Criteria for Annotation of Plant MicroRNAs
Identifieur interne : 008E65 ( Main/Merge ); précédent : 008E64; suivant : 008E66Criteria for Annotation of Plant MicroRNAs
Auteurs : Blake C. Meyers [États-Unis] ; Michael J. Axtell [États-Unis] ; Bonnie Bartel [États-Unis] ; David P. Bartel [États-Unis] ; David Baulcombe [Royaume-Uni] ; John L. Bowman [Australie] ; Xiaofeng Cao [République populaire de Chine] ; James C. Carrington [États-Unis] ; Xuemei Chen [États-Unis] ; Pamela J. Green [États-Unis] ; Sam Griffiths-Jones [Royaume-Uni] ; Steven E. Jacobsen [États-Unis] ; Allison C. Mallory [France] ; Robert A. Martienssen [États-Unis] ; R. Scott Poethig [États-Unis] ; Yijun Qi [République populaire de Chine] ; Herve Vaucheret [France] ; Olivier Voinnet [France] ; Yuichiro Watanabe [Japon] ; Detlef Weigel [Allemagne] ; Jian-Kang Zhu [États-Unis]Source :
- The Plant Cell [ 1040-4651 ] ; 2008.
Abstract
MicroRNAs (miRNAs) are ∼21 nucleotide noncoding RNAs produced by Dicer-catalyzed excision from stem-loop precursors. Many plant miRNAs play critical roles in development, nutrient homeostasis, abiotic stress responses, and pathogen responses via interactions with specific target mRNAs. miRNAs are not the only Dicer-derived small RNAs produced by plants: A substantial amount of the total small RNA abundance and an overwhelming amount of small RNA sequence diversity is contributed by distinct classes of 21- to 24-nucleotide short interfering RNAs. This fact, coupled with the rapidly increasing rate of plant small RNA discovery, demands an increased rigor in miRNA annotations. Herein, we update the specific criteria required for the annotation of plant miRNAs, including experimental and computational data, as well as refinements to standard nomenclature.
Url:
DOI: 10.1105/tpc.108.064311
PubMed: 19074682
PubMed Central: 2630443
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PMC:2630443Le document en format XML
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<author><name sortKey="Jacobsen, Steven E" sort="Jacobsen, Steven E" uniqKey="Jacobsen S" first="Steven E." last="Jacobsen">Steven E. Jacobsen</name>
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<author><name sortKey="Mallory, Allison C" sort="Mallory, Allison C" uniqKey="Mallory A" first="Allison C." last="Mallory">Allison C. Mallory</name>
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<country xml:lang="fr">France</country>
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<wicri:cityArea>Cold Spring Harbor Laboratory, Cold Spring Harbor</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Poethig, R Scott" sort="Poethig, R Scott" uniqKey="Poethig R" first="R. Scott" last="Poethig">R. Scott Poethig</name>
<affiliation wicri:level="2"><nlm:aff id="aff14">Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Pennsylvanie</region>
</placeName>
<wicri:cityArea>Department of Biology, University of Pennsylvania, Philadelphia</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Qi, Yijun" sort="Qi, Yijun" uniqKey="Qi Y" first="Yijun" last="Qi">Yijun Qi</name>
<affiliation wicri:level="1"><nlm:aff id="aff15">National Institute of Biological Sciences, Zhongguancun Life Science Park, Beijing 102206, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Institute of Biological Sciences, Zhongguancun Life Science Park, Beijing 102206</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Vaucheret, Herve" sort="Vaucheret, Herve" uniqKey="Vaucheret H" first="Herve" last="Vaucheret">Herve Vaucheret</name>
<affiliation wicri:level="1"><nlm:aff id="aff12">Laboratoire de Biologie Cellulaire, Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique, 78026 Versailles Cedex, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire de Biologie Cellulaire, Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique, 78026 Versailles Cedex</wicri:regionArea>
<wicri:noRegion>78026 Versailles Cedex</wicri:noRegion>
<wicri:noRegion>78026 Versailles Cedex</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Voinnet, Olivier" sort="Voinnet, Olivier" uniqKey="Voinnet O" first="Olivier" last="Voinnet">Olivier Voinnet</name>
<affiliation wicri:level="1"><nlm:aff id="aff16">Institut de Biologie Moleculaire des Plantes du Centre National de la Recherche Scientifique 12, 67084 Strasbourg Cedex, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Institut de Biologie Moleculaire des Plantes du Centre National de la Recherche Scientifique 12, 67084 Strasbourg Cedex</wicri:regionArea>
<wicri:noRegion>67084 Strasbourg Cedex</wicri:noRegion>
<wicri:noRegion>67084 Strasbourg Cedex</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Watanabe, Yuichiro" sort="Watanabe, Yuichiro" uniqKey="Watanabe Y" first="Yuichiro" last="Watanabe">Yuichiro Watanabe</name>
<affiliation wicri:level="4"><nlm:aff id="aff17">Department of Life Sciences, University of Tokyo, Meguro, Tokyo 153-8902, Japan</nlm:aff>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Department of Life Sciences, University of Tokyo, Meguro, Tokyo 153-8902</wicri:regionArea>
<placeName><settlement type="city">Tokyo</settlement>
<region type="région">Région de Kantō</region>
<settlement type="city">Tokyo</settlement>
</placeName>
<orgName type="university">Université de Tokyo</orgName>
</affiliation>
</author>
<author><name sortKey="Weigel, Detlef" sort="Weigel, Detlef" uniqKey="Weigel D" first="Detlef" last="Weigel">Detlef Weigel</name>
<affiliation wicri:level="1"><nlm:aff id="aff18">Department of Molecular Biology, Max Planck Institute for Developmental Biology, D-72076 Tübingen, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Department of Molecular Biology, Max Planck Institute for Developmental Biology, D-72076 Tübingen</wicri:regionArea>
<wicri:noRegion>72076 Tübingen</wicri:noRegion>
<wicri:noRegion>72076 Tübingen</wicri:noRegion>
<wicri:noRegion>D-72076 Tübingen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhu, Jian Kang" sort="Zhu, Jian Kang" uniqKey="Zhu J" first="Jian-Kang" last="Zhu">Jian-Kang Zhu</name>
<affiliation wicri:level="2"><nlm:aff id="aff9">Department of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, California 92521</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Californie</region>
</placeName>
<wicri:cityArea>Department of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside</wicri:cityArea>
</affiliation>
</author>
</analytic>
<series><title level="j">The Plant Cell</title>
<idno type="ISSN">1040-4651</idno>
<idno type="eISSN">1532-298X</idno>
<imprint><date when="2008">2008</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>MicroRNAs (miRNAs) are ∼21 nucleotide noncoding RNAs produced by Dicer-catalyzed excision from stem-loop precursors. Many plant miRNAs play critical roles in development, nutrient homeostasis, abiotic stress responses, and pathogen responses via interactions with specific target mRNAs. miRNAs are not the only Dicer-derived small RNAs produced by plants: A substantial amount of the total small RNA abundance and an overwhelming amount of small RNA sequence diversity is contributed by distinct classes of 21- to 24-nucleotide short interfering RNAs. This fact, coupled with the rapidly increasing rate of plant small RNA discovery, demands an increased rigor in miRNA annotations. Herein, we update the specific criteria required for the annotation of plant miRNAs, including experimental and computational data, as well as refinements to standard nomenclature.</p>
</div>
</front>
</TEI>
</record>
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