Novel genetic polymorphisms that further delineate the phylogeny of the Mycobacterium tuberculosis complex
Identifieur interne : 009D43 ( Main/Exploration ); précédent : 009D42; suivant : 009D44Novel genetic polymorphisms that further delineate the phylogeny of the Mycobacterium tuberculosis complex
Auteurs : Richard C. Huard [États-Unis] ; Michel Fabre [France] ; Petra De Haas [Pays-Bas] ; Luiz Claudio Oliveira Lazzarini [États-Unis] ; Dick Van Soolingen [Pays-Bas] ; Debby Cousins [Australie] ; John L. Ho [États-Unis]Source :
- Journal of bacteriology [ 0021-9193 ] ; 2006.
Descripteurs français
- Pascal (Inist)
- Wicri :
- topic : Génétique.
English descriptors
- KwdEn :
Abstract
In a previous report, we described a PCR protocol for the differentiation of the various species of the Mycobacterium tuberculosis complex (MTC) on the basis of genomic deletions (R. C. Huard, L. C. de Oliveira Lazzarini, W. R. Butler, D. van Soolingen, and J. L. Ho, J. Clin. Microbiol. 41:1637-1650, 2003). That report also provided a broad cross-comparison of several previously identified, phylogenetically relevant, long-sequence and single-nucleotide polymorphisms (LSPs and SNPs, respectively). In the present companion report, we expand upon the previous work (i) by continuing the evaluation of known MTC phylogenetic markers in a larger collection of tubercle bacilli (n = 125), (ii) by evaluating additional recently reported MTC species-specific and interspecific polymorphisms, and (iii) by describing the identification and distribution of a number of novel LSPs and SNPs. Notably, new genomic deletions were found in various Mycobacterium tuberculosis strains, new species-specific SNPs were identified for "Mycobacterium canettii," Mycobacterium microti, and Mycobacterium pinnipedii, and, for the first time, intraspecific single-nucleotide DNA differences were discovered for the dassie bacillus, the oryx bacillus, and the two Mycobacterium africanum subtype I variants. Surprisingly, coincident polymorphisms linked one M. africanum subtype I genotype with the dassie bacillus and M. microti with M. pinnipedii, thereby suggesting closer evolutionary ties within each pair of species than had been previously thought. Overall, the presented data add to the genetic definitions of several MTC organisms as well as fine-tune current models for the evolutionary history of the MTC.
Url:
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream PascalFrancis, to step Corpus: 004355
- to stream PascalFrancis, to step Curation: 001D40
- to stream PascalFrancis, to step Checkpoint: 003E20
- to stream Main, to step Merge: 00A842
- to stream Pmc, to step Corpus: 001005
- to stream Pmc, to step Curation: 000E66
- to stream Pmc, to step Checkpoint: 002B89
- to stream Ncbi, to step Merge: 000194
- to stream Ncbi, to step Curation: 000194
- to stream Ncbi, to step Checkpoint: 000194
- to stream Main, to step Merge: 00A275
- to stream Main, to step Curation: 009D43
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en" level="a">Novel genetic polymorphisms that further delineate the phylogeny of the Mycobacterium tuberculosis complex</title>
<author><name sortKey="Huard, Richard C" sort="Huard, Richard C" uniqKey="Huard R" first="Richard C." last="Huard">Richard C. Huard</name>
<affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Division of International Medicine and Infectious Diseases, Department of Medicine, Joan and Sanford I. Weill Medical College, Cornell University</s1>
<s2>New York, New York</s2>
<s3>USA</s3>
<sZ>1 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>7 aut.</sZ>
</inist:fA14>
<country>États-Unis</country>
<placeName><region type="state">État de New York</region>
<settlement type="city">Ithaca (New York)</settlement>
</placeName>
<orgName type="university">Université Cornell</orgName>
</affiliation>
</author>
<author><name sortKey="Fabre, Michel" sort="Fabre, Michel" uniqKey="Fabre M" first="Michel" last="Fabre">Michel Fabre</name>
<affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Laboratoire de Mycobactériologie, HIA Percy</s1>
<s2>92140 Clamart</s2>
<s3>FRA</s3>
<sZ>2 aut.</sZ>
</inist:fA14>
<country>France</country>
<wicri:noRegion>92140 Clamart</wicri:noRegion>
<wicri:noRegion>HIA Percy</wicri:noRegion>
<wicri:noRegion>92140 Clamart</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="De Haas, Petra" sort="De Haas, Petra" uniqKey="De Haas P" first="Petra" last="De Haas">Petra De Haas</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>National Institute of Public Health and the Environment</s1>
<s2>Bilthoven</s2>
<s3>NLD</s3>
<sZ>3 aut.</sZ>
<sZ>5 aut.</sZ>
</inist:fA14>
<country>Pays-Bas</country>
<wicri:noRegion>National Institute of Public Health and the Environment</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Lazzarini, Luiz Claudio Oliveira" sort="Lazzarini, Luiz Claudio Oliveira" uniqKey="Lazzarini L" first="Luiz Claudio Oliveira" last="Lazzarini">Luiz Claudio Oliveira Lazzarini</name>
<affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Division of International Medicine and Infectious Diseases, Department of Medicine, Joan and Sanford I. Weill Medical College, Cornell University</s1>
<s2>New York, New York</s2>
<s3>USA</s3>
<sZ>1 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>7 aut.</sZ>
</inist:fA14>
<country>États-Unis</country>
<placeName><region type="state">État de New York</region>
<settlement type="city">Ithaca (New York)</settlement>
</placeName>
<orgName type="university">Université Cornell</orgName>
</affiliation>
</author>
<author><name sortKey="Van Soolingen, Dick" sort="Van Soolingen, Dick" uniqKey="Van Soolingen D" first="Dick" last="Van Soolingen">Dick Van Soolingen</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>National Institute of Public Health and the Environment</s1>
<s2>Bilthoven</s2>
<s3>NLD</s3>
<sZ>3 aut.</sZ>
<sZ>5 aut.</sZ>
</inist:fA14>
<country>Pays-Bas</country>
<wicri:noRegion>National Institute of Public Health and the Environment</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Cousins, Debby" sort="Cousins, Debby" uniqKey="Cousins D" first="Debby" last="Cousins">Debby Cousins</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>Australian Reference Laboratory for Bovine Tuberculosis, Department of Agriculture</s1>
<s2>South Perth 6151</s2>
<s3>AUS</s3>
<sZ>6 aut.</sZ>
</inist:fA14>
<country>Australie</country>
<wicri:noRegion>South Perth 6151</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ho, John L" sort="Ho, John L" uniqKey="Ho J" first="John L." last="Ho">John L. Ho</name>
<affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Division of International Medicine and Infectious Diseases, Department of Medicine, Joan and Sanford I. Weill Medical College, Cornell University</s1>
<s2>New York, New York</s2>
<s3>USA</s3>
<sZ>1 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>7 aut.</sZ>
</inist:fA14>
<country>États-Unis</country>
<placeName><region type="state">État de New York</region>
<settlement type="city">Ithaca (New York)</settlement>
</placeName>
<orgName type="university">Université Cornell</orgName>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">INIST</idno>
<idno type="inist">06-0308450</idno>
<date when="2006">2006</date>
<idno type="stanalyst">PASCAL 06-0308450 INIST</idno>
<idno type="RBID">Pascal:06-0308450</idno>
<idno type="wicri:Area/PascalFrancis/Corpus">004355</idno>
<idno type="wicri:Area/PascalFrancis/Curation">001D40</idno>
<idno type="wicri:Area/PascalFrancis/Checkpoint">003E20</idno>
<idno type="wicri:explorRef" wicri:stream="PascalFrancis" wicri:step="Checkpoint">003E20</idno>
<idno type="wicri:doubleKey">0021-9193:2006:Huard R:novel:genetic:polymorphisms</idno>
<idno type="wicri:Area/Main/Merge">00A842</idno>
<idno type="wicri:source">PMC</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1482959</idno>
<idno type="RBID">PMC:1482959</idno>
<idno type="wicri:Area/Pmc/Corpus">001005</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001005</idno>
<idno type="wicri:Area/Pmc/Curation">000E66</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000E66</idno>
<idno type="wicri:Area/Pmc/Checkpoint">002B89</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">002B89</idno>
<idno type="wicri:Area/Ncbi/Merge">000194</idno>
<idno type="wicri:Area/Ncbi/Curation">000194</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000194</idno>
<idno type="wicri:doubleKey">0021-9193:2006:Huard R:novel:genetic:polymorphisms</idno>
<idno type="wicri:Area/Main/Merge">00A275</idno>
<idno type="wicri:Area/Main/Curation">009D43</idno>
<idno type="wicri:Area/Main/Exploration">009D43</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Novel genetic polymorphisms that further delineate the phylogeny of the Mycobacterium tuberculosis complex</title>
<author><name sortKey="Huard, Richard C" sort="Huard, Richard C" uniqKey="Huard R" first="Richard C." last="Huard">Richard C. Huard</name>
<affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Division of International Medicine and Infectious Diseases, Department of Medicine, Joan and Sanford I. Weill Medical College, Cornell University</s1>
<s2>New York, New York</s2>
<s3>USA</s3>
<sZ>1 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>7 aut.</sZ>
</inist:fA14>
<country>États-Unis</country>
<placeName><region type="state">État de New York</region>
<settlement type="city">Ithaca (New York)</settlement>
</placeName>
<orgName type="university">Université Cornell</orgName>
</affiliation>
</author>
<author><name sortKey="Fabre, Michel" sort="Fabre, Michel" uniqKey="Fabre M" first="Michel" last="Fabre">Michel Fabre</name>
<affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Laboratoire de Mycobactériologie, HIA Percy</s1>
<s2>92140 Clamart</s2>
<s3>FRA</s3>
<sZ>2 aut.</sZ>
</inist:fA14>
<country>France</country>
<wicri:noRegion>92140 Clamart</wicri:noRegion>
<wicri:noRegion>HIA Percy</wicri:noRegion>
<wicri:noRegion>92140 Clamart</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="De Haas, Petra" sort="De Haas, Petra" uniqKey="De Haas P" first="Petra" last="De Haas">Petra De Haas</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>National Institute of Public Health and the Environment</s1>
<s2>Bilthoven</s2>
<s3>NLD</s3>
<sZ>3 aut.</sZ>
<sZ>5 aut.</sZ>
</inist:fA14>
<country>Pays-Bas</country>
<wicri:noRegion>National Institute of Public Health and the Environment</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Lazzarini, Luiz Claudio Oliveira" sort="Lazzarini, Luiz Claudio Oliveira" uniqKey="Lazzarini L" first="Luiz Claudio Oliveira" last="Lazzarini">Luiz Claudio Oliveira Lazzarini</name>
<affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Division of International Medicine and Infectious Diseases, Department of Medicine, Joan and Sanford I. Weill Medical College, Cornell University</s1>
<s2>New York, New York</s2>
<s3>USA</s3>
<sZ>1 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>7 aut.</sZ>
</inist:fA14>
<country>États-Unis</country>
<placeName><region type="state">État de New York</region>
<settlement type="city">Ithaca (New York)</settlement>
</placeName>
<orgName type="university">Université Cornell</orgName>
</affiliation>
</author>
<author><name sortKey="Van Soolingen, Dick" sort="Van Soolingen, Dick" uniqKey="Van Soolingen D" first="Dick" last="Van Soolingen">Dick Van Soolingen</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>National Institute of Public Health and the Environment</s1>
<s2>Bilthoven</s2>
<s3>NLD</s3>
<sZ>3 aut.</sZ>
<sZ>5 aut.</sZ>
</inist:fA14>
<country>Pays-Bas</country>
<wicri:noRegion>National Institute of Public Health and the Environment</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Cousins, Debby" sort="Cousins, Debby" uniqKey="Cousins D" first="Debby" last="Cousins">Debby Cousins</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>Australian Reference Laboratory for Bovine Tuberculosis, Department of Agriculture</s1>
<s2>South Perth 6151</s2>
<s3>AUS</s3>
<sZ>6 aut.</sZ>
</inist:fA14>
<country>Australie</country>
<wicri:noRegion>South Perth 6151</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ho, John L" sort="Ho, John L" uniqKey="Ho J" first="John L." last="Ho">John L. Ho</name>
<affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Division of International Medicine and Infectious Diseases, Department of Medicine, Joan and Sanford I. Weill Medical College, Cornell University</s1>
<s2>New York, New York</s2>
<s3>USA</s3>
<sZ>1 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>7 aut.</sZ>
</inist:fA14>
<country>États-Unis</country>
<placeName><region type="state">État de New York</region>
<settlement type="city">Ithaca (New York)</settlement>
</placeName>
<orgName type="university">Université Cornell</orgName>
</affiliation>
</author>
</analytic>
<series><title level="j" type="main">Journal of bacteriology</title>
<title level="j" type="abbreviated">J. bacteriol.</title>
<idno type="ISSN">0021-9193</idno>
<imprint><date when="2006">2006</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt><title level="j" type="main">Journal of bacteriology</title>
<title level="j" type="abbreviated">J. bacteriol.</title>
<idno type="ISSN">0021-9193</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacteriology</term>
<term>Genetics</term>
<term>Microbiology</term>
<term>Mycobacterium tuberculosis</term>
<term>Phylogeny</term>
<term>Polymorphism</term>
<term>Species complex</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr"><term>Mycobacterium tuberculosis</term>
<term>Génétique</term>
<term>Polymorphisme</term>
<term>Phylogenèse</term>
<term>Complexe espèces</term>
<term>Microbiologie</term>
<term>Bactériologie</term>
</keywords>
<keywords scheme="Wicri" type="topic" xml:lang="fr"><term>Génétique</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">In a previous report, we described a PCR protocol for the differentiation of the various species of the Mycobacterium tuberculosis complex (MTC) on the basis of genomic deletions (R. C. Huard, L. C. de Oliveira Lazzarini, W. R. Butler, D. van Soolingen, and J. L. Ho, J. Clin. Microbiol. 41:1637-1650, 2003). That report also provided a broad cross-comparison of several previously identified, phylogenetically relevant, long-sequence and single-nucleotide polymorphisms (LSPs and SNPs, respectively). In the present companion report, we expand upon the previous work (i) by continuing the evaluation of known MTC phylogenetic markers in a larger collection of tubercle bacilli (n = 125), (ii) by evaluating additional recently reported MTC species-specific and interspecific polymorphisms, and (iii) by describing the identification and distribution of a number of novel LSPs and SNPs. Notably, new genomic deletions were found in various Mycobacterium tuberculosis strains, new species-specific SNPs were identified for "Mycobacterium canettii," Mycobacterium microti, and Mycobacterium pinnipedii, and, for the first time, intraspecific single-nucleotide DNA differences were discovered for the dassie bacillus, the oryx bacillus, and the two Mycobacterium africanum subtype I variants. Surprisingly, coincident polymorphisms linked one M. africanum subtype I genotype with the dassie bacillus and M. microti with M. pinnipedii, thereby suggesting closer evolutionary ties within each pair of species than had been previously thought. Overall, the presented data add to the genetic definitions of several MTC organisms as well as fine-tune current models for the evolutionary history of the MTC.</div>
</front>
</TEI>
<affiliations><list><country><li>Australie</li>
<li>France</li>
<li>Pays-Bas</li>
<li>États-Unis</li>
</country>
<region><li>État de New York</li>
</region>
<settlement><li>Ithaca (New York)</li>
</settlement>
<orgName><li>Université Cornell</li>
</orgName>
</list>
<tree><country name="États-Unis"><region name="État de New York"><name sortKey="Huard, Richard C" sort="Huard, Richard C" uniqKey="Huard R" first="Richard C." last="Huard">Richard C. Huard</name>
</region>
<name sortKey="Ho, John L" sort="Ho, John L" uniqKey="Ho J" first="John L." last="Ho">John L. Ho</name>
<name sortKey="Lazzarini, Luiz Claudio Oliveira" sort="Lazzarini, Luiz Claudio Oliveira" uniqKey="Lazzarini L" first="Luiz Claudio Oliveira" last="Lazzarini">Luiz Claudio Oliveira Lazzarini</name>
</country>
<country name="France"><noRegion><name sortKey="Fabre, Michel" sort="Fabre, Michel" uniqKey="Fabre M" first="Michel" last="Fabre">Michel Fabre</name>
</noRegion>
</country>
<country name="Pays-Bas"><noRegion><name sortKey="De Haas, Petra" sort="De Haas, Petra" uniqKey="De Haas P" first="Petra" last="De Haas">Petra De Haas</name>
</noRegion>
<name sortKey="Van Soolingen, Dick" sort="Van Soolingen, Dick" uniqKey="Van Soolingen D" first="Dick" last="Van Soolingen">Dick Van Soolingen</name>
</country>
<country name="Australie"><noRegion><name sortKey="Cousins, Debby" sort="Cousins, Debby" uniqKey="Cousins D" first="Debby" last="Cousins">Debby Cousins</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Asie/explor/AustralieFrV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 009D43 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 009D43 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Asie |area= AustralieFrV1 |flux= Main |étape= Exploration |type= RBID |clé= Pascal:06-0308450 |texte= Novel genetic polymorphisms that further delineate the phylogeny of the Mycobacterium tuberculosis complex }}
![]() | This area was generated with Dilib version V0.6.33. | ![]() |