DArT whole genome profiling provides insights on the evolution and taxonomy of edible Banana (Musa spp.).
Identifieur interne : 001518 ( PubMed/Curation ); précédent : 001517; suivant : 001519DArT whole genome profiling provides insights on the evolution and taxonomy of edible Banana (Musa spp.).
Auteurs : J. Sardos ; X. Perrier [France] ; J. Doležel [République tchèque] ; E. H Ibová [République tchèque] ; P. Christelová [République tchèque] ; I. Van Den Houwe [Belgique] ; A. Kilian [Australie] ; N. Roux [France]Source :
- Annals of botany [ 1095-8290 ] ; 2016.
Descripteurs français
- KwdFr :
- MESH :
- génétique : ADN des plantes, Génome végétal, Marqueurs génétiques, Musa.
- isolement et purification : ADN des plantes.
- Amélioration des plantes, Analyse de séquence d'ADN, Biodiversité, Musa, Séquençage par oligonucléotides en batterie, Évolution biologique.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Plant, Genetic Markers.
- chemical , isolation & purification : DNA, Plant.
- classification : Musa.
- genetics : Genome, Plant, Musa.
- Biodiversity, Biological Evolution, Oligonucleotide Array Sequence Analysis, Plant Breeding, Sequence Analysis, DNA.
Abstract
Dessert and cooking bananas are vegetatively propagated crops of great importance for both the subsistence and the livelihood of people in developing countries. A wide diversity of diploid and triploid cultivars including AA, AB, AS, AT, AAA, AAB, ABB, AAS and AAT genomic constitutions exists. Within each of this genome groups, cultivars are classified into subgroups that are reported to correspond to varieties clonally derived from each other after a single sexual event. The number of those founding events at the basis of the diversity of bananas is a matter of debate.
DOI: 10.1093/aob/mcw170
PubMed: 27590334
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J. Sardos<affiliation><nlm:affiliation>Bioversity International, Parc Scientifique Agropolis II, 1990 boulevard de la Lironde, 34397 Montpellier Cedex 5, France j.sardos@cgiar.org.</nlm:affiliation>
<wicri:noCountry code="subField">France j.sardos@cgiar.org.</wicri:noCountry>
</affiliation>
Le document en format XML
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<term>Biological Evolution</term>
<term>DNA, Plant (genetics)</term>
<term>DNA, Plant (isolation & purification)</term>
<term>Genetic Markers (genetics)</term>
<term>Genome, Plant (genetics)</term>
<term>Musa (classification)</term>
<term>Musa (genetics)</term>
<term>Oligonucleotide Array Sequence Analysis</term>
<term>Plant Breeding</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ADN des plantes (génétique)</term>
<term>ADN des plantes (isolement et purification)</term>
<term>Amélioration des plantes</term>
<term>Analyse de séquence d'ADN</term>
<term>Biodiversité</term>
<term>Génome végétal (génétique)</term>
<term>Marqueurs génétiques (génétique)</term>
<term>Musa ()</term>
<term>Musa (génétique)</term>
<term>Séquençage par oligonucléotides en batterie</term>
<term>Évolution biologique</term>
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<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Plant</term>
<term>Genetic Markers</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en"><term>DNA, Plant</term>
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<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Genome, Plant</term>
<term>Musa</term>
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<term>Génome végétal</term>
<term>Marqueurs génétiques</term>
<term>Musa</term>
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<term>Oligonucleotide Array Sequence Analysis</term>
<term>Plant Breeding</term>
<term>Sequence Analysis, DNA</term>
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<term>Analyse de séquence d'ADN</term>
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<front><div type="abstract" xml:lang="en">Dessert and cooking bananas are vegetatively propagated crops of great importance for both the subsistence and the livelihood of people in developing countries. A wide diversity of diploid and triploid cultivars including AA, AB, AS, AT, AAA, AAB, ABB, AAS and AAT genomic constitutions exists. Within each of this genome groups, cultivars are classified into subgroups that are reported to correspond to varieties clonally derived from each other after a single sexual event. The number of those founding events at the basis of the diversity of bananas is a matter of debate.</div>
</front>
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<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">27590334</PMID>
<DateCreated><Year>2016</Year>
<Month>09</Month>
<Day>03</Day>
</DateCreated>
<DateCompleted><Year>2017</Year>
<Month>08</Month>
<Day>21</Day>
</DateCompleted>
<DateRevised><Year>2017</Year>
<Month>08</Month>
<Day>21</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1095-8290</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>118</Volume>
<Issue>7</Issue>
<PubDate><Year>2016</Year>
<Month>Dec</Month>
</PubDate>
</JournalIssue>
<Title>Annals of botany</Title>
<ISOAbbreviation>Ann. Bot.</ISOAbbreviation>
</Journal>
<ArticleTitle>DArT whole genome profiling provides insights on the evolution and taxonomy of edible Banana (Musa spp.).</ArticleTitle>
<Pagination><MedlinePgn>1269-1278</MedlinePgn>
</Pagination>
<Abstract><AbstractText Label="BACKGROUND AND AIMS" NlmCategory="OBJECTIVE">Dessert and cooking bananas are vegetatively propagated crops of great importance for both the subsistence and the livelihood of people in developing countries. A wide diversity of diploid and triploid cultivars including AA, AB, AS, AT, AAA, AAB, ABB, AAS and AAT genomic constitutions exists. Within each of this genome groups, cultivars are classified into subgroups that are reported to correspond to varieties clonally derived from each other after a single sexual event. The number of those founding events at the basis of the diversity of bananas is a matter of debate.</AbstractText>
<AbstractText Label="METHODS" NlmCategory="METHODS">We analysed a large panel of 575 accessions, 94 wild relatives and 481 cultivated accessions belonging to the section Musa with a set of 498 DArT markers previously developed.</AbstractText>
<AbstractText Label="KEY RESULTS" NlmCategory="RESULTS">DArT appeared successful and accurate to describe Musa diversity and help in the resolution of cultivated banana genome constitution and taxonomy, and highlighted discrepancies in the acknowledged classification of some accessions. This study also argues for at least two centres of domestication corresponding to South-East Asia and New Guinea, respectively. Banana domestication in New Guinea probably followed different schemes that those previously reported where hybridization underpins the emergence of edible banana. In addition, our results suggest that not all wild ancestors of bananas are known, especially in M. acuminata subspecies. We also estimate the extent of the two consecutive bottlenecks in edible bananas by evaluating the number of sexual founding events underlying our sets of edible diploids and triploids, respectively.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">The attribution of clone identity to each sample of the sets allowed the detection of subgroups represented by several sets of clones. Although morphological characterization of some of the accessions is needed to correct potentially erroneous classifications, some of the subgroups seem polyclonal.</AbstractText>
<CopyrightInformation>© The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Sardos</LastName>
<ForeName>J</ForeName>
<Initials>J</Initials>
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<ForeName>J</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, 78371 Olomouc, Czech Republic.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Hřibová</LastName>
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</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Christelová</LastName>
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<AffiliationInfo><Affiliation>Bioversity International, Willem De Croylaan 42, 3001 Leuven, Belgium.</Affiliation>
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<Author ValidYN="Y"><LastName>Kilian</LastName>
<ForeName>A</ForeName>
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<AffiliationInfo><Affiliation>Diversity Arrays Technology Pty Ltd, Building 3, University of Canberra, Bruce, ACT 2617, Australia.</Affiliation>
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<Author ValidYN="Y"><LastName>Roux</LastName>
<ForeName>N</ForeName>
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<AffiliationInfo><Affiliation>Bioversity International, Parc Scientifique Agropolis II, 1990 boulevard de la Lironde, 34397 Montpellier Cedex 5, France.</Affiliation>
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</CommentsCorrectionsList>
<MeshHeadingList><MeshHeading><DescriptorName UI="D044822" MajorTopicYN="N">Biodiversity</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005075" MajorTopicYN="N">Biological Evolution</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018744" MajorTopicYN="N">DNA, Plant</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D028521" MajorTopicYN="N">Musa</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020411" MajorTopicYN="N">Oligonucleotide Array Sequence Analysis</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000069600" MajorTopicYN="N">Plant Breeding</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">DArT</Keyword>
<Keyword MajorTopicYN="N">Musa acuminata</Keyword>
<Keyword MajorTopicYN="N">Musa balbisiana</Keyword>
<Keyword MajorTopicYN="N">Musa spp.</Keyword>
<Keyword MajorTopicYN="N">banana</Keyword>
<Keyword MajorTopicYN="N">classification</Keyword>
<Keyword MajorTopicYN="N">domestication</Keyword>
<Keyword MajorTopicYN="N">taxonomy</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year>
<Month>02</Month>
<Day>19</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="revised"><Year>2016</Year>
<Month>04</Month>
<Day>20</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2016</Year>
<Month>06</Month>
<Day>17</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2016</Year>
<Month>9</Month>
<Day>4</Day>
<Hour>6</Hour>
<Minute>0</Minute>
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<PubMedPubDate PubStatus="medline"><Year>2017</Year>
<Month>8</Month>
<Day>22</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2016</Year>
<Month>9</Month>
<Day>4</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">27590334</ArticleId>
<ArticleId IdType="pii">mcw170</ArticleId>
<ArticleId IdType="doi">10.1093/aob/mcw170</ArticleId>
<ArticleId IdType="pmc">PMC5155597</ArticleId>
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