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Mycobacterium tuberculosis lineages and anti-tuberculosis drug resistance in reference hospitals across Viet Nam

Identifieur interne : 002510 ( Main/Exploration ); précédent : 002509; suivant : 002511

Mycobacterium tuberculosis lineages and anti-tuberculosis drug resistance in reference hospitals across Viet Nam

Auteurs : Van Anh Thi Nguyen [Viêt Nam] ; Anne-Laure Ba Uls [Viêt Nam, France] ; Thanh Hoa Thi Tran [Viêt Nam] ; Kim Lien Thi Pham [Viêt Nam] ; Thai Son Nguyen [Viêt Nam] ; Hung Van Nguyen [Viêt Nam] ; Ngoc Lan Thi Nguyen [Viêt Nam] ; Nam Lien Thi Nguyen [Viêt Nam] ; Duc Anh Dang [Viêt Nam] ; Guy B. Marks [Australie] ; Marc Choisy [France, Viêt Nam]

Source :

RBID : PMC:4964266

Descripteurs français

English descriptors

Abstract

Background

Mycobacterium tuberculosis, the tuberculosis (TB) pathogen, despite a low level of genetic diversity, has revealed a high variety of biological and epidemiological characteristics linked to their lineages, such as transmissibility, fitness and propensity to acquire drug resistance. This has important implications for the epidemiology of TB. We conducted this first countrywide cross-sectional study to identify the prevalent M. tuberculosis lineages and to assess their epidemiological associations and their relation to drug resistance. The study was conducted among isolates acquired in reference hospitals across Vietnam. Isolates with drug susceptibility testing profiles were identified for their lineages by spoligotyping. Logistic regression was used to investigate the association of M. tuberculosis lineages with location, age and sex of the patients and drug resistance levels.

Results

Results showed that the most prevalent lineage was Beijing (55.4 %), followed by EAI (27.5 %), T (6.4 %), LAM (1.3 %), Haarlem (1 %) and Zero type (0.3 %). The proportion of Beijing isolates in the North (70.4 %) and the South (68 %) was higher than in the Centre (28 %) (OR = 1.7 [95 % CI: 1.4–2.0], p < 0.0001), whereas the proportion of EAI isolates in the North (7.1 %) and the South (17 %) was much lower compared with the Centre (59 %) (OR = 0.5 [95 % CI: 0.4–0.6], p < 0.0001). Overall, Beijing isolates were the most likely to be drug-resistant and EAI isolates were the least likely to be drug-resistant, except in the South of Vietnam where EAI is also highly drug-resistant. The proportion of Beijing isolates was significantly higher (p < 0.01), and the proportion of EAI isolates was significantly lower (p < 0.05) in younger patients. The proportion of drug-resistance was higher in isolates collected from male patients and from patients in the middle age groups.

Conclusions

The findings suggest ongoing replacement of EAI lineage, which is mainly more drug-susceptible with highly drug-resistant Beijing lineage in all studied regions of Vietnam. Male patients of working ages should be the focus for better control to prevent the emergence of drug-resistant TB.

Electronic supplementary material

The online version of this article (doi:10.1186/s12866-016-0784-6) contains supplementary material, which is available to authorized users.


Url:
DOI: 10.1186/s12866-016-0784-6
PubMed: 27464737
PubMed Central: 4964266


Affiliations:


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Le document en format XML

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lineages and anti-tuberculosis drug resistance in reference hospitals across Viet Nam</title>
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<keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en">
<term>Antitubercular Agents</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en">
<term>Mycobacterium tuberculosis</term>
</keywords>
<keywords scheme="MESH" qualifier="drug effects" xml:lang="en">
<term>Mycobacterium tuberculosis</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en">
<term>Tuberculosis, Multidrug-Resistant</term>
<term>Vietnam</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Mycobacterium tuberculosis</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>ADN bactérien</term>
<term>Mycobacterium tuberculosis</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en">
<term>Mycobacterium tuberculosis</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr">
<term>Mycobacterium tuberculosis</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr">
<term>Tuberculose multirésistante</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en">
<term>Tuberculosis, Multidrug-Resistant</term>
</keywords>
<keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr">
<term>Antituberculeux</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr">
<term>Tuberculose multirésistante</term>
<term>Vietnam</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Adolescent</term>
<term>Adult</term>
<term>Age Factors</term>
<term>Aged</term>
<term>Aged, 80 and over</term>
<term>Child</term>
<term>Child, Preschool</term>
<term>Cross-Sectional Studies</term>
<term>Female</term>
<term>Genetic Variation</term>
<term>Genotype</term>
<term>Hospitals</term>
<term>Humans</term>
<term>Infant</term>
<term>Infant, Newborn</term>
<term>Male</term>
<term>Microbial Sensitivity Tests</term>
<term>Middle Aged</term>
<term>Molecular Epidemiology</term>
<term>Phylogeny</term>
<term>Sex Factors</term>
<term>Young Adult</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Adolescent</term>
<term>Adulte</term>
<term>Adulte d'âge moyen</term>
<term>Enfant</term>
<term>Enfant d'âge préscolaire</term>
<term>Facteurs de l'âge</term>
<term>Facteurs sexuels</term>
<term>Femelle</term>
<term>Génotype</term>
<term>Humains</term>
<term>Hôpitaux</term>
<term>Jeune adulte</term>
<term>Mycobacterium tuberculosis</term>
<term>Mâle</term>
<term>Nourrisson</term>
<term>Nouveau-né</term>
<term>Phylogénie</term>
<term>Sujet âgé</term>
<term>Sujet âgé de 80 ans ou plus</term>
<term>Tests de sensibilité microbienne</term>
<term>Variation génétique</term>
<term>Épidémiologie moléculaire</term>
<term>Études transversales</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<sec>
<title>Background</title>
<p>
<italic>Mycobacterium tuberculosis</italic>
, the tuberculosis (TB) pathogen, despite a low level of genetic diversity, has revealed a high variety of biological and epidemiological characteristics linked to their lineages, such as transmissibility, fitness and propensity to acquire drug resistance. This has important implications for the epidemiology of TB. We conducted this first countrywide cross-sectional study to identify the prevalent
<italic>M. tuberculosis</italic>
lineages and to assess their epidemiological associations and their relation to drug resistance. The study was conducted among isolates acquired in reference hospitals across Vietnam. Isolates with drug susceptibility testing profiles were identified for their lineages by spoligotyping. Logistic regression was used to investigate the association of
<italic>M. tuberculosis</italic>
lineages with location, age and sex of the patients and drug resistance levels.</p>
</sec>
<sec>
<title>Results</title>
<p>Results showed that the most prevalent lineage was Beijing (55.4 %), followed by EAI (27.5 %), T (6.4 %), LAM (1.3 %), Haarlem (1 %) and Zero type (0.3 %). The proportion of Beijing isolates in the North (70.4 %) and the South (68 %) was higher than in the Centre (28 %) (OR = 1.7 [95 % CI: 1.4–2.0],
<italic>p</italic>
 < 0.0001), whereas the proportion of EAI isolates in the North (7.1 %) and the South (17 %) was much lower compared with the Centre (59 %) (OR = 0.5 [95 % CI: 0.4–0.6],
<italic>p</italic>
 < 0.0001). Overall, Beijing isolates were the most likely to be drug-resistant and EAI isolates were the least likely to be drug-resistant, except in the South of Vietnam where EAI is also highly drug-resistant. The proportion of Beijing isolates was significantly higher (
<italic>p</italic>
 < 0.01), and the proportion of EAI isolates was significantly lower (
<italic>p</italic>
 < 0.05) in younger patients. The proportion of drug-resistance was higher in isolates collected from male patients and from patients in the middle age groups.</p>
</sec>
<sec>
<title>Conclusions</title>
<p>The findings suggest ongoing replacement of EAI lineage, which is mainly more drug-susceptible with highly drug-resistant Beijing lineage in all studied regions of Vietnam. Male patients of working ages should be the focus for better control to prevent the emergence of drug-resistant TB.</p>
</sec>
<sec>
<title>Electronic supplementary material</title>
<p>The online version of this article (doi:10.1186/s12866-016-0784-6) contains supplementary material, which is available to authorized users.</p>
</sec>
</div>
</front>
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<analytic>
<author>
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<name sortKey="Borgdorff, Mw" uniqKey="Borgdorff M">MW Borgdorff</name>
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</TEI>
<affiliations>
<list>
<country>
<li>Australie</li>
<li>France</li>
<li>Viêt Nam</li>
</country>
<region>
<li>Languedoc-Roussillon</li>
<li>Nouvelle-Galles du Sud</li>
<li>Occitanie (région administrative)</li>
</region>
<settlement>
<li>Montpellier</li>
<li>Sydney</li>
</settlement>
<orgName>
<li>Université de Sydney</li>
</orgName>
</list>
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<country name="Viêt Nam">
<noRegion>
<name sortKey="Nguyen, Van Anh Thi" sort="Nguyen, Van Anh Thi" uniqKey="Nguyen V" first="Van Anh Thi" last="Nguyen">Van Anh Thi Nguyen</name>
</noRegion>
<name sortKey="Ba Uls, Anne Laure" sort="Ba Uls, Anne Laure" uniqKey="Ba Uls A" first="Anne-Laure" last="Ba Uls">Anne-Laure Ba Uls</name>
<name sortKey="Choisy, Marc" sort="Choisy, Marc" uniqKey="Choisy M" first="Marc" last="Choisy">Marc Choisy</name>
<name sortKey="Dang, Duc Anh" sort="Dang, Duc Anh" uniqKey="Dang D" first="Duc Anh" last="Dang">Duc Anh Dang</name>
<name sortKey="Nguyen, Hung Van" sort="Nguyen, Hung Van" uniqKey="Nguyen H" first="Hung Van" last="Nguyen">Hung Van Nguyen</name>
<name sortKey="Nguyen, Nam Lien Thi" sort="Nguyen, Nam Lien Thi" uniqKey="Nguyen N" first="Nam Lien Thi" last="Nguyen">Nam Lien Thi Nguyen</name>
<name sortKey="Nguyen, Ngoc Lan Thi" sort="Nguyen, Ngoc Lan Thi" uniqKey="Nguyen N" first="Ngoc Lan Thi" last="Nguyen">Ngoc Lan Thi Nguyen</name>
<name sortKey="Nguyen, Thai Son" sort="Nguyen, Thai Son" uniqKey="Nguyen T" first="Thai Son" last="Nguyen">Thai Son Nguyen</name>
<name sortKey="Nguyen, Van Anh Thi" sort="Nguyen, Van Anh Thi" uniqKey="Nguyen V" first="Van Anh Thi" last="Nguyen">Van Anh Thi Nguyen</name>
<name sortKey="Pham, Kim Lien Thi" sort="Pham, Kim Lien Thi" uniqKey="Pham K" first="Kim Lien Thi" last="Pham">Kim Lien Thi Pham</name>
<name sortKey="Tran, Thanh Hoa Thi" sort="Tran, Thanh Hoa Thi" uniqKey="Tran T" first="Thanh Hoa Thi" last="Tran">Thanh Hoa Thi Tran</name>
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<country name="France">
<region name="Occitanie (région administrative)">
<name sortKey="Ba Uls, Anne Laure" sort="Ba Uls, Anne Laure" uniqKey="Ba Uls A" first="Anne-Laure" last="Ba Uls">Anne-Laure Ba Uls</name>
</region>
<name sortKey="Choisy, Marc" sort="Choisy, Marc" uniqKey="Choisy M" first="Marc" last="Choisy">Marc Choisy</name>
</country>
<country name="Australie">
<region name="Nouvelle-Galles du Sud">
<name sortKey="Marks, Guy B" sort="Marks, Guy B" uniqKey="Marks G" first="Guy B." last="Marks">Guy B. Marks</name>
</region>
<name sortKey="Marks, Guy B" sort="Marks, Guy B" uniqKey="Marks G" first="Guy B." last="Marks">Guy B. Marks</name>
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</tree>
</affiliations>
</record>

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