DArT whole genome profiling provides insights on the evolution and taxonomy of edible Banana (Musa spp.)
Identifieur interne : 003A94 ( Ncbi/Checkpoint ); précédent : 003A93; suivant : 003A95DArT whole genome profiling provides insights on the evolution and taxonomy of edible Banana (Musa spp.)
Auteurs : J. Sardos [France] ; X. Perrier [France] ; J. Doležel [République tchèque] ; E. H Ibová [République tchèque] ; P. Christelová [République tchèque] ; I. Van Den Houwe [Belgique] ; A. Kilian [Australie] ; N. Roux [France]Source :
- Annals of Botany [ 0305-7364 ] ; 2016.
Descripteurs français
- KwdFr :
- MESH :
- génétique : ADN des plantes, Génome végétal, Marqueurs génétiques, Musa.
- isolement et purification : ADN des plantes.
- Amélioration des plantes, Analyse de séquence d'ADN, Biodiversité, Musa, Séquençage par oligonucléotides en batterie, Évolution biologique.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Plant, Genetic Markers.
- chemical , isolation & purification : DNA, Plant.
- classification : Musa.
- genetics : Genome, Plant, Musa.
- Biodiversity, Biological Evolution, Oligonucleotide Array Sequence Analysis, Plant Breeding, Sequence Analysis, DNA.
Abstract
Url:
DOI: 10.1093/aob/mcw170
PubMed: 27590334
PubMed Central: 5155597
Affiliations:
- Australie, Belgique, France, République tchèque
- Languedoc-Roussillon, Occitanie (région administrative), Province du Brabant flamand
- Heverlee, Louvain, Montpellier
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Links to Exploration step
PMC:5155597Le document en format XML
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<series><title level="j">Annals of Botany</title>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Biodiversity</term>
<term>Biological Evolution</term>
<term>DNA, Plant (genetics)</term>
<term>DNA, Plant (isolation & purification)</term>
<term>Genetic Markers (genetics)</term>
<term>Genome, Plant (genetics)</term>
<term>Musa (classification)</term>
<term>Musa (genetics)</term>
<term>Oligonucleotide Array Sequence Analysis</term>
<term>Plant Breeding</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ADN des plantes (génétique)</term>
<term>ADN des plantes (isolement et purification)</term>
<term>Amélioration des plantes</term>
<term>Analyse de séquence d'ADN</term>
<term>Biodiversité</term>
<term>Génome végétal (génétique)</term>
<term>Marqueurs génétiques (génétique)</term>
<term>Musa ()</term>
<term>Musa (génétique)</term>
<term>Séquençage par oligonucléotides en batterie</term>
<term>Évolution biologique</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Plant</term>
<term>Genetic Markers</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en"><term>DNA, Plant</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Musa</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Genome, Plant</term>
<term>Musa</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN des plantes</term>
<term>Génome végétal</term>
<term>Marqueurs génétiques</term>
<term>Musa</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>ADN des plantes</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Biodiversity</term>
<term>Biological Evolution</term>
<term>Oligonucleotide Array Sequence Analysis</term>
<term>Plant Breeding</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Amélioration des plantes</term>
<term>Analyse de séquence d'ADN</term>
<term>Biodiversité</term>
<term>Musa</term>
<term>Séquençage par oligonucléotides en batterie</term>
<term>Évolution biologique</term>
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<front><div type="abstract" xml:lang="en"><p><bold>Background and Aims</bold>
Dessert and cooking bananas are vegetatively propagated crops of great importance for both the subsistence and the livelihood of people in developing countries. A wide diversity of diploid and triploid cultivars including AA, AB, AS, AT, AAA, AAB, ABB, AAS and AAT genomic constitutions exists. Within each of this genome groups, cultivars are classified into subgroups that are reported to correspond to varieties clonally derived from each other after a single sexual event. The number of those founding events at the basis of the diversity of bananas is a matter of debate.</p>
<p><bold>Methods</bold>
We analysed a large panel of 575 accessions, 94 wild relatives and 481 cultivated accessions belonging to the section <italic>Musa</italic>
with a set of 498 DArT markers previously developed.</p>
<p><bold>Key Results</bold>
DArT appeared successful and accurate to describe <italic>Musa</italic>
diversity and help in the resolution of cultivated banana genome constitution and taxonomy, and highlighted discrepancies in the acknowledged classification of some accessions. This study also argues for at least two centres of domestication corresponding to South-East Asia and New Guinea, respectively. Banana domestication in New Guinea probably followed different schemes that those previously reported where hybridization underpins the emergence of edible banana. In addition, our results suggest that not all wild ancestors of bananas are known, especially in <italic>M. acuminata</italic>
subspecies. We also estimate the extent of the two consecutive bottlenecks in edible bananas by evaluating the number of sexual founding events underlying our sets of edible diploids and triploids, respectively.</p>
<p><bold>Conclusions</bold>
The attribution of clone identity to each sample of the sets allowed the detection of subgroups represented by several sets of clones. Although morphological characterization of some of the accessions is needed to correct potentially erroneous classifications, some of the subgroups seem polyclonal.</p>
</div>
</front>
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