Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework
Identifieur interne : 004549 ( Main/Curation ); précédent : 004548; suivant : 004550Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework
Auteurs : B. Slippers [Afrique du Sud] ; E. Boissin [Afrique du Sud, France] ; A. J. L. Phillips [Portugal] ; J. Z. Groenewald [Pays-Bas] ; L. Lombard [Pays-Bas] ; M. J. Wingfield [Afrique du Sud] ; A. Postma [Afrique du Sud] ; T. Burgess [Australie] ; P. W. Crous [Afrique du Sud, Pays-Bas]Source :
- Studies in Mycology [ 0166-0616 ] ; 2013.
Abstract
The order
Url:
DOI: 10.3114/sim0020
PubMed: 24302789
PubMed Central: 3825231
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Slippers</name><affiliation wicri:level="1"><nlm:aff id="A1"> Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002, South Africa</nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea> Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002</wicri:regionArea><wicri:noRegion>Pretoria 0002</wicri:noRegion></affiliation></author><author><name sortKey="Boissin, E" sort="Boissin, E" uniqKey="Boissin E" first="E." last="Boissin">E. Boissin</name><affiliation wicri:level="1"><nlm:aff id="A1"> Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002, South Africa</nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea> Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002</wicri:regionArea><wicri:noRegion>Pretoria 0002</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A2"> USR3278-Criobe-CNRS-EPHE, Laboratoire d’Excellence “CORAIL”, Université de Perpignan-CBETM, 58 rue Paul Alduy, 66860 Perpignan Cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea> USR3278-Criobe-CNRS-EPHE, Laboratoire d’Excellence “CORAIL”, Université de Perpignan-CBETM, 58 rue Paul Alduy, 66860 Perpignan Cedex</wicri:regionArea><wicri:noRegion>66860 Perpignan Cedex</wicri:noRegion><wicri:noRegion>66860 Perpignan Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Phillips, A J L" sort="Phillips, A J L" uniqKey="Phillips A" first="A. J. L." last="Phillips">A. J. L. Phillips</name><affiliation wicri:level="1"><nlm:aff id="A3"> Centro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Portugal</nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea> Centro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica</wicri:regionArea><wicri:noRegion>Caparica</wicri:noRegion></affiliation></author><author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name><affiliation wicri:level="1"><nlm:aff id="A4"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation></author><author><name sortKey="Lombard, L" sort="Lombard, L" uniqKey="Lombard L" first="L." last="Lombard">L. Lombard</name><affiliation wicri:level="1"><nlm:aff id="A4"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation></author><author><name sortKey="Wingfield, M J" sort="Wingfield, M J" uniqKey="Wingfield M" first="M. J." last="Wingfield">M. J. Wingfield</name><affiliation wicri:level="1"><nlm:aff id="A1"> Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002, South Africa</nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea> Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002</wicri:regionArea><wicri:noRegion>Pretoria 0002</wicri:noRegion></affiliation></author><author><name sortKey="Postma, A" sort="Postma, A" uniqKey="Postma A" first="A." last="Postma">A. Postma</name><affiliation wicri:level="1"><nlm:aff id="A1"> Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002, South Africa</nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea> Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002</wicri:regionArea><wicri:noRegion>Pretoria 0002</wicri:noRegion></affiliation></author><author><name sortKey="Burgess, T" sort="Burgess, T" uniqKey="Burgess T" first="T." last="Burgess">T. Burgess</name><affiliation wicri:level="1"><nlm:aff id="A5"> School of Biological Sciences and Biotechnology, Murdoch University, Perth, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea> School of Biological Sciences and Biotechnology, Murdoch University, Perth</wicri:regionArea><wicri:noRegion>Perth</wicri:noRegion></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation wicri:level="1"><nlm:aff id="A1"> Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002, South Africa</nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea> Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002</wicri:regionArea><wicri:noRegion>Pretoria 0002</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A4"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation></author></analytic><series><title level="j">Studies in Mycology</title><idno type="ISSN">0166-0616</idno><idno type="eISSN">1872-9797</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="P6">The order <italic>Botryosphaeriales</italic> represents several ecologically diverse fungal families that are commonly isolated as endophytes or pathogens from various woody hosts. The taxonomy of members of this order has been strongly influenced by sequence-based phylogenetics, and the abandonment of dual nomenclature. In this study, the phylogenetic relationships of the genera known from culture are evaluated based on DNA sequence data for six loci (SSU, LSU, ITS, EF1, BT, mtSSU). The results make it possible to recognise a total of six families. Other than the <italic>Botryosphaeriaceae</italic> (17 genera), <italic>Phyllostictaceae</italic> (<italic>Phyllosticta</italic>) and <italic>Planistromellaceae</italic> (<italic>Kellermania</italic>), newly introduced families include <italic>Aplosporellaceae</italic> (<italic>Aplosporella</italic> and <italic>Bagnisiella</italic>), <italic>Melanopsaceae</italic> (<italic>Melanops</italic>), and <italic>Saccharataceae</italic> (<italic>Saccharata</italic>). Furthermore, the evolution of morphological characters in the <italic>Botryosphaeriaceae</italic> were investigated via analysis of phylogeny-trait association. None of the traits presented a significant phylogenetic signal, suggesting that conidial and ascospore pigmentation, septation and appendages evolved more than once in the family. Molecular clock dating on radiations within the <italic>Botryosphaeriales</italic> based on estimated mutation rates of the rDNA SSU locus, suggests that the order originated in the Cretaceous period around 103 (45-188) mya, with most of the diversification in the Tertiary period. This coincides with important periods of radiation and spread of the main group of plants that these fungi infect, namely woody Angiosperms. The resulting host-associations and distribution could have influenced the diversification of these fungi.</p><sec id="S1"><title>Taxonomic novelties:</title><p id="P7"><bold>New families</bold> - <italic>Aplosporellaceae</italic> Slippers, Boissin & Crous, <italic>Melanopsaceae</italic> Phillips, Slippers, Boissin & Crous, <italic>Saccharataceae</italic> Slippers, Boissin & Crous.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Aa, Ha Van Der" uniqKey="Aa H">HA van der Aa</name></author><author><name sortKey="Vanev, S" uniqKey="Vanev S">S Vanev</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Abdollahzadeh, J" uniqKey="Abdollahzadeh J">J Abdollahzadeh</name></author><author><name sortKey="Mohammadi Goltapeh, E" uniqKey="Mohammadi Goltapeh E">E Mohammadi Goltapeh</name></author><author><name sortKey="Javadi, A" uniqKey="Javadi A">A Javadi</name></author><author><name sortKey="Shams Bakhsh, M" uniqKey="Shams Bakhsh M">M Shams-bakhsh</name></author><author><name sortKey="Zare, R" uniqKey="Zare R">R Zare</name></author><author><name sortKey="Phillips, Ajl" uniqKey="Phillips A">AJL Phillips</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Alves, A" uniqKey="Alves A">A Alves</name></author><author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name></author><author><name sortKey="Correia, A" uniqKey="Correia A">A Correia</name></author><author><name sortKey="Phillips, Ajl" uniqKey="Phillips A">AJL Phillips</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Barber, P" uniqKey="Barber P">P Barber</name></author><author><name sortKey="Burgess, T" uniqKey="Burgess T">T Burgess</name></author><author><name sortKey="Hardy, G" uniqKey="Hardy G">G Hardy</name></author><author><name sortKey="Slippers, B" uniqKey="Slippers B">B Slippers</name></author><author><name sortKey="Keane, P" uniqKey="Keane P">P Keane</name></author><author><name sortKey="Wingfield, Mj" uniqKey="Wingfield M">MJ Wingfield</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Barker, Np" uniqKey="Barker N">NP Barker</name></author><author><name sortKey="Weston, Ph" uniqKey="Weston P">PH Weston</name></author><author><name sortKey="Rutschmann, F" uniqKey="Rutschmann F">F Rutschmann</name></author><author><name sortKey="Sauquet, H" uniqKey="Sauquet H">H Sauquet</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bell, Cd" uniqKey="Bell C">CD Bell</name></author><author><name sortKey="Soltis, De" uniqKey="Soltis D">DE Soltis</name></author><author><name sortKey="Soltis, Ps" uniqKey="Soltis P">PS Soltis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Berbee, Ml" uniqKey="Berbee M">ML Berbee</name></author><author><name sortKey="Taylor, Jw" uniqKey="Taylor J">JW Taylor</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bihon, W" uniqKey="Bihon W">W Bihon</name></author><author><name sortKey="Burgess, T" uniqKey="Burgess T">T Burgess</name></author><author><name sortKey="Slippers, B" uniqKey="Slippers B">B Slippers</name></author><author><name sortKey="Wingfield, Mj" uniqKey="Wingfield M">MJ Wingfield</name></author><author><name sortKey="Wingfield, Bd" uniqKey="Wingfield B">BD Wingfield</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bull, Jj" uniqKey="Bull J">JJ Bull</name></author><author><name sortKey="Huelsenbeck, Jp" uniqKey="Huelsenbeck J">JP Huelsenbeck</name></author><author><name sortKey="Cunningham, Cw" uniqKey="Cunningham C">CW Cunningham</name></author><author><name sortKey="Swofford, Dl" uniqKey="Swofford D">DL Swofford</name></author><author><name sortKey="Waddell, Pj" uniqKey="Waddell P">PJ Waddell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name></author><author><name sortKey="Denman, S" uniqKey="Denman S">S Denman</name></author><author><name sortKey="Taylor, Je" uniqKey="Taylor J">JE Taylor</name></author><author><name sortKey="Swart, L" uniqKey="Swart L">L Swart</name></author><author><name sortKey="Palm, Me" uniqKey="Palm M">ME Palm</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name></author><author><name sortKey="Groenewald, Jz" uniqKey="Groenewald J">JZ Groenewald</name></author><author><name sortKey="Taylor, Je" uniqKey="Taylor J">JE Taylor</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name></author><author><name sortKey="Slippers, B" uniqKey="Slippers B">B Slippers</name></author><author><name sortKey="Wingfield, Mj" uniqKey="Wingfield M">MJ Wingfield</name></author><author><name sortKey="Rheeder, J" uniqKey="Rheeder J">J Rheeder</name></author><author><name sortKey="Marasas, Wfo" uniqKey="Marasas W">WFO Marasas</name></author><author><name sortKey="Philips, Ajl" uniqKey="Philips A">AJL Philips</name></author><author><name sortKey="Alves, A" uniqKey="Alves A">A Alves</name></author><author><name sortKey="Burgess, T" uniqKey="Burgess T">T Burgess</name></author><author><name sortKey="Barber, P" uniqKey="Barber P">P Barber</name></author><author><name sortKey="Groenewald, Jz" uniqKey="Groenewald J">JZ Groenewald</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name></author><author><name sortKey="Wood, Ar" uniqKey="Wood A">AR Wood</name></author><author><name sortKey="Okada, G" uniqKey="Okada G">G Okada</name></author><author><name sortKey="Groenewald, Jz" uniqKey="Groenewald J">JZ 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