual geographic locations, resulting in a marked turnover of viral lineages with time, as well as a continual increase in viral genetic diversity. The rate of RHDV evolution recorded in Australia – 4.0 (3.3 – 4.7) × 10<sup>−3</sup> nucleotide substitutions per site per year – was higher than previously observed in RHDV, and evidence for adaptive evolution was obtained at two VP60 residues. Finally, more intensive study of a single rabbit population (Turretfield) in South Australia provided no evidence for viral persistence between outbreaks, with genetic diversity instead generated by continual strain importation.</p></div></front></TEI><pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<pmc-dir>properties manuscript</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-journal-id">9214478</journal-id><journal-id journal-id-type="pubmed-jr-id">2614</journal-id><journal-id journal-id-type="nlm-ta">Mol Ecol</journal-id><journal-id journal-id-type="iso-abbrev">Mol. Ecol.</journal-id><journal-title-group><journal-title>Molecular ecology</journal-title></journal-title-group><issn pub-type="ppub">0962-1083</issn><issn pub-type="epub">1365-294X</issn></journal-meta><article-meta><article-id pub-id-type="pmid">24251353</article-id><article-id pub-id-type="pmc">4595043</article-id><article-id pub-id-type="doi">10.1111/mec.12596</article-id><article-id pub-id-type="manuscript">NIHMS725974</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title>Molecular epidemiology of Rabbit Haemorrhagic Disease Virus (RHDV) in Australia: when one became many</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Kovaliski</surname><given-names>John</given-names></name><xref ref-type="aff" rid="A1">1</xref><xref ref-type="aff" rid="A2">2</xref></contrib><contrib contrib-type="author"><name><surname>Sinclair</surname><given-names>Ron</given-names></name><xref ref-type="aff" rid="A1">1</xref><xref ref-type="aff" rid="A2">2</xref></contrib><contrib contrib-type="author"><name><surname>Mutze</surname><given-names>Greg</given-names></name><xref ref-type="aff" rid="A1">1</xref><xref ref-type="aff" rid="A2">2</xref></contrib><contrib contrib-type="author"><name><surname>Peacock</surname><given-names>David</given-names></name><xref ref-type="aff" rid="A1">1</xref><xref ref-type="aff" rid="A2">2</xref></contrib><contrib contrib-type="author"><name><surname>Strive</surname><given-names>Tanja</given-names></name><xref ref-type="aff" rid="A2">2</xref><xref ref-type="aff" rid="A3">3</xref></contrib><contrib contrib-type="author"><name><surname>Abrantes</surname><given-names>Joana</given-names></name><xref ref-type="aff" rid="A4">4</xref><xref ref-type="aff" rid="A5">5</xref></contrib><contrib contrib-type="author"><name><surname>Esteves</surname><given-names>Pedro J.</given-names></name><xref ref-type="aff" rid="A5">5</xref><xref ref-type="aff" rid="A6">6</xref></contrib><contrib contrib-type="author"><name><surname>Holmes</surname><given-names>Edward C.</given-names></name><xref ref-type="aff" rid="A7">7</xref><xref ref-type="corresp" rid="cor1">*</xref></contrib></contrib-group><aff id="A1"><label>1</label>NRM Biosecurity, Biosecurity South Australia, PO Box 1671, Adelaide 5001, Australia</aff><aff id="A2"><label>2</label>Invasive Animals Cooperative Research Centre, University of Canberra, Canberra, ACT, 2601, Australia</aff><aff id="A3"><label>3</label>CSIRO Ecosystem Sciences, Black Mountain Laboratories, Clunies Ross Street, Black Mountain, ACT 2601, Australia</aff><aff id="A4"><label>4</label>CIBIO/UP Centro de Investigação em Biodiversidade e Recursos Genéticos / Universidade do Porto, InBio, Laboratório Associado, Campus Agrário de Vairão, R. Padre Armando Quintas, 4485-661 Vairão, Portugal</aff><aff id="A5"><label>5</label>INSERM, U892, Université de Nantes, Nantes, France</aff><aff id="A6"><label>6</label>CITS, Centro de Investigação em Tecnologias da Saúde, IPSN, CESPU, Gandra, Portugal</aff><aff id="A7"><label>7</label>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Biological Sciences and Sydney Medical School, The University of Sydney, Sydney, NSW 2006, Australia</aff><author-notes><corresp id="cor1"><label>*</label>Correspondence: Edward Holmes, Tel: +61 2 9351 5591; Fax: +61 2 9351 3890 <email>edward.holmes@sydney.edu.au</email></corresp></author-notes><pub-date pub-type="nihms-submitted"><day>29</day><month>9</month><year>2015</year></pub-date><pub-date pub-type="epub"><day>09</day><month>12</month><year>2013</year></pub-date><pub-date pub-type="ppub"><month>2</month><year>2014</year></pub-date><pub-date pub-type="pmc-release"><day>06</day><month>10</month><year>2015</year></pub-date><volume>23</volume><issue>2</issue><fpage>408</fpage><lpage>420</lpage><pmc-comment>elocation-id from pubmed: 10.1111/mec.12596</pmc-comment>
<abstract><p id="P1">Rabbit Haemorrhagic Disease Virus (RHDV) was introduced into Australia in 1995 as a biological control agent against the wild European rabbit (<italic>Oryctolagus cuniculus</italic>). We evaluated its evolution over a 16 year period (1995–2011) by examining 50 isolates collected throughout Australia, as well as the original inoculum strains. Phylogenetic analysis of capsid protein VP60 sequences of the Australian isolates, compared to those sampled globally, revealed that they form a monophyletic group with the inoculum strains (CAPM V-351 and RHDV351INOC). Strikingly, despite more than 3000 re-releases of RHDV351INOC since 1995, only a single viral lineage has sustained its transmission in the long-term, indicative of a major competitive advantage. In addition, we find evidence for widespread viral gene flow, in which multiple lineages entered individual geographic locations, resulting in a marked turnover of viral lineages with time, as well as a continual increase in viral genetic diversity. The rate of RHDV evolution recorded in Australia – 4.0 (3.3 – 4.7) × 10<sup>−3</sup> nucleotide substitutions per site per year – was higher than previously observed in RHDV, and evidence for adaptive evolution was obtained at two VP60 residues. Finally, more intensive study of a single rabbit population (Turretfield) in South Australia provided no evidence for viral persistence between outbreaks, with genetic diversity instead generated by continual strain importation.</p></abstract><kwd-group><kwd>Rabbit Haemorrhagic Disease Virus</kwd><kwd>evolution</kwd><kwd>epidemiology</kwd><kwd>phylogeny</kwd><kwd>biocontrol</kwd><kwd>European rabbit</kwd></kwd-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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