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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Draft Genome of Australian Environmental Strain WM 09.24 of the Opportunistic Human Pathogen <named-content content-type="genus-species">Scedosporium aurantiacum</named-content></title><author><name sortKey="Perez Bercoff, A" sort="Perez Bercoff, A" uniqKey="Perez Bercoff " first=" A" last="Pérez-Bercoff"> A Pérez-Bercoff</name><affiliation><nlm:aff id="aff1"><addr-line>Centre for Infectious Diseases and Microbiology, Molecular Mycology Research Laboratory, Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, University of Sydney, Westmead Millennium Institute, Sydney, NSW, Australia</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff2"><addr-line>John Curtin School of Medical Research, Australian National University, Arts and Culture Trust, Canberra, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Papanicolaou, Alexie" sort="Papanicolaou, Alexie" uniqKey="Papanicolaou A" first="Alexie" last="Papanicolaou">Alexie Papanicolaou</name><affiliation><nlm:aff id="aff3"><addr-line>CSIRO Land and Water Flagship, Black Mountain Laboratories, CSIRO, Arts and Culture Trust, Canberra, Australia</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff4"><addr-line>Hawkesbury Institute for the Environment, University of Western Sydney, Arts and Culture Trust, Penrith, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Ramsperger, Marc" sort="Ramsperger, Marc" uniqKey="Ramsperger M" first="Marc" last="Ramsperger">Marc Ramsperger</name><affiliation><nlm:aff id="aff1"><addr-line>Centre for Infectious Diseases and Microbiology, Molecular Mycology Research Laboratory, Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, University of Sydney, Westmead Millennium Institute, Sydney, NSW, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Kaur, Jashanpreet" sort="Kaur, Jashanpreet" uniqKey="Kaur J" first="Jashanpreet" last="Kaur">Jashanpreet Kaur</name><affiliation><nlm:aff id="aff5"><addr-line>Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Patel, Hardip R" sort="Patel, Hardip R" uniqKey="Patel H" first="Hardip R." last="Patel">Hardip R. Patel</name><affiliation><nlm:aff id="aff2"><addr-line>John Curtin School of Medical Research, Australian National University, Arts and Culture Trust, Canberra, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Harun, Azian" sort="Harun, Azian" uniqKey="Harun A" first="Azian" last="Harun">Azian Harun</name><affiliation><nlm:aff id="aff1"><addr-line>Centre for Infectious Diseases and Microbiology, Molecular Mycology Research Laboratory, Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, University of Sydney, Westmead Millennium Institute, Sydney, NSW, Australia</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff6"><addr-line>School of Medical Sciences, Universiti Sains Malaysia, Kota Bharu, Kelantan, Malaysia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Duan, Shu Yao" sort="Duan, Shu Yao" uniqKey="Duan S" first="Shu Yao" last="Duan">Shu Yao Duan</name><affiliation><nlm:aff id="aff1"><addr-line>Centre for Infectious Diseases and Microbiology, Molecular Mycology Research Laboratory, Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, University of Sydney, Westmead Millennium Institute, Sydney, NSW, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Elbourne, Liam" sort="Elbourne, Liam" uniqKey="Elbourne L" first="Liam" last="Elbourne">Liam Elbourne</name><affiliation><nlm:aff id="aff4"><addr-line>Hawkesbury Institute for the Environment, University of Western Sydney, Arts and Culture Trust, Penrith, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Bouchara, Jean Philippe" sort="Bouchara, Jean Philippe" uniqKey="Bouchara J" first="Jean-Philippe" last="Bouchara">Jean-Philippe Bouchara</name><affiliation><nlm:aff id="aff7"><addr-line>L’UNAM Université, Université d’Angers, Groupe d'Etude des Interactions Hôte-Pathogène, Angers, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff8"><addr-line>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Angers, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Paulsen, Ian T" sort="Paulsen, Ian T" uniqKey="Paulsen I" first="Ian T." last="Paulsen">Ian T. Paulsen</name><affiliation><nlm:aff id="aff4"><addr-line>Hawkesbury Institute for the Environment, University of Western Sydney, Arts and Culture Trust, Penrith, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Nevalainen, Helena" sort="Nevalainen, Helena" uniqKey="Nevalainen H" first="Helena" last="Nevalainen">Helena Nevalainen</name><affiliation><nlm:aff id="aff4"><addr-line>Hawkesbury Institute for the Environment, University of Western Sydney, Arts and Culture Trust, Penrith, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Meyer, Wieland" sort="Meyer, Wieland" uniqKey="Meyer W" first="Wieland" last="Meyer">Wieland Meyer</name><affiliation><nlm:aff id="aff1"><addr-line>Centre for Infectious Diseases and Microbiology, Molecular Mycology Research Laboratory, Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, University of Sydney, Westmead Millennium Institute, Sydney, NSW, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Huttley, Gavin A" sort="Huttley, Gavin A" uniqKey="Huttley G" first="Gavin A." last="Huttley">Gavin A. Huttley</name><affiliation><nlm:aff id="aff2"><addr-line>John Curtin School of Medical Research, Australian National University, Arts and Culture Trust, Canberra, Australia</addr-line></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25676755</idno><idno type="pmc">4333655</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333655</idno><idno type="RBID">PMC:4333655</idno><idno type="doi">10.1128/genomeA.01526-14</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">001250</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001250</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Draft Genome of Australian Environmental Strain WM 09.24 of the Opportunistic Human Pathogen <named-content content-type="genus-species">Scedosporium aurantiacum</named-content></title><author><name sortKey="Perez Bercoff, A" sort="Perez Bercoff, A" uniqKey="Perez Bercoff " first=" A" last="Pérez-Bercoff"> A Pérez-Bercoff</name><affiliation><nlm:aff id="aff1"><addr-line>Centre for Infectious Diseases and Microbiology, Molecular Mycology Research Laboratory, Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, University of Sydney, Westmead Millennium Institute, Sydney, NSW, Australia</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff2"><addr-line>John Curtin School of Medical Research, Australian National University, Arts and Culture Trust, Canberra, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Papanicolaou, Alexie" sort="Papanicolaou, Alexie" uniqKey="Papanicolaou A" first="Alexie" last="Papanicolaou">Alexie Papanicolaou</name><affiliation><nlm:aff id="aff3"><addr-line>CSIRO Land and Water Flagship, Black Mountain Laboratories, CSIRO, Arts and Culture Trust, Canberra, Australia</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff4"><addr-line>Hawkesbury Institute for the Environment, University of Western Sydney, Arts and Culture Trust, Penrith, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Ramsperger, Marc" sort="Ramsperger, Marc" uniqKey="Ramsperger M" first="Marc" last="Ramsperger">Marc Ramsperger</name><affiliation><nlm:aff id="aff1"><addr-line>Centre for Infectious Diseases and Microbiology, Molecular Mycology Research Laboratory, Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, University of Sydney, Westmead Millennium Institute, Sydney, NSW, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Kaur, Jashanpreet" sort="Kaur, Jashanpreet" uniqKey="Kaur J" first="Jashanpreet" last="Kaur">Jashanpreet Kaur</name><affiliation><nlm:aff id="aff5"><addr-line>Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Patel, Hardip R" sort="Patel, Hardip R" uniqKey="Patel H" first="Hardip R." last="Patel">Hardip R. Patel</name><affiliation><nlm:aff id="aff2"><addr-line>John Curtin School of Medical Research, Australian National University, Arts and Culture Trust, Canberra, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Harun, Azian" sort="Harun, Azian" uniqKey="Harun A" first="Azian" last="Harun">Azian Harun</name><affiliation><nlm:aff id="aff1"><addr-line>Centre for Infectious Diseases and Microbiology, Molecular Mycology Research Laboratory, Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, University of Sydney, Westmead Millennium Institute, Sydney, NSW, Australia</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff6"><addr-line>School of Medical Sciences, Universiti Sains Malaysia, Kota Bharu, Kelantan, Malaysia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Duan, Shu Yao" sort="Duan, Shu Yao" uniqKey="Duan S" first="Shu Yao" last="Duan">Shu Yao Duan</name><affiliation><nlm:aff id="aff1"><addr-line>Centre for Infectious Diseases and Microbiology, Molecular Mycology Research Laboratory, Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, University of Sydney, Westmead Millennium Institute, Sydney, NSW, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Elbourne, Liam" sort="Elbourne, Liam" uniqKey="Elbourne L" first="Liam" last="Elbourne">Liam Elbourne</name><affiliation><nlm:aff id="aff4"><addr-line>Hawkesbury Institute for the Environment, University of Western Sydney, Arts and Culture Trust, Penrith, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Bouchara, Jean Philippe" sort="Bouchara, Jean Philippe" uniqKey="Bouchara J" first="Jean-Philippe" last="Bouchara">Jean-Philippe Bouchara</name><affiliation><nlm:aff id="aff7"><addr-line>L’UNAM Université, Université d’Angers, Groupe d'Etude des Interactions Hôte-Pathogène, Angers, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff8"><addr-line>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Angers, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Paulsen, Ian T" sort="Paulsen, Ian T" uniqKey="Paulsen I" first="Ian T." last="Paulsen">Ian T. Paulsen</name><affiliation><nlm:aff id="aff4"><addr-line>Hawkesbury Institute for the Environment, University of Western Sydney, Arts and Culture Trust, Penrith, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Nevalainen, Helena" sort="Nevalainen, Helena" uniqKey="Nevalainen H" first="Helena" last="Nevalainen">Helena Nevalainen</name><affiliation><nlm:aff id="aff4"><addr-line>Hawkesbury Institute for the Environment, University of Western Sydney, Arts and Culture Trust, Penrith, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Meyer, Wieland" sort="Meyer, Wieland" uniqKey="Meyer W" first="Wieland" last="Meyer">Wieland Meyer</name><affiliation><nlm:aff id="aff1"><addr-line>Centre for Infectious Diseases and Microbiology, Molecular Mycology Research Laboratory, Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, University of Sydney, Westmead Millennium Institute, Sydney, NSW, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Huttley, Gavin A" sort="Huttley, Gavin A" uniqKey="Huttley G" first="Gavin A." last="Huttley">Gavin A. Huttley</name><affiliation><nlm:aff id="aff2"><addr-line>John Curtin School of Medical Research, Australian National University, Arts and Culture Trust, Canberra, Australia</addr-line></nlm:aff></affiliation></author></analytic><series><title level="j">Genome Announcements</title><idno type="eISSN">2169-8287</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>We report here the first genome assembly and annotation of the human-pathogenic fungus <named-content content-type="genus-species">Scedosporium aurantiacum</named-content>, with a predicted 10,525 genes, and 11,661 transcripts. The strain WM 09.24 was isolated from the environment at Circular Quay, Sydney, New South Wales, Australia.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Kaltseis, J" uniqKey="Kaltseis J">J Kaltseis</name></author><author><name sortKey="Rainer, J" uniqKey="Rainer J">J Rainer</name></author><author><name sortKey="De Hoog, Gs" uniqKey="De Hoog G">GS De Hoog</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Heath, Ch" uniqKey="Heath C">CH Heath</name></author><author><name sortKey="Slavin, Ma" uniqKey="Slavin M">MA Slavin</name></author><author><name sortKey="Sorrell, Tc" uniqKey="Sorrell T">TC Sorrell</name></author><author><name sortKey="Handke, R" uniqKey="Handke R">R Handke</name></author><author><name sortKey="Harun, A" uniqKey="Harun A">A Harun</name></author><author><name sortKey="Phillips, M" uniqKey="Phillips M">M Phillips</name></author><author><name sortKey="Nguyen, Q" uniqKey="Nguyen 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Genome Announc</journal-id><journal-id journal-id-type="iso-abbrev">Genome Announc</journal-id><journal-id journal-id-type="hwp">ga</journal-id><journal-id journal-id-type="pmc">ga</journal-id><journal-id journal-id-type="publisher-id">GA</journal-id><journal-title-group><journal-title>Genome Announcements</journal-title></journal-title-group><issn pub-type="epub">2169-8287</issn><publisher><publisher-name>American Society for Microbiology</publisher-name><publisher-loc>1752 N St., N.W., Washington, DC</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">25676755</article-id><article-id pub-id-type="pmc">4333655</article-id><article-id pub-id-type="publisher-id">genomeA01526-14</article-id><article-id pub-id-type="doi">10.1128/genomeA.01526-14</article-id><article-categories><subj-group subj-group-type="heading"><subject>Eukaryotes</subject></subj-group></article-categories><title-group><article-title>Draft Genome of Australian Environmental Strain WM 09.24 of the Opportunistic Human Pathogen <named-content content-type="genus-species">Scedosporium aurantiacum</named-content></article-title><alt-title alt-title-type="short-authors">Pérez-Bercoff et al.</alt-title><alt-title alt-title-type="running-head">Genome Announcement</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Pérez-Bercoff</surname><given-names>Åsa</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref><xref ref-type="aff" rid="aff2"><sup>b</sup></xref></contrib><contrib contrib-type="author"><name><surname>Papanicolaou</surname><given-names>Alexie</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref><xref ref-type="aff" rid="aff4"><sup>d</sup></xref></contrib><contrib contrib-type="author"><name><surname>Ramsperger</surname><given-names>Marc</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Kaur</surname><given-names>Jashanpreet</given-names></name><xref ref-type="aff" rid="aff5"><sup>e</sup></xref></contrib><contrib contrib-type="author"><name><surname>Patel</surname><given-names>Hardip R.</given-names></name><xref ref-type="aff" rid="aff2"><sup>b</sup></xref></contrib><contrib contrib-type="author"><name><surname>Harun</surname><given-names>Azian</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref><xref ref-type="aff" rid="aff6"><sup>f</sup></xref></contrib><contrib contrib-type="author"><name><surname>Duan</surname><given-names>Shu Yao</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Elbourne</surname><given-names>Liam</given-names></name><xref ref-type="aff" rid="aff4"><sup>d</sup></xref></contrib><contrib contrib-type="author"><name><surname>Bouchara</surname><given-names>Jean-Philippe</given-names></name><xref ref-type="aff" rid="aff7"><sup>g</sup></xref><xref ref-type="aff" rid="aff8"><sup>h</sup></xref></contrib><contrib contrib-type="author"><name><surname>Paulsen</surname><given-names>Ian T.</given-names></name><xref ref-type="aff" rid="aff4"><sup>d</sup></xref></contrib><contrib contrib-type="author"><name><surname>Nevalainen</surname><given-names>Helena</given-names></name><xref ref-type="aff" rid="aff4"><sup>d</sup></xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Meyer</surname><given-names>Wieland</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Huttley</surname><given-names>Gavin A.</given-names></name><xref ref-type="aff" rid="aff2"><sup>b</sup></xref></contrib><aff id="aff1"><label>a</label><addr-line>Centre for Infectious Diseases and Microbiology, Molecular Mycology Research Laboratory, Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, University of Sydney, Westmead Millennium Institute, Sydney, NSW, Australia</addr-line></aff><aff id="aff2"><label>b</label><addr-line>John Curtin School of Medical Research, Australian National University, Arts and Culture Trust, Canberra, Australia</addr-line></aff><aff id="aff3"><label>c</label><addr-line>CSIRO Land and Water Flagship, Black Mountain Laboratories, CSIRO, Arts and Culture Trust, Canberra, Australia</addr-line></aff><aff id="aff4"><label>d</label><addr-line>Hawkesbury Institute for the Environment, University of Western Sydney, Arts and Culture Trust, Penrith, Australia</addr-line></aff><aff id="aff5"><label>e</label><addr-line>Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, Australia</addr-line></aff><aff id="aff6"><label>f</label><addr-line>School of Medical Sciences, Universiti Sains Malaysia, Kota Bharu, Kelantan, Malaysia</addr-line></aff><aff id="aff7"><label>g</label><addr-line>L’UNAM Université, Université d’Angers, Groupe d'Etude des Interactions Hôte-Pathogène, Angers, France</addr-line></aff><aff id="aff8"><label>h</label><addr-line>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Angers, France</addr-line></aff></contrib-group><author-notes><corresp id="cor1">Address correspondence to Wieland Meyer, <email>wieland.meyer@sydney.edu.au</email>, or Gavin A. Huttley, <email>gavin.huttley@anu.edu.au</email>.</corresp></author-notes><pub-date pub-type="epub"><day>12</day><month>2</month><year>2015</year></pub-date><pub-date pub-type="collection"><season>Jan-Feb</season><year>2015</year></pub-date><volume>3</volume><issue>1</issue><elocation-id>e01526-14</elocation-id><history><date date-type="received"><day>19</day><month>12</month><year>2014</year></date><date date-type="accepted"><day>5</day><month>1</month><year>2015</year></date></history><permissions><copyright-statement>Copyright © 2015 Pérez-Bercoff et al.</copyright-statement><copyright-year>2015</copyright-year><copyright-holder>Pérez-Bercoff et al.</copyright-holder><license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0/"><license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">Creative Commons Attribution 3.0 Unported license</ext-link>.</license-p></license></permissions><self-uri content-type="pdf" xlink:href="jga001152117001.pdf"></self-uri><abstract><p>We report here the first genome assembly and annotation of the human-pathogenic fungus <named-content content-type="genus-species">Scedosporium aurantiacum</named-content>, with a predicted 10,525 genes, and 11,661 transcripts. The strain WM 09.24 was isolated from the environment at Circular Quay, Sydney, New South Wales, Australia.</p></abstract><counts><fig-count count="0"></fig-count><table-count count="0"></table-count><equation-count count="0"></equation-count><ref-count count="12"></ref-count><page-count count="2"></page-count><word-count count="1454"></word-count></counts><custom-meta-group><custom-meta><meta-name>cover-date</meta-name><meta-value>January/February 2015</meta-value></custom-meta></custom-meta-group></article-meta></front><body><sec><title>GENOME ANNOUNCEMENT</title><p><named-content content-type="genus-species">Scedosporium aurantiacum</named-content> is a hyphomycetous filamentous fungus found in various environments such as soil, sewage and polluted waters (<xref rid="B1" ref-type="bibr">1</xref>). It is an emerging opportunistic pathogen capable of causing a range of infections that are especially abundant in Australia (<xref rid="B2" ref-type="bibr">2</xref>). To enable the genetic characterization of the virulence and high antifungal resistance potential of this species (<xref rid="B3" ref-type="bibr">3</xref>), the genome of the environmental, highly virulent <named-content content-type="genus-species">S. aurantiacum</named-content> strain WM 09.24, collected from Circular Quay, Sydney, NSW, Australia, in 2009, was sequenced (A. Harun and W. Meyer, unpublished data). The isolate selection was based on a global multilocus sequence typing (MLST) study (A. Harun and W. Meyer, unpublished data) and determination of its virulence using the <named-content content-type="genus-species">Galleria mellonella</named-content> model (S. Duan and W. Meyer, unpublished data).</p><p>Genomic DNA was sequenced (paired-end [PE] reads) on Illumina HiSeq 2000 at the Ramaciotti Centre for Genomics, University of New South Wales (UNSW), Sydney, NSW, Australia. Trimmomatic (version 0.27) (<xref rid="B4" ref-type="bibr">4</xref>) was used to clip off adapters and trim the reads prior to assembly with SPAdes (version 3.1.1) (<xref rid="B5" ref-type="bibr">5</xref>). After correction with REAPR (version 1.0.16) (<xref rid="B6" ref-type="bibr">6</xref>), and discarding of scaffolds <200 nucleotides (nt), the assembly consisted of 1,584 scaffolds (202 nt to 380,183 nt in length) and had a total genome size of 39,890,731 nt with 49.20% GC content. The assembly’s <italic>N</italic><sub>50</sub> was 78,269 nt and <italic>N</italic><sub>90</sub> was 16,521 nt and was calculated to have an average coverage of 162× over all 1,584 contigs. The CEGMA pipeline (<xref rid="B7" ref-type="bibr">7</xref>) indicated an assembly completeness of 93.15%. RepeatMasker version open-4.0.3 (<ext-link ext-link-type="uri" xlink:href="http://www.repeatmasker.org">http://www.repeatmasker.org</ext-link>) was used to identify repeats in the genome assembly and 1.96% of the bases were masked.</p><p>To facilitate genome annotation, RNA-seq was obtained from <named-content content-type="genus-species">S. aurantiacum</named-content> strain WM 09.24 grown in different media at 25°C and 37°C, pertaining to environmental and human host growth conditions, respectively, as follows: (i) water medium for starvation, (ii) potato dextrose (PD) to promote good general growth, and (iii) artificial sputum medium (ASM) to simulate growth conditions in an infected lung of a cystic fibrosis (CF) patient (<xref rid="B8" ref-type="bibr">8</xref>; M. Ramsperger and W. Meyer, unpublished data). Single-end (SE) reads of 100 bp were generated using the Illumina HiSeq 2500 at the Biomolecular Research Facility (BRF) at the John Curtin School for Medical Research (JCSMR), Australian National University (ANU), Canberra, ACT, Australia. Genome annotation was performed using the JAMg pipeline (<xref rid="B9" ref-type="bibr">9</xref>) and GMAP (version 2014-12-06) (<xref rid="B10" ref-type="bibr">10</xref>). We predicted 10,525 gene models and 11,661 transcripts for the genome assembly of <named-content content-type="genus-species">S. aurantiacum</named-content> strain WM 09.24. The number of inferred genes in <named-content content-type="genus-species">S. aurantiacum</named-content> is comparable to <named-content content-type="genus-species">Trichoderma virens</named-content>, which has 12,400 genes (<xref rid="B11" ref-type="bibr">11</xref>), and to the recently published genome of <named-content content-type="genus-species">Scedosporium apiospermum</named-content> strain IHEM 14462, which was found to have 10,919 coding sequences (CDSs) (<xref rid="B12" ref-type="bibr">12</xref>).</p><p>The herein-reported high-quality draft assembly of the environmental and highly virulent <named-content content-type="genus-species">S. aurantiacum</named-content> strain WM 09.24, together with the recently published genome of <named-content content-type="genus-species">S. apiospermum</named-content> strain IHEM 14462 (<xref rid="B12" ref-type="bibr">12</xref>) will provide fundamental genomics resources to study the genetic basis of virulence and antifungal resistance in this genus.</p><sec id="s1"><title>Nucleotide sequence accession numbers.</title><p>This whole genome shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession number <ext-link ext-link-type="NCBI:nucleotide" xlink:href="JUDQ00000000">JUDQ00000000</ext-link>. The version described in this paper is the first version, JUDQ01000000.</p></sec></sec></body><back><fn-group><fn fn-type="other"><p><bold>Citation</bold> Pérez-Bercoff Å, Papanicolaou A, Ramsperger M, Kaur J, Patel HR, Harun A, Duan SY, Elbourne L, Bouchara J-P, Paulsen IT, Nevalainen H, Meyer W, Huttley GA. 2015. Draft genome of Australian environmental strain WM 09.24 of the opportunistic human pathogen <named-content content-type="genus-species">Scedosporium aurantiacum</named-content>. Genome Announc 3(1):e01526-14. doi:10.1128/genomeA.01526-14.</p></fn></fn-group><ack><title>ACKNOWLEDGMENTS</title><p>We are grateful to the staff at the Genome Discovery Unit (GDU) at the Biomolecular Resource Facility (BRF) at the John Curtin School of Medical Research (JCSMR) at the Australian National University (ANU) for software installations and computer cluster provisions on which the analyses were performed. We thank the staff at the BRF for carrying out the RNA sequencing. This work was supported by an ARC Super Science Fellowship FS110200026 (to I.T.P. and H.N.), and an NH&MRC grant APP1031943 (to W.M., G.A.H., and H.N.). 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