MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data
Identifieur interne : 002049 ( PascalFrancis/Corpus ); précédent : 002048; suivant : 002050MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data
Auteurs : Hiren J. Joshi ; Matthias Hirsch-Hoffmann ; Katja Baerenfaller ; Wilhelm Gruissem ; Sacha Baginsky ; Robert Schmidt ; Waltraud X. Schulze ; QI SUN ; Klaas J. Van Wijk ; Volker Egelhofer ; Stefanie Wienkoop ; Wolfram Weckwerth ; Christophe Bruley ; Norbert Rolland ; Tetsuro Toyoda ; Hirofumi Nakagami ; Alexandra M. Jones ; Steven P. Briggs ; Ian Castleden ; Sandra K. Tanz ; A. Harvey Millar ; Joshua L. HeazlewoodSource :
- Plant physiology : (Bethesda) [ 0032-0889 ] ; 2011.
Descripteurs français
- Pascal (Inist)
English descriptors
Abstract
Proteomics has become a critical tool in the functional understanding of plant processes at the molecular level. Proteomics-based studies have also contributed to the ever-expanding array of data in modern biology, with many generating Web portals and online resources that contain incrementally expanding and updated information. Many of these resources reflect specialist research areas with significant and novel information that is not currently captured by centralized repositories. The Arabidopsis (Arabidopsis thaliana) community is well served by a number of online proteomics resources that hold an abundance of functional information. These sites can be difficult to locate among a multitude of online resources. Furthermore, they can be difficult to navigate in order to identify specific features of interest without significant technical knowledge. Recently, members of the Arabidopsis proteomics community involved in developing many of these resources decided to develop a summary aggregation portal that is capable of retrieving proteomics data from a series of online resources on the fly. The Web portal is known as the MASCP Gator and can be accessed at the following address: http://gator.masc-proteomics.org/. Significantly, proteomics data displayed at this site retrieve information from the data repositories upon each request. This means that information is always up to date and displays the latest data sets. The site also provides hyperlinks back to the source information hosted at each of the curated databases to facilitate more in-depth analysis of the primary data.
Notice en format standard (ISO 2709)
Pour connaître la documentation sur le format Inist Standard.
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Format Inist (serveur)
| NO : | PASCAL 11-0079922 INIST |
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| ET : | MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data |
| AU : | JOSHI (Hiren J.); HIRSCH-HOFFMANN (Matthias); BAERENFALLER (Katja); GRUISSEM (Wilhelm); BAGINSKY (Sacha); SCHMIDT (Robert); SCHULZE (Waltraud X.); QI SUN; VAN WIJK (Klaas J.); EGELHOFER (Volker); WIENKOOP (Stefanie); WECKWERTH (Wolfram); BRULEY (Christophe); ROLLAND (Norbert); TOYODA (Tetsuro); NAKAGAMI (Hirofumi); JONES (Alexandra M.); BRIGGS (Steven P.); CASTLEDEN (Ian); TANZ (Sandra K.); HARVEY MILLAR (A.); HEAZLEWOOD (Joshua L.) |
| AF : | Joint BioEnergy Institute, Lawrence Berkeley National Laboratory/Berkeley, California 94720/Etats-Unis (1 aut., 22 aut.); Department of Biology, Eidgenössisch Technische Hochschule Zurich/8092 Zurich/Suisse (2 aut., 3 aut., 4 aut.); Institute of Biochemistry and Biotechnology, Martin-Luther-University Halle-Wittenberg/06120 Halle/Allemagne (5 aut.); Max-Planck Institute for Molecular Plant Physiology/14476 Potsdam-Golm/Allemagne (6 aut., 7 aut.); Department of Plant Biology, Cornell University/Ithaca, New York 14853/Etats-Unis (8 aut., 9 aut.); Molecular Systems Biology, University of Vienna/1090 Vienna/Autriche (10 aut., 11 aut., 12 aut.); Institut National de la Santé et de la Recherche Médicale, Laboratoire d'Etude de la Dynamique des Protéomes, U880/38000 Grenoble/France (13 aut.); Commissariat à l'Énergie Atomique et aux Energies Alternatives, Direction des Sciences du Vivant, Institut de Recherches en Technologies et Sciences pour le Vivant/38000 Grenoble/France (13 aut., 14 aut.); Université Joseph Fourier/38000 Grenoble/France (13 aut., 14 aut.); CNRS, Laboratoire de Physiologie Cellulaire Végétale, UMR5168/38000 Grenoble/France (14 aut.); INRA, UMR1200/38000 Grenoble/France (14 aut.); RIKEN Plant Science Center and RIKEN Bioinformatics and Systems Engineering Division/Tsurumi-ku, Yokohama 230-0045/Japon (15 aut., 16 aut.); Sainsbury Laboratory, John Innes Centre, Norwich Research Park/Norwich NR4 7UH/Royaume-Uni (17 aut.); Division of Biology, University of California San Diego/La Jolla, California 92093/Etats-Unis (18 aut.); Centre of Excellence for Computational Systems Biology, University of Western Australia/Crawley 6009, Western Australia/Australie (19 aut.); Australian Research Council Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks, University of Western Australia/Crawley 6009, Western Australia/Australie (19 aut., 20 aut., 21 aut.) |
| DT : | Publication en série; Niveau analytique |
| SO : | Plant physiology : (Bethesda); ISSN 0032-0889; Coden PPHYA5; Etats-Unis; Da. 2011; Vol. 155; No. 1; Pp. 259-270; Bibl. 1 p.3/4 |
| LA : | Anglais |
| EA : | Proteomics has become a critical tool in the functional understanding of plant processes at the molecular level. Proteomics-based studies have also contributed to the ever-expanding array of data in modern biology, with many generating Web portals and online resources that contain incrementally expanding and updated information. Many of these resources reflect specialist research areas with significant and novel information that is not currently captured by centralized repositories. The Arabidopsis (Arabidopsis thaliana) community is well served by a number of online proteomics resources that hold an abundance of functional information. These sites can be difficult to locate among a multitude of online resources. Furthermore, they can be difficult to navigate in order to identify specific features of interest without significant technical knowledge. Recently, members of the Arabidopsis proteomics community involved in developing many of these resources decided to develop a summary aggregation portal that is capable of retrieving proteomics data from a series of online resources on the fly. The Web portal is known as the MASCP Gator and can be accessed at the following address: http://gator.masc-proteomics.org/. Significantly, proteomics data displayed at this site retrieve information from the data repositories upon each request. This means that information is always up to date and displays the latest data sets. The site also provides hyperlinks back to the source information hosted at each of the curated databases to facilitate more in-depth analysis of the primary data. |
| CC : | 002A10 |
| FD : | Agrégation; Visualisation; Protéomique; Arabidopsis thaliana; Physiologie végétale |
| FG : | Cruciferae; Dicotyledones; Angiospermae; Spermatophyta; Plante expérimentale |
| ED : | Aggregation; Visualization; Proteomics; Arabidopsis thaliana; Plant physiology |
| EG : | Cruciferae; Dicotyledones; Angiospermae; Spermatophyta; Experimental plant |
| SD : | Agregación; Visualización; Proteómica; Arabidopsis thaliana; Fisiología vegetal |
| LO : | INIST-3000.354000194571010260 |
| ID : | 11-0079922 |
Links to Exploration step
Pascal:11-0079922Le document en format XML
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Jones</name><affiliation><inist:fA14 i1="13"><s1>Sainsbury Laboratory, John Innes Centre, Norwich Research Park</s1><s2>Norwich NR4 7UH</s2><s3>GBR</s3><sZ>17 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Briggs, Steven P" sort="Briggs, Steven P" uniqKey="Briggs S" first="Steven P." last="Briggs">Steven P. Briggs</name><affiliation><inist:fA14 i1="14"><s1>Division of Biology, University of California San Diego</s1><s2>La Jolla, California 92093</s2><s3>USA</s3><sZ>18 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Castleden, Ian" sort="Castleden, Ian" uniqKey="Castleden I" first="Ian" last="Castleden">Ian Castleden</name><affiliation><inist:fA14 i1="15"><s1>Centre of Excellence for Computational Systems Biology, University of Western Australia</s1><s2>Crawley 6009, Western Australia</s2><s3>AUS</s3><sZ>19 aut.</sZ></inist:fA14></affiliation><affiliation><inist:fA14 i1="16"><s1>Australian Research Council Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks, University of Western Australia</s1><s2>Crawley 6009, Western Australia</s2><s3>AUS</s3><sZ>19 aut.</sZ><sZ>20 aut.</sZ><sZ>21 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Tanz, Sandra K" sort="Tanz, Sandra K" uniqKey="Tanz S" first="Sandra K." last="Tanz">Sandra K. Tanz</name><affiliation><inist:fA14 i1="16"><s1>Australian Research Council Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks, University of Western Australia</s1><s2>Crawley 6009, Western Australia</s2><s3>AUS</s3><sZ>19 aut.</sZ><sZ>20 aut.</sZ><sZ>21 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Harvey Millar, A" sort="Harvey Millar, A" uniqKey="Harvey Millar A" first="A." last="Harvey Millar">A. Harvey Millar</name><affiliation><inist:fA14 i1="16"><s1>Australian Research Council Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks, University of Western Australia</s1><s2>Crawley 6009, Western Australia</s2><s3>AUS</s3><sZ>19 aut.</sZ><sZ>20 aut.</sZ><sZ>21 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Heazlewood, Joshua L" sort="Heazlewood, Joshua L" uniqKey="Heazlewood J" first="Joshua L." last="Heazlewood">Joshua L. Heazlewood</name><affiliation><inist:fA14 i1="01"><s1>Joint BioEnergy Institute, Lawrence Berkeley National Laboratory</s1><s2>Berkeley, California 94720</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>22 aut.</sZ></inist:fA14></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">INIST</idno><idno type="inist">11-0079922</idno><date when="2011">2011</date><idno type="stanalyst">PASCAL 11-0079922 INIST</idno><idno type="RBID">Pascal:11-0079922</idno><idno type="wicri:Area/PascalFrancis/Corpus">002049</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a"><sub>MA</sub>SCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data</title><author><name sortKey="Joshi, Hiren J" sort="Joshi, Hiren J" uniqKey="Joshi H" first="Hiren J." last="Joshi">Hiren J. Joshi</name><affiliation><inist:fA14 i1="01"><s1>Joint BioEnergy Institute, Lawrence Berkeley National Laboratory</s1><s2>Berkeley, California 94720</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>22 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Hirsch Hoffmann, Matthias" sort="Hirsch Hoffmann, Matthias" uniqKey="Hirsch Hoffmann M" first="Matthias" last="Hirsch-Hoffmann">Matthias Hirsch-Hoffmann</name><affiliation><inist:fA14 i1="02"><s1>Department of Biology, Eidgenössisch Technische Hochschule Zurich</s1><s2>8092 Zurich</s2><s3>CHE</s3><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Baerenfaller, Katja" sort="Baerenfaller, Katja" uniqKey="Baerenfaller K" first="Katja" last="Baerenfaller">Katja Baerenfaller</name><affiliation><inist:fA14 i1="02"><s1>Department of Biology, Eidgenössisch Technische Hochschule Zurich</s1><s2>8092 Zurich</s2><s3>CHE</s3><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Gruissem, Wilhelm" sort="Gruissem, Wilhelm" uniqKey="Gruissem W" first="Wilhelm" last="Gruissem">Wilhelm Gruissem</name><affiliation><inist:fA14 i1="02"><s1>Department of Biology, Eidgenössisch Technische Hochschule Zurich</s1><s2>8092 Zurich</s2><s3>CHE</s3><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Baginsky, Sacha" sort="Baginsky, Sacha" uniqKey="Baginsky S" first="Sacha" last="Baginsky">Sacha Baginsky</name><affiliation><inist:fA14 i1="03"><s1>Institute of Biochemistry and Biotechnology, Martin-Luther-University Halle-Wittenberg</s1><s2>06120 Halle</s2><s3>DEU</s3><sZ>5 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Schmidt, Robert" sort="Schmidt, Robert" uniqKey="Schmidt R" first="Robert" last="Schmidt">Robert Schmidt</name><affiliation><inist:fA14 i1="04"><s1>Max-Planck Institute for Molecular Plant Physiology</s1><s2>14476 Potsdam-Golm</s2><s3>DEU</s3><sZ>6 aut.</sZ><sZ>7 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Schulze, Waltraud X" sort="Schulze, Waltraud X" uniqKey="Schulze W" first="Waltraud X." last="Schulze">Waltraud X. Schulze</name><affiliation><inist:fA14 i1="04"><s1>Max-Planck Institute for Molecular Plant Physiology</s1><s2>14476 Potsdam-Golm</s2><s3>DEU</s3><sZ>6 aut.</sZ><sZ>7 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Qi Sun" sort="Qi Sun" uniqKey="Qi Sun" last="Qi Sun">QI SUN</name><affiliation><inist:fA14 i1="05"><s1>Department of Plant Biology, Cornell University</s1><s2>Ithaca, New York 14853</s2><s3>USA</s3><sZ>8 aut.</sZ><sZ>9 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Van Wijk, Klaas J" sort="Van Wijk, Klaas J" uniqKey="Van Wijk K" first="Klaas J." last="Van Wijk">Klaas J. Van Wijk</name><affiliation><inist:fA14 i1="05"><s1>Department of Plant Biology, Cornell University</s1><s2>Ithaca, New York 14853</s2><s3>USA</s3><sZ>8 aut.</sZ><sZ>9 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Egelhofer, Volker" sort="Egelhofer, Volker" uniqKey="Egelhofer V" first="Volker" last="Egelhofer">Volker Egelhofer</name><affiliation><inist:fA14 i1="06"><s1>Molecular Systems Biology, University of Vienna</s1><s2>1090 Vienna</s2><s3>AUT</s3><sZ>10 aut.</sZ><sZ>11 aut.</sZ><sZ>12 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Wienkoop, Stefanie" sort="Wienkoop, Stefanie" uniqKey="Wienkoop S" first="Stefanie" last="Wienkoop">Stefanie Wienkoop</name><affiliation><inist:fA14 i1="06"><s1>Molecular Systems Biology, University of Vienna</s1><s2>1090 Vienna</s2><s3>AUT</s3><sZ>10 aut.</sZ><sZ>11 aut.</sZ><sZ>12 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Weckwerth, Wolfram" sort="Weckwerth, Wolfram" uniqKey="Weckwerth W" first="Wolfram" last="Weckwerth">Wolfram Weckwerth</name><affiliation><inist:fA14 i1="06"><s1>Molecular Systems Biology, University of Vienna</s1><s2>1090 Vienna</s2><s3>AUT</s3><sZ>10 aut.</sZ><sZ>11 aut.</sZ><sZ>12 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Bruley, Christophe" sort="Bruley, Christophe" uniqKey="Bruley C" first="Christophe" last="Bruley">Christophe Bruley</name><affiliation><inist:fA14 i1="07"><s1>Institut National de la Santé et de la Recherche Médicale, Laboratoire d'Etude de la Dynamique des Protéomes, U880</s1><s2>38000 Grenoble</s2><s3>FRA</s3><sZ>13 aut.</sZ></inist:fA14></affiliation><affiliation><inist:fA14 i1="08"><s1>Commissariat à l'Énergie Atomique et aux Energies Alternatives, Direction des Sciences du Vivant, Institut de Recherches en Technologies et Sciences pour le Vivant</s1><s2>38000 Grenoble</s2><s3>FRA</s3><sZ>13 aut.</sZ><sZ>14 aut.</sZ></inist:fA14></affiliation><affiliation><inist:fA14 i1="09"><s1>Université Joseph Fourier</s1><s2>38000 Grenoble</s2><s3>FRA</s3><sZ>13 aut.</sZ><sZ>14 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Rolland, Norbert" sort="Rolland, Norbert" uniqKey="Rolland N" first="Norbert" last="Rolland">Norbert Rolland</name><affiliation><inist:fA14 i1="08"><s1>Commissariat à l'Énergie Atomique et aux Energies Alternatives, Direction des Sciences du Vivant, Institut de Recherches en Technologies et Sciences pour le Vivant</s1><s2>38000 Grenoble</s2><s3>FRA</s3><sZ>13 aut.</sZ><sZ>14 aut.</sZ></inist:fA14></affiliation><affiliation><inist:fA14 i1="09"><s1>Université Joseph Fourier</s1><s2>38000 Grenoble</s2><s3>FRA</s3><sZ>13 aut.</sZ><sZ>14 aut.</sZ></inist:fA14></affiliation><affiliation><inist:fA14 i1="10"><s1>CNRS, Laboratoire de Physiologie Cellulaire Végétale, UMR5168</s1><s2>38000 Grenoble</s2><s3>FRA</s3><sZ>14 aut.</sZ></inist:fA14></affiliation><affiliation><inist:fA14 i1="11"><s1>INRA, UMR1200</s1><s2>38000 Grenoble</s2><s3>FRA</s3><sZ>14 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Toyoda, Tetsuro" sort="Toyoda, Tetsuro" uniqKey="Toyoda T" first="Tetsuro" last="Toyoda">Tetsuro Toyoda</name><affiliation><inist:fA14 i1="12"><s1>RIKEN Plant Science Center and RIKEN Bioinformatics and Systems Engineering Division</s1><s2>Tsurumi-ku, Yokohama 230-0045</s2><s3>JPN</s3><sZ>15 aut.</sZ><sZ>16 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Nakagami, Hirofumi" sort="Nakagami, Hirofumi" uniqKey="Nakagami H" first="Hirofumi" last="Nakagami">Hirofumi Nakagami</name><affiliation><inist:fA14 i1="12"><s1>RIKEN Plant Science Center and RIKEN Bioinformatics and Systems Engineering Division</s1><s2>Tsurumi-ku, Yokohama 230-0045</s2><s3>JPN</s3><sZ>15 aut.</sZ><sZ>16 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Jones, Alexandra M" sort="Jones, Alexandra M" uniqKey="Jones A" first="Alexandra M." last="Jones">Alexandra M. Jones</name><affiliation><inist:fA14 i1="13"><s1>Sainsbury Laboratory, John Innes Centre, Norwich Research Park</s1><s2>Norwich NR4 7UH</s2><s3>GBR</s3><sZ>17 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Briggs, Steven P" sort="Briggs, Steven P" uniqKey="Briggs S" first="Steven P." last="Briggs">Steven P. Briggs</name><affiliation><inist:fA14 i1="14"><s1>Division of Biology, University of California San Diego</s1><s2>La Jolla, California 92093</s2><s3>USA</s3><sZ>18 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Castleden, Ian" sort="Castleden, Ian" uniqKey="Castleden I" first="Ian" last="Castleden">Ian Castleden</name><affiliation><inist:fA14 i1="15"><s1>Centre of Excellence for Computational Systems Biology, University of Western Australia</s1><s2>Crawley 6009, Western Australia</s2><s3>AUS</s3><sZ>19 aut.</sZ></inist:fA14></affiliation><affiliation><inist:fA14 i1="16"><s1>Australian Research Council Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks, University of Western Australia</s1><s2>Crawley 6009, Western Australia</s2><s3>AUS</s3><sZ>19 aut.</sZ><sZ>20 aut.</sZ><sZ>21 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Tanz, Sandra K" sort="Tanz, Sandra K" uniqKey="Tanz S" first="Sandra K." last="Tanz">Sandra K. Tanz</name><affiliation><inist:fA14 i1="16"><s1>Australian Research Council Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks, University of Western Australia</s1><s2>Crawley 6009, Western Australia</s2><s3>AUS</s3><sZ>19 aut.</sZ><sZ>20 aut.</sZ><sZ>21 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Harvey Millar, A" sort="Harvey Millar, A" uniqKey="Harvey Millar A" first="A." last="Harvey Millar">A. Harvey Millar</name><affiliation><inist:fA14 i1="16"><s1>Australian Research Council Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks, University of Western Australia</s1><s2>Crawley 6009, Western Australia</s2><s3>AUS</s3><sZ>19 aut.</sZ><sZ>20 aut.</sZ><sZ>21 aut.</sZ></inist:fA14></affiliation></author><author><name sortKey="Heazlewood, Joshua L" sort="Heazlewood, Joshua L" uniqKey="Heazlewood J" first="Joshua L." last="Heazlewood">Joshua L. Heazlewood</name><affiliation><inist:fA14 i1="01"><s1>Joint BioEnergy Institute, Lawrence Berkeley National Laboratory</s1><s2>Berkeley, California 94720</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>22 aut.</sZ></inist:fA14></affiliation></author></analytic><series><title level="j" type="main">Plant physiology : (Bethesda)</title><title level="j" type="abbreviated">Plant physiol. : (Bethesda)</title><idno type="ISSN">0032-0889</idno><imprint><date when="2011">2011</date></imprint></series></biblStruct></sourceDesc><seriesStmt><title level="j" type="main">Plant physiology : (Bethesda)</title><title level="j" type="abbreviated">Plant physiol. : (Bethesda)</title><idno type="ISSN">0032-0889</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Aggregation</term><term>Arabidopsis thaliana</term><term>Plant physiology</term><term>Proteomics</term><term>Visualization</term></keywords><keywords scheme="Pascal" xml:lang="fr"><term>Agrégation</term><term>Visualisation</term><term>Protéomique</term><term>Arabidopsis thaliana</term><term>Physiologie végétale</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Proteomics has become a critical tool in the functional understanding of plant processes at the molecular level. Proteomics-based studies have also contributed to the ever-expanding array of data in modern biology, with many generating Web portals and online resources that contain incrementally expanding and updated information. Many of these resources reflect specialist research areas with significant and novel information that is not currently captured by centralized repositories. The Arabidopsis (Arabidopsis thaliana) community is well served by a number of online proteomics resources that hold an abundance of functional information. These sites can be difficult to locate among a multitude of online resources. Furthermore, they can be difficult to navigate in order to identify specific features of interest without significant technical knowledge. Recently, members of the Arabidopsis proteomics community involved in developing many of these resources decided to develop a summary aggregation portal that is capable of retrieving proteomics data from a series of online resources on the fly. The Web portal is known as the MASCP Gator and can be accessed at the following address: http://gator.masc-proteomics.org/. Significantly, proteomics data displayed at this site retrieve information from the data repositories upon each request. This means that information is always up to date and displays the latest data sets. The site also provides hyperlinks back to the source information hosted at each of the curated databases to facilitate more in-depth analysis of the primary data.</div></front></TEI><inist><standard h6="B"><pA><fA01 i1="01" i2="1"><s0>0032-0889</s0></fA01><fA02 i1="01"><s0>PPHYA5</s0></fA02><fA03 i2="1"><s0>Plant physiol. : (Bethesda)</s0></fA03><fA05><s2>155</s2></fA05><fA06><s2>1</s2></fA06><fA08 i1="01" i2="1" l="ENG"><s1><sub>MA</sub>SCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data</s1></fA08><fA11 i1="01" i2="1"><s1>JOSHI (Hiren J.)</s1></fA11><fA11 i1="02" i2="1"><s1>HIRSCH-HOFFMANN (Matthias)</s1></fA11><fA11 i1="03" i2="1"><s1>BAERENFALLER (Katja)</s1></fA11><fA11 i1="04" i2="1"><s1>GRUISSEM (Wilhelm)</s1></fA11><fA11 i1="05" i2="1"><s1>BAGINSKY (Sacha)</s1></fA11><fA11 i1="06" i2="1"><s1>SCHMIDT (Robert)</s1></fA11><fA11 i1="07" i2="1"><s1>SCHULZE (Waltraud X.)</s1></fA11><fA11 i1="08" i2="1"><s1>QI SUN</s1></fA11><fA11 i1="09" i2="1"><s1>VAN WIJK (Klaas J.)</s1></fA11><fA11 i1="10" i2="1"><s1>EGELHOFER (Volker)</s1></fA11><fA11 i1="11" i2="1"><s1>WIENKOOP (Stefanie)</s1></fA11><fA11 i1="12" i2="1"><s1>WECKWERTH (Wolfram)</s1></fA11><fA11 i1="13" i2="1"><s1>BRULEY (Christophe)</s1></fA11><fA11 i1="14" i2="1"><s1>ROLLAND (Norbert)</s1></fA11><fA11 i1="15" i2="1"><s1>TOYODA (Tetsuro)</s1></fA11><fA11 i1="16" i2="1"><s1>NAKAGAMI (Hirofumi)</s1></fA11><fA11 i1="17" i2="1"><s1>JONES (Alexandra M.)</s1></fA11><fA11 i1="18" i2="1"><s1>BRIGGS (Steven P.)</s1></fA11><fA11 i1="19" i2="1"><s1>CASTLEDEN (Ian)</s1></fA11><fA11 i1="20" i2="1"><s1>TANZ (Sandra K.)</s1></fA11><fA11 i1="21" i2="1"><s1>HARVEY MILLAR (A.)</s1></fA11><fA11 i1="22" i2="1"><s1>HEAZLEWOOD (Joshua L.)</s1></fA11><fA14 i1="01"><s1>Joint BioEnergy Institute, Lawrence Berkeley National Laboratory</s1><s2>Berkeley, California 94720</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>22 aut.</sZ></fA14><fA14 i1="02"><s1>Department of Biology, Eidgenössisch Technische Hochschule Zurich</s1><s2>8092 Zurich</s2><s3>CHE</s3><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ></fA14><fA14 i1="03"><s1>Institute of Biochemistry and Biotechnology, Martin-Luther-University Halle-Wittenberg</s1><s2>06120 Halle</s2><s3>DEU</s3><sZ>5 aut.</sZ></fA14><fA14 i1="04"><s1>Max-Planck Institute for Molecular Plant Physiology</s1><s2>14476 Potsdam-Golm</s2><s3>DEU</s3><sZ>6 aut.</sZ><sZ>7 aut.</sZ></fA14><fA14 i1="05"><s1>Department of Plant Biology, Cornell University</s1><s2>Ithaca, New York 14853</s2><s3>USA</s3><sZ>8 aut.</sZ><sZ>9 aut.</sZ></fA14><fA14 i1="06"><s1>Molecular Systems Biology, University of Vienna</s1><s2>1090 Vienna</s2><s3>AUT</s3><sZ>10 aut.</sZ><sZ>11 aut.</sZ><sZ>12 aut.</sZ></fA14><fA14 i1="07"><s1>Institut National de la Santé et de la Recherche Médicale, Laboratoire d'Etude de la Dynamique des Protéomes, U880</s1><s2>38000 Grenoble</s2><s3>FRA</s3><sZ>13 aut.</sZ></fA14><fA14 i1="08"><s1>Commissariat à l'Énergie Atomique et aux Energies Alternatives, Direction des Sciences du Vivant, Institut de Recherches en Technologies et Sciences pour le Vivant</s1><s2>38000 Grenoble</s2><s3>FRA</s3><sZ>13 aut.</sZ><sZ>14 aut.</sZ></fA14><fA14 i1="09"><s1>Université Joseph Fourier</s1><s2>38000 Grenoble</s2><s3>FRA</s3><sZ>13 aut.</sZ><sZ>14 aut.</sZ></fA14><fA14 i1="10"><s1>CNRS, Laboratoire de Physiologie Cellulaire Végétale, UMR5168</s1><s2>38000 Grenoble</s2><s3>FRA</s3><sZ>14 aut.</sZ></fA14><fA14 i1="11"><s1>INRA, UMR1200</s1><s2>38000 Grenoble</s2><s3>FRA</s3><sZ>14 aut.</sZ></fA14><fA14 i1="12"><s1>RIKEN Plant Science Center and RIKEN Bioinformatics and Systems Engineering Division</s1><s2>Tsurumi-ku, Yokohama 230-0045</s2><s3>JPN</s3><sZ>15 aut.</sZ><sZ>16 aut.</sZ></fA14><fA14 i1="13"><s1>Sainsbury Laboratory, John Innes Centre, Norwich Research Park</s1><s2>Norwich NR4 7UH</s2><s3>GBR</s3><sZ>17 aut.</sZ></fA14><fA14 i1="14"><s1>Division of Biology, University of California San Diego</s1><s2>La Jolla, California 92093</s2><s3>USA</s3><sZ>18 aut.</sZ></fA14><fA14 i1="15"><s1>Centre of Excellence for Computational Systems Biology, University of Western Australia</s1><s2>Crawley 6009, Western Australia</s2><s3>AUS</s3><sZ>19 aut.</sZ></fA14><fA14 i1="16"><s1>Australian Research Council Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks, University of Western Australia</s1><s2>Crawley 6009, Western Australia</s2><s3>AUS</s3><sZ>19 aut.</sZ><sZ>20 aut.</sZ><sZ>21 aut.</sZ></fA14><fA20><s1>259-270</s1></fA20><fA21><s1>2011</s1></fA21><fA23 i1="01"><s0>ENG</s0></fA23><fA43 i1="01"><s1>INIST</s1><s2>3000</s2><s5>354000194571010260</s5></fA43><fA44><s0>0000</s0><s1>© 2011 INIST-CNRS. All rights reserved.</s1></fA44><fA45><s0>1 p.3/4</s0></fA45><fA47 i1="01" i2="1"><s0>11-0079922</s0></fA47><fA60><s1>P</s1></fA60><fA61><s0>A</s0></fA61><fA64 i1="01" i2="1"><s0>Plant physiology : (Bethesda)</s0></fA64><fA66 i1="01"><s0>USA</s0></fA66><fC01 i1="01" l="ENG"><s0>Proteomics has become a critical tool in the functional understanding of plant processes at the molecular level. Proteomics-based studies have also contributed to the ever-expanding array of data in modern biology, with many generating Web portals and online resources that contain incrementally expanding and updated information. Many of these resources reflect specialist research areas with significant and novel information that is not currently captured by centralized repositories. The Arabidopsis (Arabidopsis thaliana) community is well served by a number of online proteomics resources that hold an abundance of functional information. These sites can be difficult to locate among a multitude of online resources. Furthermore, they can be difficult to navigate in order to identify specific features of interest without significant technical knowledge. Recently, members of the Arabidopsis proteomics community involved in developing many of these resources decided to develop a summary aggregation portal that is capable of retrieving proteomics data from a series of online resources on the fly. The Web portal is known as the MASCP Gator and can be accessed at the following address: http://gator.masc-proteomics.org/. Significantly, proteomics data displayed at this site retrieve information from the data repositories upon each request. This means that information is always up to date and displays the latest data sets. The site also provides hyperlinks back to the source information hosted at each of the curated databases to facilitate more in-depth analysis of the primary data.</s0></fC01><fC02 i1="01" i2="X"><s0>002A10</s0></fC02><fC03 i1="01" i2="X" l="FRE"><s0>Agrégation</s0><s5>01</s5></fC03><fC03 i1="01" i2="X" l="ENG"><s0>Aggregation</s0><s5>01</s5></fC03><fC03 i1="01" i2="X" l="SPA"><s0>Agregación</s0><s5>01</s5></fC03><fC03 i1="02" i2="X" l="FRE"><s0>Visualisation</s0><s5>02</s5></fC03><fC03 i1="02" i2="X" l="ENG"><s0>Visualization</s0><s5>02</s5></fC03><fC03 i1="02" i2="X" l="SPA"><s0>Visualización</s0><s5>02</s5></fC03><fC03 i1="03" i2="X" l="FRE"><s0>Protéomique</s0><s5>03</s5></fC03><fC03 i1="03" i2="X" l="ENG"><s0>Proteomics</s0><s5>03</s5></fC03><fC03 i1="03" i2="X" l="SPA"><s0>Proteómica</s0><s5>03</s5></fC03><fC03 i1="04" i2="X" l="FRE"><s0>Arabidopsis thaliana</s0><s2>NS</s2><s5>10</s5></fC03><fC03 i1="04" i2="X" l="ENG"><s0>Arabidopsis thaliana</s0><s2>NS</s2><s5>10</s5></fC03><fC03 i1="04" i2="X" l="SPA"><s0>Arabidopsis thaliana</s0><s2>NS</s2><s5>10</s5></fC03><fC03 i1="05" i2="X" l="FRE"><s0>Physiologie végétale</s0><s4>CD</s4><s5>96</s5></fC03><fC03 i1="05" i2="X" l="ENG"><s0>Plant physiology</s0><s4>CD</s4><s5>96</s5></fC03><fC03 i1="05" i2="X" l="SPA"><s0>Fisiología vegetal</s0><s4>CD</s4><s5>96</s5></fC03><fC07 i1="01" i2="X" l="FRE"><s0>Cruciferae</s0><s2>NS</s2></fC07><fC07 i1="01" i2="X" l="ENG"><s0>Cruciferae</s0><s2>NS</s2></fC07><fC07 i1="01" i2="X" l="SPA"><s0>Cruciferae</s0><s2>NS</s2></fC07><fC07 i1="02" i2="X" l="FRE"><s0>Dicotyledones</s0><s2>NS</s2></fC07><fC07 i1="02" i2="X" l="ENG"><s0>Dicotyledones</s0><s2>NS</s2></fC07><fC07 i1="02" i2="X" l="SPA"><s0>Dicotyledones</s0><s2>NS</s2></fC07><fC07 i1="03" i2="X" l="FRE"><s0>Angiospermae</s0><s2>NS</s2></fC07><fC07 i1="03" i2="X" l="ENG"><s0>Angiospermae</s0><s2>NS</s2></fC07><fC07 i1="03" i2="X" l="SPA"><s0>Angiospermae</s0><s2>NS</s2></fC07><fC07 i1="04" i2="X" l="FRE"><s0>Spermatophyta</s0><s2>NS</s2></fC07><fC07 i1="04" i2="X" l="ENG"><s0>Spermatophyta</s0><s2>NS</s2></fC07><fC07 i1="04" i2="X" l="SPA"><s0>Spermatophyta</s0><s2>NS</s2></fC07><fC07 i1="05" i2="X" l="FRE"><s0>Plante expérimentale</s0><s5>31</s5></fC07><fC07 i1="05" i2="X" l="ENG"><s0>Experimental plant</s0><s5>31</s5></fC07><fC07 i1="05" i2="X" l="SPA"><s0>Planta experimental</s0><s5>31</s5></fC07><fN21><s1>052</s1></fN21><fN44 i1="01"><s1>OTO</s1></fN44><fN82><s1>OTO</s1></fN82></pA></standard><server><NO>PASCAL 11-0079922 INIST</NO><ET><sub>MA</sub>SCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data</ET><AU>JOSHI (Hiren J.); HIRSCH-HOFFMANN (Matthias); BAERENFALLER (Katja); GRUISSEM (Wilhelm); BAGINSKY (Sacha); SCHMIDT (Robert); SCHULZE (Waltraud X.); QI SUN; VAN WIJK (Klaas J.); EGELHOFER (Volker); WIENKOOP (Stefanie); WECKWERTH (Wolfram); BRULEY (Christophe); ROLLAND (Norbert); TOYODA (Tetsuro); NAKAGAMI (Hirofumi); JONES (Alexandra M.); BRIGGS (Steven P.); CASTLEDEN (Ian); TANZ (Sandra K.); HARVEY MILLAR (A.); HEAZLEWOOD (Joshua L.)</AU><AF>Joint BioEnergy Institute, Lawrence Berkeley National Laboratory/Berkeley, California 94720/Etats-Unis (1 aut., 22 aut.); Department of Biology, Eidgenössisch Technische Hochschule Zurich/8092 Zurich/Suisse (2 aut., 3 aut., 4 aut.); Institute of Biochemistry and Biotechnology, Martin-Luther-University Halle-Wittenberg/06120 Halle/Allemagne (5 aut.); Max-Planck Institute for Molecular Plant Physiology/14476 Potsdam-Golm/Allemagne (6 aut., 7 aut.); Department of Plant Biology, Cornell University/Ithaca, New York 14853/Etats-Unis (8 aut., 9 aut.); Molecular Systems Biology, University of Vienna/1090 Vienna/Autriche (10 aut., 11 aut., 12 aut.); Institut National de la Santé et de la Recherche Médicale, Laboratoire d'Etude de la Dynamique des Protéomes, U880/38000 Grenoble/France (13 aut.); Commissariat à l'Énergie Atomique et aux Energies Alternatives, Direction des Sciences du Vivant, Institut de Recherches en Technologies et Sciences pour le Vivant/38000 Grenoble/France (13 aut., 14 aut.); Université Joseph Fourier/38000 Grenoble/France (13 aut., 14 aut.); CNRS, Laboratoire de Physiologie Cellulaire Végétale, UMR5168/38000 Grenoble/France (14 aut.); INRA, UMR1200/38000 Grenoble/France (14 aut.); RIKEN Plant Science Center and RIKEN Bioinformatics and Systems Engineering Division/Tsurumi-ku, Yokohama 230-0045/Japon (15 aut., 16 aut.); Sainsbury Laboratory, John Innes Centre, Norwich Research Park/Norwich NR4 7UH/Royaume-Uni (17 aut.); Division of Biology, University of California San Diego/La Jolla, California 92093/Etats-Unis (18 aut.); Centre of Excellence for Computational Systems Biology, University of Western Australia/Crawley 6009, Western Australia/Australie (19 aut.); Australian Research Council Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks, University of Western Australia/Crawley 6009, Western Australia/Australie (19 aut., 20 aut., 21 aut.)</AF><DT>Publication en série; Niveau analytique</DT><SO>Plant physiology : (Bethesda); ISSN 0032-0889; Coden PPHYA5; Etats-Unis; Da. 2011; Vol. 155; No. 1; Pp. 259-270; Bibl. 1 p.3/4</SO><LA>Anglais</LA><EA>Proteomics has become a critical tool in the functional understanding of plant processes at the molecular level. Proteomics-based studies have also contributed to the ever-expanding array of data in modern biology, with many generating Web portals and online resources that contain incrementally expanding and updated information. Many of these resources reflect specialist research areas with significant and novel information that is not currently captured by centralized repositories. The Arabidopsis (Arabidopsis thaliana) community is well served by a number of online proteomics resources that hold an abundance of functional information. These sites can be difficult to locate among a multitude of online resources. Furthermore, they can be difficult to navigate in order to identify specific features of interest without significant technical knowledge. Recently, members of the Arabidopsis proteomics community involved in developing many of these resources decided to develop a summary aggregation portal that is capable of retrieving proteomics data from a series of online resources on the fly. The Web portal is known as the MASCP Gator and can be accessed at the following address: http://gator.masc-proteomics.org/. Significantly, proteomics data displayed at this site retrieve information from the data repositories upon each request. This means that information is always up to date and displays the latest data sets. The site also provides hyperlinks back to the source information hosted at each of the curated databases to facilitate more in-depth analysis of the primary data.</EA><CC>002A10</CC><FD>Agrégation; Visualisation; Protéomique; Arabidopsis thaliana; Physiologie végétale</FD><FG>Cruciferae; Dicotyledones; Angiospermae; Spermatophyta; Plante expérimentale</FG><ED>Aggregation; Visualization; Proteomics; Arabidopsis thaliana; Plant physiology</ED><EG>Cruciferae; Dicotyledones; Angiospermae; Spermatophyta; Experimental plant</EG><SD>Agregación; Visualización; Proteómica; Arabidopsis thaliana; Fisiología vegetal</SD><LO>INIST-3000.354000194571010260</LO><ID>11-0079922</ID></server></inist></record>Pour manipuler ce document sous Unix (Dilib)
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