Criteria for Annotation of Plant MicroRNAs
Identifieur interne : 000D89 ( Pmc/Curation ); précédent : 000D88; suivant : 000D90Criteria for Annotation of Plant MicroRNAs
Auteurs : Blake C. Meyers [États-Unis] ; Michael J. Axtell [États-Unis] ; Bonnie Bartel [États-Unis] ; David P. Bartel [États-Unis] ; David Baulcombe [Royaume-Uni] ; John L. Bowman [Australie] ; Xiaofeng Cao [République populaire de Chine] ; James C. Carrington [États-Unis] ; Xuemei Chen [États-Unis] ; Pamela J. Green [États-Unis] ; Sam Griffiths-Jones [Royaume-Uni] ; Steven E. Jacobsen [États-Unis] ; Allison C. Mallory [France] ; Robert A. Martienssen [États-Unis] ; R. Scott Poethig [États-Unis] ; Yijun Qi [République populaire de Chine] ; Herve Vaucheret [France] ; Olivier Voinnet [France] ; Yuichiro Watanabe [Japon] ; Detlef Weigel [Allemagne] ; Jian-Kang Zhu [États-Unis]Source :
- The Plant Cell [ 1040-4651 ] ; 2008.
Abstract
MicroRNAs (miRNAs) are ∼21 nucleotide noncoding RNAs produced by Dicer-catalyzed excision from stem-loop precursors. Many plant miRNAs play critical roles in development, nutrient homeostasis, abiotic stress responses, and pathogen responses via interactions with specific target mRNAs. miRNAs are not the only Dicer-derived small RNAs produced by plants: A substantial amount of the total small RNA abundance and an overwhelming amount of small RNA sequence diversity is contributed by distinct classes of 21- to 24-nucleotide short interfering RNAs. This fact, coupled with the rapidly increasing rate of plant small RNA discovery, demands an increased rigor in miRNA annotations. Herein, we update the specific criteria required for the annotation of plant miRNAs, including experimental and computational data, as well as refinements to standard nomenclature.
Url:
DOI: 10.1105/tpc.108.064311
PubMed: 19074682
PubMed Central: 2630443
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Green</name><affiliation wicri:level="2"><nlm:aff id="aff1">Department of Plant and Soil Sciences, Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19711</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Delaware</region></placeName><wicri:cityArea>Department of Plant and Soil Sciences, Delaware Biotechnology Institute, University of Delaware, Newark</wicri:cityArea></affiliation></author><author><name sortKey="Griffiths Jones, Sam" sort="Griffiths Jones, Sam" uniqKey="Griffiths Jones S" first="Sam" last="Griffiths-Jones">Sam Griffiths-Jones</name><affiliation wicri:level="1"><nlm:aff id="aff10">Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Faculty of Life Sciences, University of Manchester, Manchester M13 9PT</wicri:regionArea></affiliation></author><author><name sortKey="Jacobsen, Steven E" sort="Jacobsen, Steven E" uniqKey="Jacobsen S" first="Steven E." last="Jacobsen">Steven E. 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Mallory</name><affiliation wicri:level="1"><nlm:aff id="aff12">Laboratoire de Biologie Cellulaire, Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique, 78026 Versailles Cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Laboratoire de Biologie Cellulaire, Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique, 78026 Versailles Cedex</wicri:regionArea></affiliation></author><author><name sortKey="Martienssen, Robert A" sort="Martienssen, Robert A" uniqKey="Martienssen R" first="Robert A." last="Martienssen">Robert A. Martienssen</name><affiliation wicri:level="2"><nlm:aff id="aff13">Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Cold Spring Harbor Laboratory, Cold Spring Harbor</wicri:cityArea></affiliation></author><author><name sortKey="Poethig, R Scott" sort="Poethig, R Scott" uniqKey="Poethig R" first="R. Scott" last="Poethig">R. Scott Poethig</name><affiliation wicri:level="2"><nlm:aff id="aff14">Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Pennsylvanie</region></placeName><wicri:cityArea>Department of Biology, University of Pennsylvania, Philadelphia</wicri:cityArea></affiliation></author><author><name sortKey="Qi, Yijun" sort="Qi, Yijun" uniqKey="Qi Y" first="Yijun" last="Qi">Yijun Qi</name><affiliation wicri:level="1"><nlm:aff id="aff15">National Institute of Biological Sciences, Zhongguancun Life Science Park, Beijing 102206, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Institute of Biological Sciences, Zhongguancun Life Science Park, Beijing 102206</wicri:regionArea></affiliation></author><author><name sortKey="Vaucheret, Herve" sort="Vaucheret, Herve" uniqKey="Vaucheret H" first="Herve" last="Vaucheret">Herve Vaucheret</name><affiliation wicri:level="1"><nlm:aff id="aff12">Laboratoire de Biologie Cellulaire, Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique, 78026 Versailles Cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Laboratoire de Biologie Cellulaire, Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique, 78026 Versailles Cedex</wicri:regionArea></affiliation></author><author><name sortKey="Voinnet, Olivier" sort="Voinnet, Olivier" uniqKey="Voinnet O" first="Olivier" last="Voinnet">Olivier Voinnet</name><affiliation wicri:level="1"><nlm:aff id="aff16">Institut de Biologie Moleculaire des Plantes du Centre National de la Recherche Scientifique 12, 67084 Strasbourg Cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie Moleculaire des Plantes du Centre National de la Recherche Scientifique 12, 67084 Strasbourg Cedex</wicri:regionArea></affiliation></author><author><name sortKey="Watanabe, Yuichiro" sort="Watanabe, Yuichiro" uniqKey="Watanabe Y" first="Yuichiro" last="Watanabe">Yuichiro Watanabe</name><affiliation wicri:level="1"><nlm:aff id="aff17">Department of Life Sciences, University of Tokyo, Meguro, Tokyo 153-8902, Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>Department of Life Sciences, University of Tokyo, Meguro, Tokyo 153-8902</wicri:regionArea></affiliation></author><author><name sortKey="Weigel, Detlef" sort="Weigel, Detlef" uniqKey="Weigel D" first="Detlef" last="Weigel">Detlef Weigel</name><affiliation wicri:level="1"><nlm:aff id="aff18">Department of Molecular Biology, Max Planck Institute for Developmental Biology, D-72076 Tübingen, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Molecular Biology, Max Planck Institute for Developmental Biology, D-72076 Tübingen</wicri:regionArea></affiliation></author><author><name sortKey="Zhu, Jian Kang" sort="Zhu, Jian Kang" uniqKey="Zhu J" first="Jian-Kang" last="Zhu">Jian-Kang Zhu</name><affiliation wicri:level="2"><nlm:aff id="aff9">Department of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, California 92521</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>Department of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside</wicri:cityArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">19074682</idno><idno type="pmc">2630443</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2630443</idno><idno type="RBID">PMC:2630443</idno><idno type="doi">10.1105/tpc.108.064311</idno><date when="2008">2008</date><idno type="wicri:Area/Pmc/Corpus">000F28</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000F28</idno><idno type="wicri:Area/Pmc/Curation">000D89</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000D89</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Criteria for Annotation of Plant MicroRNAs</title><author><name sortKey="Meyers, Blake C" sort="Meyers, Blake C" uniqKey="Meyers B" first="Blake C." last="Meyers">Blake C. Meyers</name><affiliation wicri:level="2"><nlm:aff id="aff1">Department of Plant and Soil Sciences, Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19711</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Delaware</region></placeName><wicri:cityArea>Department of Plant and Soil Sciences, Delaware Biotechnology Institute, University of Delaware, Newark</wicri:cityArea></affiliation></author><author><name sortKey="Axtell, Michael J" sort="Axtell, Michael J" uniqKey="Axtell M" first="Michael J." last="Axtell">Michael J. Axtell</name><affiliation wicri:level="2"><nlm:aff id="aff2">Department of Biology and Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Pennsylvanie</region></placeName><wicri:cityArea>Department of Biology and Huck Institutes of the Life Sciences, Pennsylvania State University, University Park</wicri:cityArea></affiliation></author><author><name sortKey="Bartel, Bonnie" sort="Bartel, Bonnie" uniqKey="Bartel B" first="Bonnie" last="Bartel">Bonnie Bartel</name><affiliation wicri:level="2"><nlm:aff id="aff3">Department of Biochemistry and Cell Biology, Rice University, Houston, Texas 77005</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Texas</region></placeName><wicri:cityArea>Department of Biochemistry and Cell Biology, Rice University, Houston</wicri:cityArea></affiliation></author><author><name sortKey="Bartel, David P" sort="Bartel, David P" uniqKey="Bartel D" first="David P." last="Bartel">David P. Bartel</name><affiliation wicri:level="2"><nlm:aff id="aff4">Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Whitehead Institute, Cambridge, Massachusetts 02142</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Massachusetts</region></placeName><wicri:cityArea>Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Whitehead Institute, Cambridge</wicri:cityArea></affiliation></author><author><name sortKey="Baulcombe, David" sort="Baulcombe, David" uniqKey="Baulcombe D" first="David" last="Baulcombe">David Baulcombe</name><affiliation wicri:level="1"><nlm:aff id="aff5">Plant Sciences Department, Cambridge University, Cambridge CB2 3EA, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Plant Sciences Department, Cambridge University, Cambridge CB2 3EA</wicri:regionArea></affiliation></author><author><name sortKey="Bowman, John L" sort="Bowman, John L" uniqKey="Bowman J" first="John L." last="Bowman">John L. Bowman</name><affiliation wicri:level="1"><nlm:aff id="aff6">School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>School of Biological Sciences, Monash University, Melbourne VIC 3800</wicri:regionArea></affiliation></author><author><name sortKey="Cao, Xiaofeng" sort="Cao, Xiaofeng" uniqKey="Cao X" first="Xiaofeng" last="Cao">Xiaofeng Cao</name><affiliation wicri:level="1"><nlm:aff id="aff7">Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101</wicri:regionArea></affiliation></author><author><name sortKey="Carrington, James C" sort="Carrington, James C" uniqKey="Carrington J" first="James C." last="Carrington">James C. Carrington</name><affiliation wicri:level="2"><nlm:aff id="aff8">Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Oregon</region></placeName><wicri:cityArea>Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis</wicri:cityArea></affiliation></author><author><name sortKey="Chen, Xuemei" sort="Chen, Xuemei" uniqKey="Chen X" first="Xuemei" last="Chen">Xuemei Chen</name><affiliation wicri:level="2"><nlm:aff id="aff9">Department of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, California 92521</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>Department of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside</wicri:cityArea></affiliation></author><author><name sortKey="Green, Pamela J" sort="Green, Pamela J" uniqKey="Green P" first="Pamela J." last="Green">Pamela J. Green</name><affiliation wicri:level="2"><nlm:aff id="aff1">Department of Plant and Soil Sciences, Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19711</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Delaware</region></placeName><wicri:cityArea>Department of Plant and Soil Sciences, Delaware Biotechnology Institute, University of Delaware, Newark</wicri:cityArea></affiliation></author><author><name sortKey="Griffiths Jones, Sam" sort="Griffiths Jones, Sam" uniqKey="Griffiths Jones S" first="Sam" last="Griffiths-Jones">Sam Griffiths-Jones</name><affiliation wicri:level="1"><nlm:aff id="aff10">Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Faculty of Life Sciences, University of Manchester, Manchester M13 9PT</wicri:regionArea></affiliation></author><author><name sortKey="Jacobsen, Steven E" sort="Jacobsen, Steven E" uniqKey="Jacobsen S" first="Steven E." last="Jacobsen">Steven E. Jacobsen</name><affiliation wicri:level="2"><nlm:aff id="aff11">Howard Hughes Medical Institute, Department of Molecular, Cell, and Developmental Biology, University of California, Los Angeles, California 90095</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>Howard Hughes Medical Institute, Department of Molecular, Cell, and Developmental Biology, University of California, Los Angeles</wicri:cityArea></affiliation></author><author><name sortKey="Mallory, Allison C" sort="Mallory, Allison C" uniqKey="Mallory A" first="Allison C." last="Mallory">Allison C. Mallory</name><affiliation wicri:level="1"><nlm:aff id="aff12">Laboratoire de Biologie Cellulaire, Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique, 78026 Versailles Cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Laboratoire de Biologie Cellulaire, Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique, 78026 Versailles Cedex</wicri:regionArea></affiliation></author><author><name sortKey="Martienssen, Robert A" sort="Martienssen, Robert A" uniqKey="Martienssen R" first="Robert A." last="Martienssen">Robert A. Martienssen</name><affiliation wicri:level="2"><nlm:aff id="aff13">Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Cold Spring Harbor Laboratory, Cold Spring Harbor</wicri:cityArea></affiliation></author><author><name sortKey="Poethig, R Scott" sort="Poethig, R Scott" uniqKey="Poethig R" first="R. Scott" last="Poethig">R. Scott Poethig</name><affiliation wicri:level="2"><nlm:aff id="aff14">Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Pennsylvanie</region></placeName><wicri:cityArea>Department of Biology, University of Pennsylvania, Philadelphia</wicri:cityArea></affiliation></author><author><name sortKey="Qi, Yijun" sort="Qi, Yijun" uniqKey="Qi Y" first="Yijun" last="Qi">Yijun Qi</name><affiliation wicri:level="1"><nlm:aff id="aff15">National Institute of Biological Sciences, Zhongguancun Life Science Park, Beijing 102206, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Institute of Biological Sciences, Zhongguancun Life Science Park, Beijing 102206</wicri:regionArea></affiliation></author><author><name sortKey="Vaucheret, Herve" sort="Vaucheret, Herve" uniqKey="Vaucheret H" first="Herve" last="Vaucheret">Herve Vaucheret</name><affiliation wicri:level="1"><nlm:aff id="aff12">Laboratoire de Biologie Cellulaire, Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique, 78026 Versailles Cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Laboratoire de Biologie Cellulaire, Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique, 78026 Versailles Cedex</wicri:regionArea></affiliation></author><author><name sortKey="Voinnet, Olivier" sort="Voinnet, Olivier" uniqKey="Voinnet O" first="Olivier" last="Voinnet">Olivier Voinnet</name><affiliation wicri:level="1"><nlm:aff id="aff16">Institut de Biologie Moleculaire des Plantes du Centre National de la Recherche Scientifique 12, 67084 Strasbourg Cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie Moleculaire des Plantes du Centre National de la Recherche Scientifique 12, 67084 Strasbourg Cedex</wicri:regionArea></affiliation></author><author><name sortKey="Watanabe, Yuichiro" sort="Watanabe, Yuichiro" uniqKey="Watanabe Y" first="Yuichiro" last="Watanabe">Yuichiro Watanabe</name><affiliation wicri:level="1"><nlm:aff id="aff17">Department of Life Sciences, University of Tokyo, Meguro, Tokyo 153-8902, Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>Department of Life Sciences, University of Tokyo, Meguro, Tokyo 153-8902</wicri:regionArea></affiliation></author><author><name sortKey="Weigel, Detlef" sort="Weigel, Detlef" uniqKey="Weigel D" first="Detlef" last="Weigel">Detlef Weigel</name><affiliation wicri:level="1"><nlm:aff id="aff18">Department of Molecular Biology, Max Planck Institute for Developmental Biology, D-72076 Tübingen, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Molecular Biology, Max Planck Institute for Developmental Biology, D-72076 Tübingen</wicri:regionArea></affiliation></author><author><name sortKey="Zhu, Jian Kang" sort="Zhu, Jian Kang" uniqKey="Zhu J" first="Jian-Kang" last="Zhu">Jian-Kang Zhu</name><affiliation wicri:level="2"><nlm:aff id="aff9">Department of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, California 92521</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>Department of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside</wicri:cityArea></affiliation></author></analytic><series><title level="j">The Plant Cell</title><idno type="ISSN">1040-4651</idno><idno type="eISSN">1532-298X</idno><imprint><date when="2008">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>MicroRNAs (miRNAs) are ∼21 nucleotide noncoding RNAs produced by Dicer-catalyzed excision from stem-loop precursors. Many plant miRNAs play critical roles in development, nutrient homeostasis, abiotic stress responses, and pathogen responses via interactions with specific target mRNAs. miRNAs are not the only Dicer-derived small RNAs produced by plants: A substantial amount of the total small RNA abundance and an overwhelming amount of small RNA sequence diversity is contributed by distinct classes of 21- to 24-nucleotide short interfering RNAs. This fact, coupled with the rapidly increasing rate of plant small RNA discovery, demands an increased rigor in miRNA annotations. Herein, we update the specific criteria required for the annotation of plant miRNAs, including experimental and computational data, as well as refinements to standard nomenclature.</p></div></front></TEI><pmc article-type="editorial"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Plant Cell</journal-id><journal-id journal-id-type="publisher-id">plantcell</journal-id><journal-title>The Plant Cell</journal-title><issn pub-type="ppub">1040-4651</issn><issn pub-type="epub">1532-298X</issn><publisher><publisher-name>American Society of Plant Biologists</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">19074682</article-id><article-id pub-id-type="pmc">2630443</article-id><article-id pub-id-type="publisher-id">064311</article-id><article-id pub-id-type="doi">10.1105/tpc.108.064311</article-id><article-categories><subj-group subj-group-type="heading"><subject>Commentary</subject></subj-group></article-categories><title-group><article-title>Criteria for Annotation of Plant MicroRNAs</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Meyers</surname><given-names>Blake C.</given-names></name><xref ref-type="aff" rid="aff1">a</xref><xref ref-type="corresp" rid="cor1">1</xref></contrib><contrib contrib-type="author"><name><surname>Axtell</surname><given-names>Michael J.</given-names></name><xref ref-type="aff" rid="aff2">b</xref><xref ref-type="corresp" rid="cor1">1</xref></contrib><contrib contrib-type="author"><name><surname>Bartel</surname><given-names>Bonnie</given-names></name><xref ref-type="aff" rid="aff3">c</xref></contrib><contrib contrib-type="author"><name><surname>Bartel</surname><given-names>David P.</given-names></name><xref ref-type="aff" rid="aff4">d</xref></contrib><contrib contrib-type="author"><name><surname>Baulcombe</surname><given-names>David</given-names></name><xref ref-type="aff" rid="aff5">e</xref></contrib><contrib contrib-type="author"><name><surname>Bowman</surname><given-names>John L.</given-names></name><xref ref-type="aff" rid="aff6">f</xref></contrib><contrib contrib-type="author"><name><surname>Cao</surname><given-names>Xiaofeng</given-names></name><xref ref-type="aff" rid="aff7">g</xref></contrib><contrib contrib-type="author"><name><surname>Carrington</surname><given-names>James C.</given-names></name><xref ref-type="aff" rid="aff8">h</xref></contrib><contrib contrib-type="author"><name><surname>Chen</surname><given-names>Xuemei</given-names></name><xref ref-type="aff" rid="aff9">i</xref></contrib><contrib contrib-type="author"><name><surname>Green</surname><given-names>Pamela J.</given-names></name><xref ref-type="aff" rid="aff1">a</xref></contrib><contrib contrib-type="author"><name><surname>Griffiths-Jones</surname><given-names>Sam</given-names></name><xref ref-type="aff" rid="aff10">j</xref></contrib><contrib contrib-type="author"><name><surname>Jacobsen</surname><given-names>Steven E.</given-names></name><xref ref-type="aff" rid="aff11">k</xref></contrib><contrib contrib-type="author"><name><surname>Mallory</surname><given-names>Allison C.</given-names></name><xref ref-type="aff" rid="aff12">l</xref></contrib><contrib contrib-type="author"><name><surname>Martienssen</surname><given-names>Robert A.</given-names></name><xref ref-type="aff" rid="aff13">m</xref></contrib><contrib contrib-type="author"><name><surname>Poethig</surname><given-names>R. Scott</given-names></name><xref ref-type="aff" rid="aff14">n</xref></contrib><contrib contrib-type="author"><name><surname>Qi</surname><given-names>Yijun</given-names></name><xref ref-type="aff" rid="aff15">o</xref></contrib><contrib contrib-type="author"><name><surname>Vaucheret</surname><given-names>Herve</given-names></name><xref ref-type="aff" rid="aff12">l</xref></contrib><contrib contrib-type="author"><name><surname>Voinnet</surname><given-names>Olivier</given-names></name><xref ref-type="aff" rid="aff16">p</xref></contrib><contrib contrib-type="author"><name><surname>Watanabe</surname><given-names>Yuichiro</given-names></name><xref ref-type="aff" rid="aff17">q</xref></contrib><contrib contrib-type="author"><name><surname>Weigel</surname><given-names>Detlef</given-names></name><xref ref-type="aff" rid="aff18">r</xref></contrib><contrib contrib-type="author"><name><surname>Zhu</surname><given-names>Jian-Kang</given-names></name><xref ref-type="aff" rid="aff9">i</xref></contrib></contrib-group><aff id="aff1"><label>a</label>Department of Plant and Soil Sciences, Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19711</aff><aff id="aff2"><label>b</label>Department of Biology and Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802</aff><aff id="aff3"><label>c</label>Department of Biochemistry and Cell Biology, Rice University, Houston, Texas 77005</aff><aff id="aff4"><label>d</label>Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Whitehead Institute, Cambridge, Massachusetts 02142</aff><aff id="aff5"><label>e</label>Plant Sciences Department, Cambridge University, Cambridge CB2 3EA, United Kingdom</aff><aff id="aff6"><label>f</label>School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia</aff><aff id="aff7"><label>g</label>Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China</aff><aff id="aff8"><label>h</label>Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331</aff><aff id="aff9"><label>i</label>Department of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, California 92521</aff><aff id="aff10"><label>j</label>Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom</aff><aff id="aff11"><label>k</label>Howard Hughes Medical Institute, Department of Molecular, Cell, and Developmental Biology, University of California, Los Angeles, California 90095</aff><aff id="aff12"><label>l</label>Laboratoire de Biologie Cellulaire, Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique, 78026 Versailles Cedex, France</aff><aff id="aff13"><label>m</label>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724</aff><aff id="aff14"><label>n</label>Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104</aff><aff id="aff15"><label>o</label>National Institute of Biological Sciences, Zhongguancun Life Science Park, Beijing 102206, China</aff><aff id="aff16"><label>p</label>Institut de Biologie Moleculaire des Plantes du Centre National de la Recherche Scientifique 12, 67084 Strasbourg Cedex, France</aff><aff id="aff17"><label>q</label>Department of Life Sciences, University of Tokyo, Meguro, Tokyo 153-8902, Japan</aff><aff id="aff18"><label>r</label>Department of Molecular Biology, Max Planck Institute for Developmental Biology, D-72076 Tübingen, Germany</aff><author-notes><fn id="cor1"><label>1</label><p>Address correspondence to <email>meyers@dbi.udel.edu</email> or <email>mja18@psu.edu</email>.</p></fn></author-notes><pub-date pub-type="ppub"><month>12</month><year>2008</year></pub-date><volume>20</volume><issue>12</issue><fpage>3186</fpage><lpage>3190</lpage><permissions><copyright-statement>Copyright © 2008, American Society of Plant Biologists</copyright-statement></permissions><abstract><p>MicroRNAs (miRNAs) are ∼21 nucleotide noncoding RNAs produced by Dicer-catalyzed excision from stem-loop precursors. Many plant miRNAs play critical roles in development, nutrient homeostasis, abiotic stress responses, and pathogen responses via interactions with specific target mRNAs. miRNAs are not the only Dicer-derived small RNAs produced by plants: A substantial amount of the total small RNA abundance and an overwhelming amount of small RNA sequence diversity is contributed by distinct classes of 21- to 24-nucleotide short interfering RNAs. This fact, coupled with the rapidly increasing rate of plant small RNA discovery, demands an increased rigor in miRNA annotations. Herein, we update the specific criteria required for the annotation of plant miRNAs, including experimental and computational data, as well as refinements to standard nomenclature.</p></abstract></article-meta><notes><fn-group><fn><p><ext-link ext-link-type="uri" xlink:href="www.plantcell.org/cgi/doi/10.1105/tpc.108.064311">www.plantcell.org/cgi/doi/10.1105/tpc.108.064311</ext-link></p></fn></fn-group></notes></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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