Novel Genetic Polymorphisms That Further Delineate the Phylogeny of the Mycobacterium tuberculosis Complex†
Identifieur interne : 000E66 ( Pmc/Curation ); précédent : 000E65; suivant : 000E67Novel Genetic Polymorphisms That Further Delineate the Phylogeny of the Mycobacterium tuberculosis Complex†
Auteurs : Richard C. Huard ; Michel Fabre ; Petra De Haas ; Luiz Claudio Oliveira Lazzarini ; Dick Van Soolingen ; Debby Cousins ; John L. HoSource :
- Journal of Bacteriology [ 0021-9193 ] ; 2006.
Abstract
In a previous report, we described a PCR protocol for the differentiation of the various species of the
Url:
DOI: 10.1128/JB.01783-05
PubMed: 16740934
PubMed Central: 1482959
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Novel Genetic Polymorphisms That Further Delineate the Phylogeny of the <italic>Mycobacterium tuberculosis</italic>
Complex<xref ref-type="fn" rid="fn1">†</xref>
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<author><name sortKey="Claudio Oliveira Lazzarini, Luiz" sort="Claudio Oliveira Lazzarini, Luiz" uniqKey="Claudio Oliveira Lazzarini L" first="Luiz" last="Claudio Oliveira Lazzarini">Luiz Claudio Oliveira Lazzarini</name>
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<series><title level="j">Journal of Bacteriology</title>
<idno type="ISSN">0021-9193</idno>
<idno type="eISSN">1098-5530</idno>
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<front><div type="abstract" xml:lang="en"><p>In a previous report, we described a PCR protocol for the differentiation of the various species of the <italic>Mycobacterium tuberculosis</italic>
complex (MTC) on the basis of genomic deletions (R. C. Huard, L. C. de Oliveira Lazzarini, W. R. Butler, D. van Soolingen, and J. L. Ho, J. Clin. Microbiol. <bold>41:</bold>
1637-1650, 2003). That report also provided a broad cross-comparison of several previously identified, phylogenetically relevant, long-sequence and single-nucleotide polymorphisms (LSPs and SNPs, respectively). In the present companion report, we expand upon the previous work (i) by continuing the evaluation of known MTC phylogenetic markers in a larger collection of tubercle bacilli (<italic>n</italic>
= 125), (ii) by evaluating additional recently reported MTC species-specific and interspecific polymorphisms, and (iii) by describing the identification and distribution of a number of novel LSPs and SNPs. Notably, new genomic deletions were found in various <italic>Mycobacterium tuberculosis</italic>
strains, new species-specific SNPs were identified for “<italic>Mycobacterium canettii</italic>
,” <italic>Mycobacterium microti</italic>
, and <italic>Mycobacterium pinnipedii</italic>
, and, for the first time, intraspecific single-nucleotide DNA differences were discovered for the dassie bacillus, the oryx bacillus, and the two <italic>Mycobacterium africanum</italic>
subtype I variants. Surprisingly, coincident polymorphisms linked one <italic>M. africanum</italic>
subtype I genotype with the dassie bacillus and <italic>M. microti</italic>
with <italic>M. pinnipedii</italic>
, thereby suggesting closer evolutionary ties within each pair of species than had been previously thought. Overall, the presented data add to the genetic definitions of several MTC organisms as well as fine-tune current models for the evolutionary history of the MTC.</p>
</div>
</front>
</TEI>
<pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">J Bacteriol</journal-id>
<journal-id journal-id-type="publisher-id">jb</journal-id>
<journal-title>Journal of Bacteriology</journal-title>
<issn pub-type="ppub">0021-9193</issn>
<issn pub-type="epub">1098-5530</issn>
<publisher><publisher-name>American Society for Microbiology</publisher-name>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">16740934</article-id>
<article-id pub-id-type="pmc">1482959</article-id>
<article-id pub-id-type="publisher-id">1783-05</article-id>
<article-id pub-id-type="doi">10.1128/JB.01783-05</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Population Genetics and Evolution</subject>
</subj-group>
</article-categories>
<title-group><article-title>Novel Genetic Polymorphisms That Further Delineate the Phylogeny of the <italic>Mycobacterium tuberculosis</italic>
Complex<xref ref-type="fn" rid="fn1">†</xref>
</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Huard</surname>
<given-names>Richard C.</given-names>
</name>
<xref ref-type="aff" rid="aff1">1</xref>
<xref ref-type="fn" rid="fn2">‡</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Fabre</surname>
<given-names>Michel</given-names>
</name>
<xref ref-type="aff" rid="aff1">2</xref>
</contrib>
<contrib contrib-type="author"><name><surname>de Haas</surname>
<given-names>Petra</given-names>
</name>
<xref ref-type="aff" rid="aff1">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Claudio Oliveira Lazzarini</surname>
<given-names>Luiz</given-names>
</name>
<xref ref-type="aff" rid="aff1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>van Soolingen</surname>
<given-names>Dick</given-names>
</name>
<xref ref-type="aff" rid="aff1">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Cousins</surname>
<given-names>Debby</given-names>
</name>
<xref ref-type="aff" rid="aff1">4</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Ho</surname>
<given-names>John L.</given-names>
</name>
<xref ref-type="aff" rid="aff1">1</xref>
<xref ref-type="corresp" rid="cor1">*</xref>
</contrib>
</contrib-group>
<aff id="aff1">Division of International Medicine and Infectious Diseases, Department of Medicine, Joan and Sanford I. Weill Medical College, Cornell University, New York, New York,<label>1</label>
Laboratoire de Mycobactériologie, HIA Percy, 92140 Clamart, France,<label>2</label>
National Institute of Public Health and the Environment, Bilthoven, The Netherlands,<label>3</label>
Australian Reference Laboratory for Bovine Tuberculosis, Department of Agriculture, South Perth 6151, Australia<label>4</label>
</aff>
<author-notes><fn id="cor1"><label>*</label>
<p>Corresponding author. Mailing address: Division of International Medicine and Infectious Diseases, Department of Medicine, Joan and Sanford I. Weill Medical College, Cornell University, Room A-421, 525 East 68th St., New York, NY 10021. Phone: (212) 746-6316. Fax: (212) 746-8975. E-mail: <email>jlho@med.cornell.edu</email>
.</p>
</fn>
<fn id="fn2"><label>‡</label>
<p>Present address: Clinical Microbiology Service and the Department of Pathology, Columbia University Medical Center, New York-Presbyterian Hospital, New York, NY 10032.</p>
</fn>
</author-notes>
<pub-date pub-type="ppub"><month>6</month>
<year>2006</year>
</pub-date>
<volume>188</volume>
<issue>12</issue>
<fpage>4271</fpage>
<lpage>4287</lpage>
<history><date date-type="received"><day>22</day>
<month>11</month>
<year>2005</year>
</date>
<date date-type="accepted"><day>3</day>
<month>4</month>
<year>2006</year>
</date>
</history>
<copyright-statement>Copyright © 2006, American Society for Microbiology</copyright-statement>
<copyright-year>2006</copyright-year>
<self-uri xlink:title="pdf" xlink:href="zjb01206004271.pdf"></self-uri>
<abstract><p>In a previous report, we described a PCR protocol for the differentiation of the various species of the <italic>Mycobacterium tuberculosis</italic>
complex (MTC) on the basis of genomic deletions (R. C. Huard, L. C. de Oliveira Lazzarini, W. R. Butler, D. van Soolingen, and J. L. Ho, J. Clin. Microbiol. <bold>41:</bold>
1637-1650, 2003). That report also provided a broad cross-comparison of several previously identified, phylogenetically relevant, long-sequence and single-nucleotide polymorphisms (LSPs and SNPs, respectively). In the present companion report, we expand upon the previous work (i) by continuing the evaluation of known MTC phylogenetic markers in a larger collection of tubercle bacilli (<italic>n</italic>
= 125), (ii) by evaluating additional recently reported MTC species-specific and interspecific polymorphisms, and (iii) by describing the identification and distribution of a number of novel LSPs and SNPs. Notably, new genomic deletions were found in various <italic>Mycobacterium tuberculosis</italic>
strains, new species-specific SNPs were identified for “<italic>Mycobacterium canettii</italic>
,” <italic>Mycobacterium microti</italic>
, and <italic>Mycobacterium pinnipedii</italic>
, and, for the first time, intraspecific single-nucleotide DNA differences were discovered for the dassie bacillus, the oryx bacillus, and the two <italic>Mycobacterium africanum</italic>
subtype I variants. Surprisingly, coincident polymorphisms linked one <italic>M. africanum</italic>
subtype I genotype with the dassie bacillus and <italic>M. microti</italic>
with <italic>M. pinnipedii</italic>
, thereby suggesting closer evolutionary ties within each pair of species than had been previously thought. Overall, the presented data add to the genetic definitions of several MTC organisms as well as fine-tune current models for the evolutionary history of the MTC.</p>
</abstract>
</article-meta>
</front>
</pmc>
</record>
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