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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome Sequences of Four <italic>Staphylococcus capitis</italic> NRCS-A Isolates from Geographically Distant Neonatal Intensive Care Units</title><author><name sortKey="Lemriss, H" sort="Lemriss, H" uniqKey="Lemriss H" first="H." last="Lemriss">H. Lemriss</name><affiliation><nlm:aff id="aff1"><addr-line>Biotechnology Laboratory (Medbiotech), Medical and Pharmacy School, University Mohammed V de Rabat, Rabat, Morocco</addr-line></nlm:aff></affiliation></author><author><name sortKey="Lemriss, S" sort="Lemriss, S" uniqKey="Lemriss S" first="S." last="Lemriss">S. Lemriss</name><affiliation><nlm:aff id="aff2"><addr-line>Department of Biosecurity PCL3, Laboratory of Research and Medical Analysis of the Fraternal of Gendarmerie Royale, Rabat, Morocco</addr-line></nlm:aff></affiliation></author><author><name sortKey="Martins Simoes, P" sort="Martins Simoes, P" uniqKey="Martins Simoes P" first="P." last="Martins-Simoes">P. Martins-Simoes</name><affiliation><nlm:aff id="aff3"><addr-line>International Centre for Research in Infectious diseases, INSERM, University of Lyon, Lyon, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff4"><addr-line>Department of Clinical Microbiology, Northern Hospital Group, Hospices Civils de Lyon, Lyon, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff5"><addr-line>National Reference Center for Staphylococci, Hospices Civils de Lyon, Lyon, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Butin, M" sort="Butin, M" uniqKey="Butin M" first="M." last="Butin">M. Butin</name><affiliation><nlm:aff id="aff3"><addr-line>International Centre for Research in Infectious diseases, INSERM, University of Lyon, Lyon, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Lahlou, L" sort="Lahlou, L" uniqKey="Lahlou L" first="L." last="Lahlou">L. Lahlou</name><affiliation><nlm:aff id="aff1"><addr-line>Biotechnology Laboratory (Medbiotech), Medical and Pharmacy School, University Mohammed V de Rabat, Rabat, Morocco</addr-line></nlm:aff></affiliation></author><author><name sortKey="Rasigade, J P" sort="Rasigade, J P" uniqKey="Rasigade J" first="J.-P." last="Rasigade">J.-P. Rasigade</name><affiliation><nlm:aff id="aff3"><addr-line>International Centre for Research in Infectious diseases, INSERM, University of Lyon, Lyon, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff4"><addr-line>Department of Clinical Microbiology, Northern Hospital Group, Hospices Civils de Lyon, Lyon, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Kearns, A" sort="Kearns, A" uniqKey="Kearns A" first="A." last="Kearns">A. Kearns</name><affiliation><nlm:aff id="aff6"><addr-line>Public Health England, Colindale, London, United Kingdom</addr-line></nlm:aff></affiliation></author><author><name sortKey="Denis, O" sort="Denis, O" uniqKey="Denis O" first="O." last="Denis">O. Denis</name><affiliation><nlm:aff id="aff7"><addr-line>Erasme Hospital, Université Libre de Bruxelles, Brussels, Belgium</addr-line></nlm:aff></affiliation></author><author><name sortKey="Deighton, M" sort="Deighton, M" uniqKey="Deighton M" first="M." last="Deighton">M. Deighton</name><affiliation><nlm:aff id="aff8"><addr-line>RMIT University, Bundoora, Victoria, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Ibrahimi, A" sort="Ibrahimi, A" uniqKey="Ibrahimi A" first="A." last="Ibrahimi">A. Ibrahimi</name><affiliation><nlm:aff id="aff1"><addr-line>Biotechnology Laboratory (Medbiotech), Medical and Pharmacy School, University Mohammed V de Rabat, Rabat, Morocco</addr-line></nlm:aff></affiliation></author><author><name sortKey="Laurent, F" sort="Laurent, F" uniqKey="Laurent F" first="F." last="Laurent">F. Laurent</name><affiliation><nlm:aff id="aff3"><addr-line>International Centre for Research in Infectious diseases, INSERM, University of Lyon, Lyon, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff4"><addr-line>Department of Clinical Microbiology, Northern Hospital Group, Hospices Civils de Lyon, Lyon, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff5"><addr-line>National Reference Center for Staphylococci, Hospices Civils de Lyon, Lyon, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="El Kabbaj, S" sort="El Kabbaj, S" uniqKey="El Kabbaj S" first="S." last="El Kabbaj">S. El Kabbaj</name><affiliation><nlm:aff id="aff2"><addr-line>Department of Biosecurity PCL3, Laboratory of Research and Medical Analysis of the Fraternal of Gendarmerie Royale, Rabat, Morocco</addr-line></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26251481</idno><idno type="pmc">4541270</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4541270</idno><idno type="RBID">PMC:4541270</idno><idno type="doi">10.1128/genomeA.00501-15</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">001251</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001251</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome Sequences of Four <italic>Staphylococcus capitis</italic> NRCS-A Isolates from Geographically Distant Neonatal Intensive Care Units</title><author><name sortKey="Lemriss, H" sort="Lemriss, H" uniqKey="Lemriss H" first="H." last="Lemriss">H. Lemriss</name><affiliation><nlm:aff id="aff1"><addr-line>Biotechnology Laboratory (Medbiotech), Medical and Pharmacy School, University Mohammed V de Rabat, Rabat, Morocco</addr-line></nlm:aff></affiliation></author><author><name sortKey="Lemriss, S" sort="Lemriss, S" uniqKey="Lemriss S" first="S." last="Lemriss">S. Lemriss</name><affiliation><nlm:aff id="aff2"><addr-line>Department of Biosecurity PCL3, Laboratory of Research and Medical Analysis of the Fraternal of Gendarmerie Royale, Rabat, Morocco</addr-line></nlm:aff></affiliation></author><author><name sortKey="Martins Simoes, P" sort="Martins Simoes, P" uniqKey="Martins Simoes P" first="P." last="Martins-Simoes">P. Martins-Simoes</name><affiliation><nlm:aff id="aff3"><addr-line>International Centre for Research in Infectious diseases, INSERM, University of Lyon, Lyon, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff4"><addr-line>Department of Clinical Microbiology, Northern Hospital Group, Hospices Civils de Lyon, Lyon, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff5"><addr-line>National Reference Center for Staphylococci, Hospices Civils de Lyon, Lyon, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Butin, M" sort="Butin, M" uniqKey="Butin M" first="M." last="Butin">M. Butin</name><affiliation><nlm:aff id="aff3"><addr-line>International Centre for Research in Infectious diseases, INSERM, University of Lyon, Lyon, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Lahlou, L" sort="Lahlou, L" uniqKey="Lahlou L" first="L." last="Lahlou">L. Lahlou</name><affiliation><nlm:aff id="aff1"><addr-line>Biotechnology Laboratory (Medbiotech), Medical and Pharmacy School, University Mohammed V de Rabat, Rabat, Morocco</addr-line></nlm:aff></affiliation></author><author><name sortKey="Rasigade, J P" sort="Rasigade, J P" uniqKey="Rasigade J" first="J.-P." last="Rasigade">J.-P. Rasigade</name><affiliation><nlm:aff id="aff3"><addr-line>International Centre for Research in Infectious diseases, INSERM, University of Lyon, Lyon, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff4"><addr-line>Department of Clinical Microbiology, Northern Hospital Group, Hospices Civils de Lyon, Lyon, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Kearns, A" sort="Kearns, A" uniqKey="Kearns A" first="A." last="Kearns">A. Kearns</name><affiliation><nlm:aff id="aff6"><addr-line>Public Health England, Colindale, London, United Kingdom</addr-line></nlm:aff></affiliation></author><author><name sortKey="Denis, O" sort="Denis, O" uniqKey="Denis O" first="O." last="Denis">O. Denis</name><affiliation><nlm:aff id="aff7"><addr-line>Erasme Hospital, Université Libre de Bruxelles, Brussels, Belgium</addr-line></nlm:aff></affiliation></author><author><name sortKey="Deighton, M" sort="Deighton, M" uniqKey="Deighton M" first="M." last="Deighton">M. Deighton</name><affiliation><nlm:aff id="aff8"><addr-line>RMIT University, Bundoora, Victoria, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Ibrahimi, A" sort="Ibrahimi, A" uniqKey="Ibrahimi A" first="A." last="Ibrahimi">A. Ibrahimi</name><affiliation><nlm:aff id="aff1"><addr-line>Biotechnology Laboratory (Medbiotech), Medical and Pharmacy School, University Mohammed V de Rabat, Rabat, Morocco</addr-line></nlm:aff></affiliation></author><author><name sortKey="Laurent, F" sort="Laurent, F" uniqKey="Laurent F" first="F." last="Laurent">F. Laurent</name><affiliation><nlm:aff id="aff3"><addr-line>International Centre for Research in Infectious diseases, INSERM, University of Lyon, Lyon, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff4"><addr-line>Department of Clinical Microbiology, Northern Hospital Group, Hospices Civils de Lyon, Lyon, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff5"><addr-line>National Reference Center for Staphylococci, Hospices Civils de Lyon, Lyon, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="El Kabbaj, S" sort="El Kabbaj, S" uniqKey="El Kabbaj S" first="S." last="El Kabbaj">S. El Kabbaj</name><affiliation><nlm:aff id="aff2"><addr-line>Department of Biosecurity PCL3, Laboratory of Research and Medical Analysis of the Fraternal of Gendarmerie Royale, Rabat, Morocco</addr-line></nlm:aff></affiliation></author></analytic><series><title level="j">Genome Announcements</title><idno type="eISSN">2169-8287</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Staphylococcus capitis</italic> pulsotype NRCS-A was previously reported as a frequent cause of late-onset sepsis in neonatal intensive care units (NICUs) worldwide. Here, we report the whole-genome shotgun sequences of four <italic>S. capitis</italic> pulsotype NCRS-A strains, CR03, CR04, CR05, and CR09, isolated from Belgium, Australia, the United Kingdom, and France, respectively.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Klingenberg, C" uniqKey="Klingenberg C">C Klingenberg</name></author><author><name sortKey="R Nnestad, A" uniqKey="R Nnestad A">A Rønnestad</name></author><author><name sortKey="Anderson, As" uniqKey="Anderson A">AS Anderson</name></author><author><name sortKey="Abrahamsen, Tg" uniqKey="Abrahamsen T">TG Abrahamsen</name></author><author><name sortKey="Zorman, J" uniqKey="Zorman J">J Zorman</name></author><author><name sortKey="Villaruz, A" uniqKey="Villaruz A">A Villaruz</name></author><author><name sortKey="Fl Gstad, T" uniqKey="Fl Gstad T">T Flægstad</name></author><author><name sortKey="Otto, M" uniqKey="Otto M">M Otto</name></author><author><name sortKey="Sollid, 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Genome Announc</journal-id><journal-id journal-id-type="iso-abbrev">Genome Announc</journal-id><journal-id journal-id-type="hwp">ga</journal-id><journal-id journal-id-type="pmc">ga</journal-id><journal-id journal-id-type="publisher-id">GA</journal-id><journal-title-group><journal-title>Genome Announcements</journal-title></journal-title-group><issn pub-type="epub">2169-8287</issn><publisher><publisher-name>American Society for Microbiology</publisher-name><publisher-loc>1752 N St., N.W., Washington, DC</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">26251481</article-id><article-id pub-id-type="pmc">4541270</article-id><article-id pub-id-type="publisher-id">genomeA00501-15</article-id><article-id pub-id-type="doi">10.1128/genomeA.00501-15</article-id><article-categories><subj-group subj-group-type="heading"><subject>Prokaryotes</subject></subj-group></article-categories><title-group><article-title>Genome Sequences of Four <italic>Staphylococcus capitis</italic> NRCS-A Isolates from Geographically Distant Neonatal Intensive Care Units</article-title><alt-title alt-title-type="running-head">Genome Announcement</alt-title><alt-title alt-title-type="short-authors">Lemriss et al.</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Lemriss</surname><given-names>H.</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Lemriss</surname><given-names>S.</given-names></name><xref ref-type="aff" rid="aff2"><sup>b</sup></xref></contrib><contrib contrib-type="author"><name><surname>Martins-Simoes</surname><given-names>P.</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref><xref ref-type="aff" rid="aff4"><sup>d</sup></xref><xref ref-type="aff" rid="aff5"><sup>e</sup></xref></contrib><contrib contrib-type="author"><name><surname>Butin</surname><given-names>M.</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref></contrib><contrib contrib-type="author"><name><surname>Lahlou</surname><given-names>L.</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Rasigade</surname><given-names>J.-P.</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref><xref ref-type="aff" rid="aff4"><sup>d</sup></xref></contrib><contrib contrib-type="author"><name><surname>Kearns</surname><given-names>A.</given-names></name><xref ref-type="aff" rid="aff6"><sup>f</sup></xref></contrib><contrib contrib-type="author"><name><surname>Denis</surname><given-names>O.</given-names></name><xref ref-type="aff" rid="aff7"><sup>g</sup></xref></contrib><contrib contrib-type="author"><name><surname>Deighton</surname><given-names>M.</given-names></name><xref ref-type="aff" rid="aff8"><sup>h</sup></xref></contrib><contrib contrib-type="author"><name><surname>Ibrahimi</surname><given-names>A.</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Laurent</surname><given-names>F.</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref><xref ref-type="aff" rid="aff4"><sup>d</sup></xref><xref ref-type="aff" rid="aff5"><sup>e</sup></xref></contrib><contrib contrib-type="author"><name><surname>El Kabbaj</surname><given-names>S.</given-names></name><xref ref-type="aff" rid="aff2"><sup>b</sup></xref></contrib><aff id="aff1"><label>a</label><addr-line>Biotechnology Laboratory (Medbiotech), Medical and Pharmacy School, University Mohammed V de Rabat, Rabat, Morocco</addr-line></aff><aff id="aff2"><label>b</label><addr-line>Department of Biosecurity PCL3, Laboratory of Research and Medical Analysis of the Fraternal of Gendarmerie Royale, Rabat, Morocco</addr-line></aff><aff id="aff3"><label>c</label><addr-line>International Centre for Research in Infectious diseases, INSERM, University of Lyon, Lyon, France</addr-line></aff><aff id="aff4"><label>d</label><addr-line>Department of Clinical Microbiology, Northern Hospital Group, Hospices Civils de Lyon, Lyon, France</addr-line></aff><aff id="aff5"><label>e</label><addr-line>National Reference Center for Staphylococci, Hospices Civils de Lyon, Lyon, France</addr-line></aff><aff id="aff6"><label>f</label><addr-line>Public Health England, Colindale, London, United Kingdom</addr-line></aff><aff id="aff7"><label>g</label><addr-line>Erasme Hospital, Université Libre de Bruxelles, Brussels, Belgium</addr-line></aff><aff id="aff8"><label>h</label><addr-line>RMIT University, Bundoora, Victoria, Australia</addr-line></aff></contrib-group><author-notes><corresp id="cor1">Address correspondence to S. Lemriss, <email>lemrisssanaa@hotmail.com</email>.</corresp></author-notes><pub-date pub-type="epub"><day>6</day><month>8</month><year>2015</year></pub-date><pub-date pub-type="collection"><season>Jul-Aug</season><year>2015</year></pub-date><volume>3</volume><issue>4</issue><elocation-id>e00501-15</elocation-id><history><date date-type="received"><day>15</day><month>4</month><year>2015</year></date><date date-type="accepted"><day>16</day><month>6</month><year>2015</year></date></history><permissions><copyright-statement>Copyright © 2015 Lemriss et al.</copyright-statement><copyright-year>2015</copyright-year><copyright-holder>Lemriss et al.</copyright-holder><license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0/"><license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">Creative Commons Attribution 3.0 Unported license</ext-link>.</license-p></license></permissions><self-uri content-type="pdf" xlink:href="jga004152801001.pdf"></self-uri><abstract><p><italic>Staphylococcus capitis</italic> pulsotype NRCS-A was previously reported as a frequent cause of late-onset sepsis in neonatal intensive care units (NICUs) worldwide. Here, we report the whole-genome shotgun sequences of four <italic>S. capitis</italic> pulsotype NCRS-A strains, CR03, CR04, CR05, and CR09, isolated from Belgium, Australia, the United Kingdom, and France, respectively.</p></abstract><counts><fig-count count="0"></fig-count><table-count count="1"></table-count><equation-count count="0"></equation-count><ref-count count="20"></ref-count><page-count count="2"></page-count><word-count count="1697"></word-count></counts><custom-meta-group><custom-meta><meta-name>cover-date</meta-name><meta-value>July/August 2015</meta-value></custom-meta></custom-meta-group></article-meta></front><body><sec id="h0.0"><title>GENOME ANNOUNCEMENT</title><p>Coagulase-negative staphylococci (CoNS) are the most frequently encountered pathogens in neonatal intensive care units (NICUs) (<xref rid="B1" ref-type="bibr">1</xref>). However, in the NICU setting, recent studies have indicated that methicillin-resistant <italic>Staphylococcus capitis</italic> might emerge as a significant pathogen, causing late-onset sepsis (LOS) in several neonatal intensive care units in France, the Netherlands, and Australia (<xref rid="B2" ref-type="bibr">2</xref><xref ref-type="bibr" rid="B3">–</xref><xref rid="B4" ref-type="bibr">4</xref>).</p><p>A study in French NICUs demonstrated the spread of a single clonal population of methicillin-resistant <italic>S. capitis</italic> (pulsotype NRCS-A) associated with reduced susceptibility to vancomycin, which is the first line of antibiotics used in cases of LOS. Moreover, this clone has also been recently identified in NICUs in Belgium, the United Kingdom, and Australia, suggesting a worldwide distribution (<xref rid="B5" ref-type="bibr">5</xref>, <xref rid="B6" ref-type="bibr">6</xref>).</p><p>In this report, we present the draft genome sequences of four <italic>S. capitis</italic> (pulsotype NRCS-A) strains (CR03, CR04, CR05, and CR09) isolated from blood cultures from four neonates hospitalized in NICUs in Belgium, Australia, the United Kingdom, and France, respectively.</p><p>All <italic>S. capitis</italic> strains were grown in blood agar at 37°C, and genomic DNA was extracted using the PureLink genomic DNA kit (Invitrogen), according to the manufacturer’s recommended protocol. The quantity of DNA was determined using a NanoVue Plus (HVD Lifesciences), and 1 µg of DNA was used to sequence the whole genome of each strain. The 454-shotgun libraries were prepared from the extracted genomic DNA following GS rapid library protocol (Roche 454; Roche).</p><p>The genome sequence of each <italic>S. capitis</italic> strain was determined by high-throughput sequencing performed on a Genome Sequencer FLX+ system (454 Life Sciences/Roche) using FLX Titanium reagents, according to the manufacturer’s protocols and instructions. <italic>De novo</italic> assemblies were performed using the Roche Newbler (version 2.9) software package, and the sequencing results are summarized in <xref ref-type="table" rid="tab1">Table 1</xref>.</p><table-wrap id="tab1" orientation="portrait" position="float"><label>TABLE 1</label><caption><p>Summary of genome sequencing results in the present study</p></caption><table frame="hsides" rules="groups"><colgroup span="1"><col align="left" span="1"></col><col align="left" span="1"></col><col align="left" span="1"></col><col align="left" span="1"></col><col align="left" span="1"></col><col align="left" span="1"></col><col align="left" span="1"></col><col align="left" span="1"></col></colgroup><thead><tr><th rowspan="1" colspan="1"><italic>S. capitis</italic> strain</th><th rowspan="1" colspan="1">Country source</th><th rowspan="1" colspan="1">Reads (Mb)</th><th rowspan="1" colspan="1">Fold coverage (×)</th><th rowspan="1" colspan="1">No. of contigs</th><th rowspan="1" colspan="1">Genome size (bp)</th><th rowspan="1" colspan="1">G+C content (%)</th><th rowspan="1" colspan="1">Accession no.</th></tr></thead><tbody><tr><td rowspan="1" colspan="1">CR03</td><td rowspan="1" colspan="1">Belgium</td><td rowspan="1" colspan="1">141,728</td><td rowspan="1" colspan="1">30</td><td rowspan="1" colspan="1">31</td><td rowspan="1" colspan="1">2,508,352</td><td rowspan="1" colspan="1">32.81</td><td rowspan="1" colspan="1"><ext-link ext-link-type="uri" xlink:href="https://www.ebi.ac.uk/ena/data/view/CTEB00000000">CTEB01000000</ext-link></td></tr><tr><td rowspan="1" colspan="1">CR04</td><td rowspan="1" colspan="1">Australia</td><td rowspan="1" colspan="1">132,280</td><td rowspan="1" colspan="1">30</td><td rowspan="1" colspan="1">38</td><td rowspan="1" colspan="1">2,512,289</td><td rowspan="1" colspan="1">32.80</td><td rowspan="1" colspan="1"><ext-link ext-link-type="uri" xlink:href="https://www.ebi.ac.uk/ena/data/view/CTEM00000000">CTEM01000000</ext-link></td></tr><tr><td rowspan="1" colspan="1">CR05</td><td rowspan="1" colspan="1">United Kingdom</td><td rowspan="1" colspan="1">139,569</td><td rowspan="1" colspan="1">31</td><td rowspan="1" colspan="1">39</td><td rowspan="1" colspan="1">2,543,917</td><td rowspan="1" colspan="1">32.84</td><td rowspan="1" colspan="1"><ext-link ext-link-type="uri" xlink:href="https://www.ebi.ac.uk/ena/data/view/CTEO00000000">CTEO01000000</ext-link></td></tr><tr><td rowspan="1" colspan="1">CR09</td><td rowspan="1" colspan="1">France</td><td rowspan="1" colspan="1">132,205</td><td rowspan="1" colspan="1">30</td><td rowspan="1" colspan="1">34</td><td rowspan="1" colspan="1">2,490,458</td><td rowspan="1" colspan="1">32.82</td><td rowspan="1" colspan="1"><ext-link ext-link-type="uri" xlink:href="https://www.ebi.ac.uk/ena/data/view/CTEL00000000">CTEL01000000</ext-link></td></tr></tbody></table></table-wrap><p>An automatic syntactic and functional annotation of the draft genome was performed using the MicroScope platform pipeline (<xref rid="B7" ref-type="bibr">7</xref>, <xref rid="B8" ref-type="bibr">8</xref>). The syntactic analysis combines a set of programs, including AMIGene (<xref rid="B9" ref-type="bibr">9</xref>), tRNAscan-SE (<xref rid="B10" ref-type="bibr">10</xref>), RNAmmer (<xref rid="B11" ref-type="bibr">11</xref>), Rfam scan (<xref rid="B12" ref-type="bibr">12</xref>), and Prodigal software (<xref rid="B13" ref-type="bibr">13</xref>) to predict genomic objects that are mainly coding sequences (CDSs) and RNA genes. More than 20 bioinformatics methods were used for functional and relational analyses. The homology search was performed in the generalist databank UniProt (<xref rid="B14" ref-type="bibr">14</xref>) and in more specialized databases, such as COG (<xref rid="B15" ref-type="bibr">15</xref>), InterPro (<xref rid="B16" ref-type="bibr">16</xref>), PRIAM profiles for enzymatic classification (<xref rid="B17" ref-type="bibr">17</xref>), prediction of protein localization using TMHMM (<xref rid="B18" ref-type="bibr">18</xref>), SignalP (<xref rid="B19" ref-type="bibr">19</xref>), and PSORTb (<xref rid="B20" ref-type="bibr">20</xref>) tools.</p><p>The chromosome of strain CR03 (ENA accession no. CTEB01000000) contains 2,575 genes, 2,466 coding sequences (CDSs), 4 rRNAs, and 61 tRNAs; the chromosome of strain CR04 (accession no. CTEM01000000) contains 2,566 genes, 2,457 CDSs, 4 rRNAs, and 60 tRNAs; the chromosome of strain CR05 (accession no. CTEO01000000) contains 2,624 genes, 2,508 CDSs, 4 rRNAs, and 60 tRNAs; and the chromosome of strain CR09 (accession no. CTEL01000000) contains 2,540 genes, 2,432 CDSs, 4 rRNAs, and 59 tRNAs.</p><sec id="s1"><title>Nucleotide sequence accession numbers.</title><p>This whole-genome shotgun project has been deposited at the ENA database under the accession numbers listed in <xref ref-type="table" rid="tab1">Table 1</xref>. The versions described in this paper are in the first versions, under BioProject designation no. PRJEB8618.</p></sec></sec></body><back><fn-group><fn fn-type="other"><p><bold>Citation</bold> Lemriss H, Lemriss S, Martins-Simoes P, Butin M, Lahlou L, Rasigade J-P, Kearns A, Denis O, Deighton M, Ibrahimi A, Laurent F, El Kabbaj S. 2015. Genome sequences of four <italic>Staphylococcus capitis</italic> NRCS-A isolates from geographically distant neonatal intensive care units. Genome Anounc 3(4):e00501-15. doi:10.1128/genomeA.00501-15.</p></fn></fn-group><ack><title>ACKNOWLEDGMENTS</title><p>This work was supported by a grant from the Fondation pour la Recherche Médicale (FRM) (grant ING20111223510) and by the Institut National de la Recherche Médicale (INSERM) and the French Ministry of Health. 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