Track structure modeling in liquid water: A review of the Geant4-DNA very low energy extension of the Geant4 Monte Carlo simulation toolkit.
Identifieur interne : 002E45 ( Ncbi/Merge ); précédent : 002E44; suivant : 002E46Track structure modeling in liquid water: A review of the Geant4-DNA very low energy extension of the Geant4 Monte Carlo simulation toolkit.
Auteurs : M A Bernal [Brésil] ; M C Bordage [France] ; J M C. Brown [Royaume-Uni] ; M. Davídková [République tchèque] ; E. Delage [France] ; Z. El Bitar [France] ; S A Enger [Canada] ; Z. Francis [Liban] ; S. Guatelli [Australie] ; V N Ivanchenko [Russie] ; M. Karamitros [États-Unis] ; I. Kyriakou [Grèce] ; L. Maigne [France] ; S. Meylan [France] ; K. Murakami [Japon] ; S. Okada [Japon] ; H. Payno [France] ; Y. Perrot [France] ; I. Petrovic [Serbie] ; Q T Pham [France] ; A. Ristic-Fira [Serbie] ; T. Sasaki [Japon] ; V. Št Pán [République tchèque] ; H N Tran [Viêt Nam] ; C. Villagrasa [France] ; S. Incerti [France]Source :
- Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics (AIFB) [ 1724-191X ] ; 2015.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : DNA, Water.
- Chemical Phenomena, Humans, Models, Molecular, Monte Carlo Method.
Abstract
Understanding the fundamental mechanisms involved in the induction of biological damage by ionizing radiation remains a major challenge of today's radiobiology research. The Monte Carlo simulation of physical, physicochemical and chemical processes involved may provide a powerful tool for the simulation of early damage induction. The Geant4-DNA extension of the general purpose Monte Carlo Geant4 simulation toolkit aims to provide the scientific community with an open source access platform for the mechanistic simulation of such early damage. This paper presents the most recent review of the Geant4-DNA extension, as available to Geant4 users since June 2015 (release 10.2 Beta). In particular, the review includes the description of new physical models for the description of electron elastic and inelastic interactions in liquid water, as well as new examples dedicated to the simulation of physicochemical and chemical stages of water radiolysis. Several implementations of geometrical models of biological targets are presented as well, and the list of Geant4-DNA examples is described.
DOI: 10.1016/j.ejmp.2015.10.087
PubMed: 26653251
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pubmed:26653251Le document en format XML
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<author><name sortKey="Murakami, K" sort="Murakami, K" uniqKey="Murakami K" first="K" last="Murakami">K. Murakami</name>
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<author><name sortKey="Okada, S" sort="Okada, S" uniqKey="Okada S" first="S" last="Okada">S. Okada</name>
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<author><name sortKey="Ristic Fira, A" sort="Ristic Fira, A" uniqKey="Ristic Fira A" first="A" last="Ristic-Fira">A. Ristic-Fira</name>
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<author><name sortKey="Sasaki, T" sort="Sasaki, T" uniqKey="Sasaki T" first="T" last="Sasaki">T. Sasaki</name>
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<country xml:lang="fr">République tchèque</country>
<wicri:regionArea>Department of Radiation Dosimetry, Nuclear Physics Institute of the CAS, Praha</wicri:regionArea>
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<author><name sortKey="Tran, H N" sort="Tran, H N" uniqKey="Tran H" first="H N" last="Tran">H N Tran</name>
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<wicri:regionArea>Division of Nuclear Physics, Ton Duc Thang University, Ho Chi Minh City, Viet Nam; Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City</wicri:regionArea>
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<author><name sortKey="Delage, E" sort="Delage, E" uniqKey="Delage E" first="E" last="Delage">E. Delage</name>
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<author><name sortKey="Enger, S A" sort="Enger, S A" uniqKey="Enger S" first="S A" last="Enger">S A Enger</name>
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<country xml:lang="fr">France</country>
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<country xml:lang="fr">France</country>
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<author><name sortKey="Ristic Fira, A" sort="Ristic Fira, A" uniqKey="Ristic Fira A" first="A" last="Ristic-Fira">A. Ristic-Fira</name>
<affiliation wicri:level="1"><nlm:affiliation>Vinča Institute of Nuclear Sciences, University of Belgrade, Belgrade, Serbia.</nlm:affiliation>
<country xml:lang="fr">Serbie</country>
<wicri:regionArea>Vinča Institute of Nuclear Sciences, University of Belgrade, Belgrade</wicri:regionArea>
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<author><name sortKey="Sasaki, T" sort="Sasaki, T" uniqKey="Sasaki T" first="T" last="Sasaki">T. Sasaki</name>
<affiliation wicri:level="1"><nlm:affiliation>KEK, Tsukuba, Ibaraki, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>KEK, Tsukuba, Ibaraki</wicri:regionArea>
<wicri:noRegion>Ibaraki</wicri:noRegion>
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<author><name sortKey="St Pan, V" sort="St Pan, V" uniqKey="St Pan V" first="V" last="Št Pán">V. Št Pán</name>
<affiliation wicri:level="3"><nlm:affiliation>Department of Radiation Dosimetry, Nuclear Physics Institute of the CAS, Praha, Czech Republic.</nlm:affiliation>
<country xml:lang="fr">République tchèque</country>
<wicri:regionArea>Department of Radiation Dosimetry, Nuclear Physics Institute of the CAS, Praha</wicri:regionArea>
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<author><name sortKey="Tran, H N" sort="Tran, H N" uniqKey="Tran H" first="H N" last="Tran">H N Tran</name>
<affiliation wicri:level="1"><nlm:affiliation>Division of Nuclear Physics, Ton Duc Thang University, Ho Chi Minh City, Viet Nam; Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City, Viet Nam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Division of Nuclear Physics, Ton Duc Thang University, Ho Chi Minh City, Viet Nam; Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City</wicri:regionArea>
<wicri:noRegion>Ho Chi Minh City</wicri:noRegion>
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<author><name sortKey="Villagrasa, C" sort="Villagrasa, C" uniqKey="Villagrasa C" first="C" last="Villagrasa">C. Villagrasa</name>
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<series><title level="j">Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics (AIFB)</title>
<idno type="eISSN">1724-191X</idno>
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<front><div type="abstract" xml:lang="en">Understanding the fundamental mechanisms involved in the induction of biological damage by ionizing radiation remains a major challenge of today's radiobiology research. The Monte Carlo simulation of physical, physicochemical and chemical processes involved may provide a powerful tool for the simulation of early damage induction. The Geant4-DNA extension of the general purpose Monte Carlo Geant4 simulation toolkit aims to provide the scientific community with an open source access platform for the mechanistic simulation of such early damage. This paper presents the most recent review of the Geant4-DNA extension, as available to Geant4 users since June 2015 (release 10.2 Beta). In particular, the review includes the description of new physical models for the description of electron elastic and inelastic interactions in liquid water, as well as new examples dedicated to the simulation of physicochemical and chemical stages of water radiolysis. Several implementations of geometrical models of biological targets are presented as well, and the list of Geant4-DNA examples is described.</div>
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<Month>12</Month>
<Day>24</Day>
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<DateCompleted><Year>2016</Year>
<Month>09</Month>
<Day>30</Day>
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<DateRevised><Year>2017</Year>
<Month>10</Month>
<Day>17</Day>
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<Issue>8</Issue>
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<Month>Dec</Month>
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<Title>Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics (AIFB)</Title>
<ISOAbbreviation>Phys Med</ISOAbbreviation>
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<ArticleTitle>Track structure modeling in liquid water: A review of the Geant4-DNA very low energy extension of the Geant4 Monte Carlo simulation toolkit.</ArticleTitle>
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<Abstract><AbstractText>Understanding the fundamental mechanisms involved in the induction of biological damage by ionizing radiation remains a major challenge of today's radiobiology research. The Monte Carlo simulation of physical, physicochemical and chemical processes involved may provide a powerful tool for the simulation of early damage induction. The Geant4-DNA extension of the general purpose Monte Carlo Geant4 simulation toolkit aims to provide the scientific community with an open source access platform for the mechanistic simulation of such early damage. This paper presents the most recent review of the Geant4-DNA extension, as available to Geant4 users since June 2015 (release 10.2 Beta). In particular, the review includes the description of new physical models for the description of electron elastic and inelastic interactions in liquid water, as well as new examples dedicated to the simulation of physicochemical and chemical stages of water radiolysis. Several implementations of geometrical models of biological targets are presented as well, and the list of Geant4-DNA examples is described.</AbstractText>
<CopyrightInformation>Copyright © 2015 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.</CopyrightInformation>
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<ForeName>M A</ForeName>
<Initials>MA</Initials>
<AffiliationInfo><Affiliation>Instituto de Física Gleb Wataghin, Universidade Estadual de Campinas, SP, Brazil.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Bordage</LastName>
<ForeName>M C</ForeName>
<Initials>MC</Initials>
<AffiliationInfo><Affiliation>CRCT, UMR 1037 INSERM, Université Paul Sabatier, Toulouse, France; UMR 1037, CRCT, Univ. Toulouse III-Paul Sabatier, F-31000 Toulouse, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Brown</LastName>
<ForeName>J M C</ForeName>
<Initials>JMC</Initials>
<AffiliationInfo><Affiliation>School of Physics and Astronomy, Monash University, Melbourne, Australia; School of Mathematics and Physics, Queen's University Belfast, Belfast, UK.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Davídková</LastName>
<ForeName>M</ForeName>
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<AffiliationInfo><Affiliation>Department of Radiation Dosimetry, Nuclear Physics Institute of the CAS, Praha, Czech Republic.</Affiliation>
</AffiliationInfo>
</Author>
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<ForeName>E</ForeName>
<Initials>E</Initials>
<AffiliationInfo><Affiliation>CNRS/IN2P3, Laboratoire de Physique Corpusculaire, Clermont Université, UMR6533 Aubière, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>El Bitar</LastName>
<ForeName>Z</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>Institut Pluridisciplinaire Hubert Curien, Strasbourg, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Enger</LastName>
<ForeName>S A</ForeName>
<Initials>SA</Initials>
<AffiliationInfo><Affiliation>Medical Physics Unit, Department of Oncology, McGill University, Montreal, QC, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Francis</LastName>
<ForeName>Z</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>Department of Physics, Faculty of Sciences, Université Saint Joseph, Beirut, Lebanon.</Affiliation>
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<Author ValidYN="Y"><LastName>Guatelli</LastName>
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<Initials>S</Initials>
<AffiliationInfo><Affiliation>Centre for Medical Radiation Physics, University of Wollongong, NSW, Australia.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Ivanchenko</LastName>
<ForeName>V N</ForeName>
<Initials>VN</Initials>
<AffiliationInfo><Affiliation>Geant4 Associates International Ltd, United Kingdom; Ecoanalytica, 119899 Moscow, Russia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Karamitros</LastName>
<ForeName>M</ForeName>
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<AffiliationInfo><Affiliation>Notre Dame Radiation Laboratory, University of Notre Dame, Notre Dame, IN, United States.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Kyriakou</LastName>
<ForeName>I</ForeName>
<Initials>I</Initials>
<AffiliationInfo><Affiliation>Medical Physics Laboratory, University of Ioannina Medical School, Ioannina 45110, Greece.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Maigne</LastName>
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<AffiliationInfo><Affiliation>CNRS/IN2P3, Laboratoire de Physique Corpusculaire, Clermont Université, UMR6533 Aubière, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Meylan</LastName>
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<Initials>S</Initials>
<AffiliationInfo><Affiliation>IRSN, Institut de Radioprotection et de Sureté Nucléaire, BP17, 92962 Fontenay-aux-Roses, France.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Murakami</LastName>
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<AffiliationInfo><Affiliation>KEK, Tsukuba, Ibaraki, Japan.</Affiliation>
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<Author ValidYN="Y"><LastName>Okada</LastName>
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<AffiliationInfo><Affiliation>KEK, Tsukuba, Ibaraki, Japan.</Affiliation>
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<Author ValidYN="Y"><LastName>Payno</LastName>
<ForeName>H</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>CNRS/IN2P3, Laboratoire de Physique Corpusculaire, Clermont Université, UMR6533 Aubière, France.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Perrot</LastName>
<ForeName>Y</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>CNRS/IN2P3, Laboratoire de Physique Corpusculaire, Clermont Université, UMR6533 Aubière, France.</Affiliation>
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</Author>
<Author ValidYN="Y"><LastName>Petrovic</LastName>
<ForeName>I</ForeName>
<Initials>I</Initials>
<AffiliationInfo><Affiliation>Vinča Institute of Nuclear Sciences, University of Belgrade, Belgrade, Serbia.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Pham</LastName>
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<AffiliationInfo><Affiliation>CNRS/IN2P3, Laboratoire de Physique Corpusculaire, Clermont Université, UMR6533 Aubière, France.</Affiliation>
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<AffiliationInfo><Affiliation>Vinča Institute of Nuclear Sciences, University of Belgrade, Belgrade, Serbia.</Affiliation>
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</Author>
<Author ValidYN="Y"><LastName>Sasaki</LastName>
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<Initials>T</Initials>
<AffiliationInfo><Affiliation>KEK, Tsukuba, Ibaraki, Japan.</Affiliation>
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<Author ValidYN="Y"><LastName>Štěpán</LastName>
<ForeName>V</ForeName>
<Initials>V</Initials>
<AffiliationInfo><Affiliation>Department of Radiation Dosimetry, Nuclear Physics Institute of the CAS, Praha, Czech Republic.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Tran</LastName>
<ForeName>H N</ForeName>
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<AffiliationInfo><Affiliation>Division of Nuclear Physics, Ton Duc Thang University, Ho Chi Minh City, Viet Nam; Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City, Viet Nam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Villagrasa</LastName>
<ForeName>C</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>IRSN, Institut de Radioprotection et de Sureté Nucléaire, BP17, 92962 Fontenay-aux-Roses, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Incerti</LastName>
<ForeName>S</ForeName>
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<AffiliationInfo><Affiliation>Division of Nuclear Physics, Ton Duc Thang University, Ho Chi Minh City, Viet Nam; Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City, Viet Nam; Univ. Bordeaux, CENBG, UMR 5797, F-33170 Gradignan, France; CNRS, IN2P3, CENBG, UMR 5797, F-33170 Gradignan, France. Electronic address: sebastien.incerti@tdt.edu.vn.</Affiliation>
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