The pineapple genome and the evolution of CAM photosynthesis
Identifieur interne : 002716 ( Main/Curation ); précédent : 002715; suivant : 002717The pineapple genome and the evolution of CAM photosynthesis
Auteurs : Ray Ming [République populaire de Chine, États-Unis] ; Robert Vanburen [République populaire de Chine, États-Unis] ; Ching Man Wai [République populaire de Chine, États-Unis] ; Haibao Tang [République populaire de Chine, États-Unis] ; Michael C. Schatz [États-Unis] ; John E. Bowers [États-Unis] ; Eric Lyons [États-Unis] ; Ming-Li Wang [États-Unis] ; Jung Chen [États-Unis] ; Eric Biggers [États-Unis] ; Jisen Zhang [République populaire de Chine] ; Lixian Huang [République populaire de Chine] ; Lingmao Zhang [République populaire de Chine] ; Wenjing Miao [République populaire de Chine] ; Jian Zhang [République populaire de Chine] ; Zhangyao Ye [République populaire de Chine] ; Chenyong Miao [République populaire de Chine] ; Zhicong Lin [République populaire de Chine] ; Hao Wang [États-Unis] ; Hongye Zhou [États-Unis] ; Won C. Yim [États-Unis] ; Henry D. Priest [États-Unis] ; Chunfang Zheng [Canada] ; Margaret Woodhouse [États-Unis] ; Patrick P. Edger [États-Unis] ; Romain Guyot [France] ; Hao-Bo Guo [États-Unis] ; Hong Guo [États-Unis] ; Guangyong Zheng [République populaire de Chine] ; Ratnesh Singh [États-Unis] ; Anupma Sharma [États-Unis] ; Xiangjia Min [États-Unis] ; Yun Zheng [République populaire de Chine] ; Hayan Lee [États-Unis] ; James Gurtowski [États-Unis] ; Fritz J. Sedlazeck [États-Unis] ; Alex Harkess [États-Unis] ; Michael R. Mckain [États-Unis] ; Zhenyang Liao [République populaire de Chine] ; Jingping Fang [République populaire de Chine] ; Juan Liu [République populaire de Chine] ; Xiaodan Zhang [République populaire de Chine] ; Qing Zhang [République populaire de Chine] ; Weichang Hu [République populaire de Chine] ; Yuan Qin [République populaire de Chine] ; Kai Wang [République populaire de Chine] ; Li-Yu Chen [République populaire de Chine] ; Neil Shirley [Australie] ; Yann-Rong Lin [Taïwan] ; Li-Yu Liu [Taïwan] ; Alvaro G. Hernandez [États-Unis] ; Chris L. Wright [États-Unis] ; Vincent Bulone [Australie] ; Gerald A. Tuskan [États-Unis] ; Katy Heath [États-Unis] ; Francis Zee [États-Unis] ; Paul H. Moore [États-Unis] ; Ramanjulu Sunkar [États-Unis] ; James H. Leebens-Mack [États-Unis] ; Todd Mockler [États-Unis] ; Jeffrey L. Bennetzen [États-Unis] ; Michael Freeling [États-Unis] ; David Sankoff [Canada] ; Andrew H. Paterson [États-Unis] ; Xinguang Zhu [République populaire de Chine] ; Xiaohan Yang [États-Unis] ; J. Andrew C. Smith [Royaume-Uni] ; John C. Cushman [États-Unis] ; Robert E. Paull [États-Unis] ; Qingyi Yu [États-Unis]Source :
- Nature genetics [ 1061-4036 ] ; 2015.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical : Genetic Markers.
- genetics : Ananas.
- methods : Genomics, High-Throughput Nucleotide Sequencing.
- physiology : Photosynthesis.
- Chromosome Mapping, Epigenomics, Evolution, Molecular, Gene Expression Regulation, Plant, Gene Regulatory Networks, Genome, Plant.
Abstract
Pineapple (
Url:
DOI: 10.1038/ng.3435
PubMed: 26523774
PubMed Central: 4867222
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PMC:4867222Le document en format XML
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<author><name sortKey="Zhou, Hongye" sort="Zhou, Hongye" uniqKey="Zhou H" first="Hongye" last="Zhou">Hongye Zhou</name>
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<author><name sortKey="Guo, Hong" sort="Guo, Hong" uniqKey="Guo H" first="Hong" last="Guo">Hong Guo</name>
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<author><name sortKey="Zheng, Guangyong" sort="Zheng, Guangyong" uniqKey="Zheng G" first="Guangyong" last="Zheng">Guangyong Zheng</name>
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<author><name sortKey="Sharma, Anupma" sort="Sharma, Anupma" uniqKey="Sharma A" first="Anupma" last="Sharma">Anupma Sharma</name>
<affiliation wicri:level="2"><nlm:aff id="A15">Texas A&M AgriLife Research, Department of Plant Pathology & Microbiology, Texas A&M University System, Dallas, TX 75252, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Texas A&M AgriLife Research, Department of Plant Pathology & Microbiology, Texas A&M University System, Dallas, TX 75252</wicri:regionArea>
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</placeName>
</affiliation>
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<author><name sortKey="Min, Xiangjia" sort="Min, Xiangjia" uniqKey="Min X" first="Xiangjia" last="Min">Xiangjia Min</name>
<affiliation wicri:level="2"><nlm:aff id="A16">Department of Biological Sciences, Youngstown State University, Youngstown, OH 44555, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biological Sciences, Youngstown State University, Youngstown, OH 44555</wicri:regionArea>
<placeName><region type="state">Ohio</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Zheng, Yun" sort="Zheng, Yun" uniqKey="Zheng Y" first="Yun" last="Zheng">Yun Zheng</name>
<affiliation wicri:level="1"><nlm:aff id="A17">Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, Yunnan 650500, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, Yunnan 650500</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Lee, Hayan" sort="Lee, Hayan" uniqKey="Lee H" first="Hayan" last="Lee">Hayan Lee</name>
<affiliation wicri:level="2"><nlm:aff id="A5">Cold Spring Harbor Laboratory, Cold Spring Harbor, NY11724, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY11724</wicri:regionArea>
<placeName><region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Gurtowski, James" sort="Gurtowski, James" uniqKey="Gurtowski J" first="James" last="Gurtowski">James Gurtowski</name>
<affiliation wicri:level="2"><nlm:aff id="A5">Cold Spring Harbor Laboratory, Cold Spring Harbor, NY11724, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY11724</wicri:regionArea>
<placeName><region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Sedlazeck, Fritz J" sort="Sedlazeck, Fritz J" uniqKey="Sedlazeck F" first="Fritz J." last="Sedlazeck">Fritz J. Sedlazeck</name>
<affiliation wicri:level="2"><nlm:aff id="A5">Cold Spring Harbor Laboratory, Cold Spring Harbor, NY11724, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY11724</wicri:regionArea>
<placeName><region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Harkess, Alex" sort="Harkess, Alex" uniqKey="Harkess A" first="Alex" last="Harkess">Alex Harkess</name>
<affiliation wicri:level="2"><nlm:aff id="A6">Department of Plant Biology, University of Georgia, Athens, GA 30602, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, GA 30602</wicri:regionArea>
<placeName><region type="state">Géorgie (États-Unis)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Mckain, Michael R" sort="Mckain, Michael R" uniqKey="Mckain M" first="Michael R." last="Mckain">Michael R. Mckain</name>
<affiliation wicri:level="2"><nlm:aff id="A3">Donald Danforth Plant Science Center, St. Louis, MO, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Donald Danforth Plant Science Center, St. Louis, MO</wicri:regionArea>
<placeName><region type="state">Missouri (État)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Liao, Zhenyang" sort="Liao, Zhenyang" uniqKey="Liao Z" first="Zhenyang" last="Liao">Zhenyang Liao</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Fang, Jingping" sort="Fang, Jingping" uniqKey="Fang J" first="Jingping" last="Fang">Jingping Fang</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Liu, Juan" sort="Liu, Juan" uniqKey="Liu J" first="Juan" last="Liu">Juan Liu</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhang, Xiaodan" sort="Zhang, Xiaodan" uniqKey="Zhang X" first="Xiaodan" last="Zhang">Xiaodan Zhang</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhang, Qing" sort="Zhang, Qing" uniqKey="Zhang Q" first="Qing" last="Zhang">Qing Zhang</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hu, Weichang" sort="Hu, Weichang" uniqKey="Hu W" first="Weichang" last="Hu">Weichang Hu</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Qin, Yuan" sort="Qin, Yuan" uniqKey="Qin Y" first="Yuan" last="Qin">Yuan Qin</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wang, Kai" sort="Wang, Kai" uniqKey="Wang K" first="Kai" last="Wang">Kai Wang</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chen, Li Yu" sort="Chen, Li Yu" uniqKey="Chen L" first="Li-Yu" last="Chen">Li-Yu Chen</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Shirley, Neil" sort="Shirley, Neil" uniqKey="Shirley N" first="Neil" last="Shirley">Neil Shirley</name>
<affiliation wicri:level="1"><nlm:aff id="A18">ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, South Australia 5064, Australia</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, South Australia 5064</wicri:regionArea>
<wicri:noRegion>South Australia 5064</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Lin, Yann Rong" sort="Lin, Yann Rong" uniqKey="Lin Y" first="Yann-Rong" last="Lin">Yann-Rong Lin</name>
<affiliation wicri:level="1"><nlm:aff id="A19">Department of Agronomy, National Taiwan University, Taipei 10617, Taiwan</nlm:aff>
<country xml:lang="fr">Taïwan</country>
<wicri:regionArea>Department of Agronomy, National Taiwan University, Taipei 10617</wicri:regionArea>
<wicri:noRegion>Taipei 10617</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Liu, Li Yu" sort="Liu, Li Yu" uniqKey="Liu L" first="Li-Yu" last="Liu">Li-Yu Liu</name>
<affiliation wicri:level="1"><nlm:aff id="A19">Department of Agronomy, National Taiwan University, Taipei 10617, Taiwan</nlm:aff>
<country xml:lang="fr">Taïwan</country>
<wicri:regionArea>Department of Agronomy, National Taiwan University, Taipei 10617</wicri:regionArea>
<wicri:noRegion>Taipei 10617</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hernandez, Alvaro G" sort="Hernandez, Alvaro G" uniqKey="Hernandez A" first="Alvaro G." last="Hernandez">Alvaro G. Hernandez</name>
<affiliation wicri:level="2"><nlm:aff id="A20">W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea>
<placeName><region type="state">Illinois</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Wright, Chris L" sort="Wright, Chris L" uniqKey="Wright C" first="Chris L." last="Wright">Chris L. Wright</name>
<affiliation wicri:level="2"><nlm:aff id="A20">W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea>
<placeName><region type="state">Illinois</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Bulone, Vincent" sort="Bulone, Vincent" uniqKey="Bulone V" first="Vincent" last="Bulone">Vincent Bulone</name>
<affiliation wicri:level="1"><nlm:aff id="A18">ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, South Australia 5064, Australia</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, South Australia 5064</wicri:regionArea>
<wicri:noRegion>South Australia 5064</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Tuskan, Gerald A" sort="Tuskan, Gerald A" uniqKey="Tuskan G" first="Gerald A." last="Tuskan">Gerald A. Tuskan</name>
<affiliation wicri:level="2"><nlm:aff id="A21">Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Heath, Katy" sort="Heath, Katy" uniqKey="Heath K" first="Katy" last="Heath">Katy Heath</name>
<affiliation wicri:level="2"><nlm:aff id="A2">Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea>
<placeName><region type="state">Illinois</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Zee, Francis" sort="Zee, Francis" uniqKey="Zee F" first="Francis" last="Zee">Francis Zee</name>
<affiliation wicri:level="2"><nlm:aff id="A22">USDA-ARS, Pacific Basin Agricultural Research Center, Hilo, HI 96720, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>USDA-ARS, Pacific Basin Agricultural Research Center, Hilo, HI 96720</wicri:regionArea>
<placeName><region type="state">Hawaï</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Moore, Paul H" sort="Moore, Paul H" uniqKey="Moore P" first="Paul H." last="Moore">Paul H. Moore</name>
<affiliation wicri:level="2"><nlm:aff id="A7">Hawaii Agriculture Research Center, Kunia, HI 96759, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Hawaii Agriculture Research Center, Kunia, HI 96759</wicri:regionArea>
<placeName><region type="state">Hawaï</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Sunkar, Ramanjulu" sort="Sunkar, Ramanjulu" uniqKey="Sunkar R" first="Ramanjulu" last="Sunkar">Ramanjulu Sunkar</name>
<affiliation wicri:level="2"><nlm:aff id="A23">Department of Biochemistry and Molecular Biology, 246 Noble Research Center, Oklahoma State University, Stillwater, OK 74078, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biochemistry and Molecular Biology, 246 Noble Research Center, Oklahoma State University, Stillwater, OK 74078</wicri:regionArea>
<placeName><region type="state">Oklahoma</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Leebens Mack, James H" sort="Leebens Mack, James H" uniqKey="Leebens Mack J" first="James H." last="Leebens-Mack">James H. Leebens-Mack</name>
<affiliation wicri:level="2"><nlm:aff id="A6">Department of Plant Biology, University of Georgia, Athens, GA 30602, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, GA 30602</wicri:regionArea>
<placeName><region type="state">Géorgie (États-Unis)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Mockler, Todd" sort="Mockler, Todd" uniqKey="Mockler T" first="Todd" last="Mockler">Todd Mockler</name>
<affiliation wicri:level="2"><nlm:aff id="A3">Donald Danforth Plant Science Center, St. Louis, MO, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Donald Danforth Plant Science Center, St. Louis, MO</wicri:regionArea>
<placeName><region type="state">Missouri (État)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Bennetzen, Jeffrey L" sort="Bennetzen, Jeffrey L" uniqKey="Bennetzen J" first="Jeffrey L." last="Bennetzen">Jeffrey L. Bennetzen</name>
<affiliation wicri:level="2"><nlm:aff id="A6">Department of Plant Biology, University of Georgia, Athens, GA 30602, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, GA 30602</wicri:regionArea>
<placeName><region type="state">Géorgie (États-Unis)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Freeling, Michael" sort="Freeling, Michael" uniqKey="Freeling M" first="Michael" last="Freeling">Michael Freeling</name>
<affiliation wicri:level="2"><nlm:aff id="A11">Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Sankoff, David" sort="Sankoff, David" uniqKey="Sankoff D" first="David" last="Sankoff">David Sankoff</name>
<affiliation wicri:level="1"><nlm:aff id="A10">Department of Mathematics and Statistics, University of Ottawa, Ottawa, Canada K1N 6N5</nlm:aff>
<country>Canada</country>
<wicri:regionArea>Department of Mathematics and Statistics, University of Ottawa, Ottawa</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Paterson, Andrew H" sort="Paterson, Andrew H" uniqKey="Paterson A" first="Andrew H." last="Paterson">Andrew H. Paterson</name>
<affiliation wicri:level="2"><nlm:aff id="A24">Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602</wicri:regionArea>
<placeName><region type="state">Géorgie (États-Unis)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Zhu, Xinguang" sort="Zhu, Xinguang" uniqKey="Zhu X" first="Xinguang" last="Zhu">Xinguang Zhu</name>
<affiliation wicri:level="1"><nlm:aff id="A14">Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Yang, Xiaohan" sort="Yang, Xiaohan" uniqKey="Yang X" first="Xiaohan" last="Yang">Xiaohan Yang</name>
<affiliation wicri:level="2"><nlm:aff id="A21">Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Smith, J Andrew C" sort="Smith, J Andrew C" uniqKey="Smith J" first="J. Andrew C." last="Smith">J. Andrew C. Smith</name>
<affiliation wicri:level="4"><nlm:aff id="A25">Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB</wicri:regionArea>
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</placeName>
</affiliation>
</author>
<author><name sortKey="Cushman, John C" sort="Cushman, John C" uniqKey="Cushman J" first="John C." last="Cushman">John C. Cushman</name>
<affiliation wicri:level="2"><nlm:aff id="A9">Department of Biochemistry and Molecular Biology, MS330, University of Nevada, Reno, NV 89557-0330, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biochemistry and Molecular Biology, MS330, University of Nevada, Reno, NV 89557-0330</wicri:regionArea>
<placeName><region type="state">Nevada</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Paull, Robert E" sort="Paull, Robert E" uniqKey="Paull R" first="Robert E." last="Paull">Robert E. Paull</name>
<affiliation wicri:level="2"><nlm:aff id="A8">Department of Tropical Plant and Soil Sciences, University of Hawaii, Honolulu, HI 96822, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Tropical Plant and Soil Sciences, University of Hawaii, Honolulu, HI 96822</wicri:regionArea>
<placeName><region type="state">Hawaï</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Yu, Qingyi" sort="Yu, Qingyi" uniqKey="Yu Q" first="Qingyi" last="Yu">Qingyi Yu</name>
<affiliation wicri:level="2"><nlm:aff id="A15">Texas A&M AgriLife Research, Department of Plant Pathology & Microbiology, Texas A&M University System, Dallas, TX 75252, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Texas A&M AgriLife Research, Department of Plant Pathology & Microbiology, Texas A&M University System, Dallas, TX 75252</wicri:regionArea>
<placeName><region type="state">Texas</region>
</placeName>
</affiliation>
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<country xml:lang="fr">États-Unis</country>
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<country xml:lang="fr">États-Unis</country>
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<author><name sortKey="Wang, Ming Li" sort="Wang, Ming Li" uniqKey="Wang M" first="Ming-Li" last="Wang">Ming-Li Wang</name>
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<author><name sortKey="Chen, Jung" sort="Chen, Jung" uniqKey="Chen J" first="Jung" last="Chen">Jung Chen</name>
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<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Tropical Plant and Soil Sciences, University of Hawaii, Honolulu, HI 96822</wicri:regionArea>
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<author><name sortKey="Zhang, Jisen" sort="Zhang, Jisen" uniqKey="Zhang J" first="Jisen" last="Zhang">Jisen Zhang</name>
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<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Zhang, Lingmao" sort="Zhang, Lingmao" uniqKey="Zhang L" first="Lingmao" last="Zhang">Lingmao Zhang</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
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</author>
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<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Zhang, Jian" sort="Zhang, Jian" uniqKey="Zhang J" first="Jian" last="Zhang">Jian Zhang</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Ye, Zhangyao" sort="Ye, Zhangyao" uniqKey="Ye Z" first="Zhangyao" last="Ye">Zhangyao Ye</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
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</author>
<author><name sortKey="Miao, Chenyong" sort="Miao, Chenyong" uniqKey="Miao C" first="Chenyong" last="Miao">Chenyong Miao</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
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<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
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<author><name sortKey="Wang, Hao" sort="Wang, Hao" uniqKey="Wang H" first="Hao" last="Wang">Hao Wang</name>
<affiliation wicri:level="2"><nlm:aff id="A6">Department of Plant Biology, University of Georgia, Athens, GA 30602, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, GA 30602</wicri:regionArea>
<placeName><region type="state">Géorgie (États-Unis)</region>
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</affiliation>
</author>
<author><name sortKey="Zhou, Hongye" sort="Zhou, Hongye" uniqKey="Zhou H" first="Hongye" last="Zhou">Hongye Zhou</name>
<affiliation wicri:level="2"><nlm:aff id="A6">Department of Plant Biology, University of Georgia, Athens, GA 30602, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, GA 30602</wicri:regionArea>
<placeName><region type="state">Géorgie (États-Unis)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Yim, Won C" sort="Yim, Won C" uniqKey="Yim W" first="Won C." last="Yim">Won C. Yim</name>
<affiliation wicri:level="2"><nlm:aff id="A9">Department of Biochemistry and Molecular Biology, MS330, University of Nevada, Reno, NV 89557-0330, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biochemistry and Molecular Biology, MS330, University of Nevada, Reno, NV 89557-0330</wicri:regionArea>
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</placeName>
</affiliation>
</author>
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<affiliation wicri:level="2"><nlm:aff id="A3">Donald Danforth Plant Science Center, St. Louis, MO, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
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<placeName><region type="state">Missouri (État)</region>
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</affiliation>
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<affiliation wicri:level="1"><nlm:aff id="A10">Department of Mathematics and Statistics, University of Ottawa, Ottawa, Canada K1N 6N5</nlm:aff>
<country>Canada</country>
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<affiliation wicri:level="2"><nlm:aff id="A11">Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
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<affiliation wicri:level="2"><nlm:aff id="A11">Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720</wicri:regionArea>
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</placeName>
</affiliation>
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<country xml:lang="fr">États-Unis</country>
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</placeName>
</affiliation>
</author>
<author><name sortKey="Guo, Hong" sort="Guo, Hong" uniqKey="Guo H" first="Hong" last="Guo">Hong Guo</name>
<affiliation wicri:level="2"><nlm:aff id="A13">Department of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Zheng, Guangyong" sort="Zheng, Guangyong" uniqKey="Zheng G" first="Guangyong" last="Zheng">Guangyong Zheng</name>
<affiliation wicri:level="1"><nlm:aff id="A14">Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China</nlm:aff>
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<affiliation wicri:level="2"><nlm:aff id="A15">Texas A&M AgriLife Research, Department of Plant Pathology & Microbiology, Texas A&M University System, Dallas, TX 75252, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Texas A&M AgriLife Research, Department of Plant Pathology & Microbiology, Texas A&M University System, Dallas, TX 75252</wicri:regionArea>
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</placeName>
</affiliation>
</author>
<author><name sortKey="Sharma, Anupma" sort="Sharma, Anupma" uniqKey="Sharma A" first="Anupma" last="Sharma">Anupma Sharma</name>
<affiliation wicri:level="2"><nlm:aff id="A15">Texas A&M AgriLife Research, Department of Plant Pathology & Microbiology, Texas A&M University System, Dallas, TX 75252, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Texas A&M AgriLife Research, Department of Plant Pathology & Microbiology, Texas A&M University System, Dallas, TX 75252</wicri:regionArea>
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</placeName>
</affiliation>
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<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biological Sciences, Youngstown State University, Youngstown, OH 44555</wicri:regionArea>
<placeName><region type="state">Ohio</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Zheng, Yun" sort="Zheng, Yun" uniqKey="Zheng Y" first="Yun" last="Zheng">Yun Zheng</name>
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<author><name sortKey="Lee, Hayan" sort="Lee, Hayan" uniqKey="Lee H" first="Hayan" last="Lee">Hayan Lee</name>
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</placeName>
</affiliation>
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<author><name sortKey="Gurtowski, James" sort="Gurtowski, James" uniqKey="Gurtowski J" first="James" last="Gurtowski">James Gurtowski</name>
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<country xml:lang="fr">États-Unis</country>
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</affiliation>
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<author><name sortKey="Sedlazeck, Fritz J" sort="Sedlazeck, Fritz J" uniqKey="Sedlazeck F" first="Fritz J." last="Sedlazeck">Fritz J. Sedlazeck</name>
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<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY11724</wicri:regionArea>
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</placeName>
</affiliation>
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<author><name sortKey="Harkess, Alex" sort="Harkess, Alex" uniqKey="Harkess A" first="Alex" last="Harkess">Alex Harkess</name>
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<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, GA 30602</wicri:regionArea>
<placeName><region type="state">Géorgie (États-Unis)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Mckain, Michael R" sort="Mckain, Michael R" uniqKey="Mckain M" first="Michael R." last="Mckain">Michael R. Mckain</name>
<affiliation wicri:level="2"><nlm:aff id="A3">Donald Danforth Plant Science Center, St. Louis, MO, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Donald Danforth Plant Science Center, St. Louis, MO</wicri:regionArea>
<placeName><region type="state">Missouri (État)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Liao, Zhenyang" sort="Liao, Zhenyang" uniqKey="Liao Z" first="Zhenyang" last="Liao">Zhenyang Liao</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Fang, Jingping" sort="Fang, Jingping" uniqKey="Fang J" first="Jingping" last="Fang">Jingping Fang</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Liu, Juan" sort="Liu, Juan" uniqKey="Liu J" first="Juan" last="Liu">Juan Liu</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhang, Xiaodan" sort="Zhang, Xiaodan" uniqKey="Zhang X" first="Xiaodan" last="Zhang">Xiaodan Zhang</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhang, Qing" sort="Zhang, Qing" uniqKey="Zhang Q" first="Qing" last="Zhang">Qing Zhang</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hu, Weichang" sort="Hu, Weichang" uniqKey="Hu W" first="Weichang" last="Hu">Weichang Hu</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Qin, Yuan" sort="Qin, Yuan" uniqKey="Qin Y" first="Yuan" last="Qin">Yuan Qin</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wang, Kai" sort="Wang, Kai" uniqKey="Wang K" first="Kai" last="Wang">Kai Wang</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chen, Li Yu" sort="Chen, Li Yu" uniqKey="Chen L" first="Li-Yu" last="Chen">Li-Yu Chen</name>
<affiliation wicri:level="1"><nlm:aff id="A1">FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002</wicri:regionArea>
<wicri:noRegion>350002</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Shirley, Neil" sort="Shirley, Neil" uniqKey="Shirley N" first="Neil" last="Shirley">Neil Shirley</name>
<affiliation wicri:level="1"><nlm:aff id="A18">ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, South Australia 5064, Australia</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, South Australia 5064</wicri:regionArea>
<wicri:noRegion>South Australia 5064</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Lin, Yann Rong" sort="Lin, Yann Rong" uniqKey="Lin Y" first="Yann-Rong" last="Lin">Yann-Rong Lin</name>
<affiliation wicri:level="1"><nlm:aff id="A19">Department of Agronomy, National Taiwan University, Taipei 10617, Taiwan</nlm:aff>
<country xml:lang="fr">Taïwan</country>
<wicri:regionArea>Department of Agronomy, National Taiwan University, Taipei 10617</wicri:regionArea>
<wicri:noRegion>Taipei 10617</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Liu, Li Yu" sort="Liu, Li Yu" uniqKey="Liu L" first="Li-Yu" last="Liu">Li-Yu Liu</name>
<affiliation wicri:level="1"><nlm:aff id="A19">Department of Agronomy, National Taiwan University, Taipei 10617, Taiwan</nlm:aff>
<country xml:lang="fr">Taïwan</country>
<wicri:regionArea>Department of Agronomy, National Taiwan University, Taipei 10617</wicri:regionArea>
<wicri:noRegion>Taipei 10617</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hernandez, Alvaro G" sort="Hernandez, Alvaro G" uniqKey="Hernandez A" first="Alvaro G." last="Hernandez">Alvaro G. Hernandez</name>
<affiliation wicri:level="2"><nlm:aff id="A20">W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea>
<placeName><region type="state">Illinois</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Wright, Chris L" sort="Wright, Chris L" uniqKey="Wright C" first="Chris L." last="Wright">Chris L. Wright</name>
<affiliation wicri:level="2"><nlm:aff id="A20">W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea>
<placeName><region type="state">Illinois</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Bulone, Vincent" sort="Bulone, Vincent" uniqKey="Bulone V" first="Vincent" last="Bulone">Vincent Bulone</name>
<affiliation wicri:level="1"><nlm:aff id="A18">ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, South Australia 5064, Australia</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, South Australia 5064</wicri:regionArea>
<wicri:noRegion>South Australia 5064</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Tuskan, Gerald A" sort="Tuskan, Gerald A" uniqKey="Tuskan G" first="Gerald A." last="Tuskan">Gerald A. Tuskan</name>
<affiliation wicri:level="2"><nlm:aff id="A21">Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Heath, Katy" sort="Heath, Katy" uniqKey="Heath K" first="Katy" last="Heath">Katy Heath</name>
<affiliation wicri:level="2"><nlm:aff id="A2">Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea>
<placeName><region type="state">Illinois</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Zee, Francis" sort="Zee, Francis" uniqKey="Zee F" first="Francis" last="Zee">Francis Zee</name>
<affiliation wicri:level="2"><nlm:aff id="A22">USDA-ARS, Pacific Basin Agricultural Research Center, Hilo, HI 96720, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>USDA-ARS, Pacific Basin Agricultural Research Center, Hilo, HI 96720</wicri:regionArea>
<placeName><region type="state">Hawaï</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Moore, Paul H" sort="Moore, Paul H" uniqKey="Moore P" first="Paul H." last="Moore">Paul H. Moore</name>
<affiliation wicri:level="2"><nlm:aff id="A7">Hawaii Agriculture Research Center, Kunia, HI 96759, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Hawaii Agriculture Research Center, Kunia, HI 96759</wicri:regionArea>
<placeName><region type="state">Hawaï</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Sunkar, Ramanjulu" sort="Sunkar, Ramanjulu" uniqKey="Sunkar R" first="Ramanjulu" last="Sunkar">Ramanjulu Sunkar</name>
<affiliation wicri:level="2"><nlm:aff id="A23">Department of Biochemistry and Molecular Biology, 246 Noble Research Center, Oklahoma State University, Stillwater, OK 74078, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biochemistry and Molecular Biology, 246 Noble Research Center, Oklahoma State University, Stillwater, OK 74078</wicri:regionArea>
<placeName><region type="state">Oklahoma</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Leebens Mack, James H" sort="Leebens Mack, James H" uniqKey="Leebens Mack J" first="James H." last="Leebens-Mack">James H. Leebens-Mack</name>
<affiliation wicri:level="2"><nlm:aff id="A6">Department of Plant Biology, University of Georgia, Athens, GA 30602, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, GA 30602</wicri:regionArea>
<placeName><region type="state">Géorgie (États-Unis)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Mockler, Todd" sort="Mockler, Todd" uniqKey="Mockler T" first="Todd" last="Mockler">Todd Mockler</name>
<affiliation wicri:level="2"><nlm:aff id="A3">Donald Danforth Plant Science Center, St. Louis, MO, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Donald Danforth Plant Science Center, St. Louis, MO</wicri:regionArea>
<placeName><region type="state">Missouri (État)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Bennetzen, Jeffrey L" sort="Bennetzen, Jeffrey L" uniqKey="Bennetzen J" first="Jeffrey L." last="Bennetzen">Jeffrey L. Bennetzen</name>
<affiliation wicri:level="2"><nlm:aff id="A6">Department of Plant Biology, University of Georgia, Athens, GA 30602, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, GA 30602</wicri:regionArea>
<placeName><region type="state">Géorgie (États-Unis)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Freeling, Michael" sort="Freeling, Michael" uniqKey="Freeling M" first="Michael" last="Freeling">Michael Freeling</name>
<affiliation wicri:level="2"><nlm:aff id="A11">Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Sankoff, David" sort="Sankoff, David" uniqKey="Sankoff D" first="David" last="Sankoff">David Sankoff</name>
<affiliation wicri:level="1"><nlm:aff id="A10">Department of Mathematics and Statistics, University of Ottawa, Ottawa, Canada K1N 6N5</nlm:aff>
<country>Canada</country>
<wicri:regionArea>Department of Mathematics and Statistics, University of Ottawa, Ottawa</wicri:regionArea>
<wicri:noRegion>Ottawa</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Paterson, Andrew H" sort="Paterson, Andrew H" uniqKey="Paterson A" first="Andrew H." last="Paterson">Andrew H. Paterson</name>
<affiliation wicri:level="2"><nlm:aff id="A24">Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602</wicri:regionArea>
<placeName><region type="state">Géorgie (États-Unis)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Zhu, Xinguang" sort="Zhu, Xinguang" uniqKey="Zhu X" first="Xinguang" last="Zhu">Xinguang Zhu</name>
<affiliation wicri:level="1"><nlm:aff id="A14">Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031</wicri:regionArea>
<wicri:noRegion>Shanghai 200031</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Yang, Xiaohan" sort="Yang, Xiaohan" uniqKey="Yang X" first="Xiaohan" last="Yang">Xiaohan Yang</name>
<affiliation wicri:level="2"><nlm:aff id="A21">Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Smith, J Andrew C" sort="Smith, J Andrew C" uniqKey="Smith J" first="J. Andrew C." last="Smith">J. Andrew C. Smith</name>
<affiliation wicri:level="4"><nlm:aff id="A25">Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB</wicri:regionArea>
<orgName type="university">Université d'Oxford</orgName>
<placeName><settlement type="city">Oxford</settlement>
<region type="nation">Angleterre</region>
<region type="région" nuts="1">Oxfordshire</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Cushman, John C" sort="Cushman, John C" uniqKey="Cushman J" first="John C." last="Cushman">John C. Cushman</name>
<affiliation wicri:level="2"><nlm:aff id="A9">Department of Biochemistry and Molecular Biology, MS330, University of Nevada, Reno, NV 89557-0330, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biochemistry and Molecular Biology, MS330, University of Nevada, Reno, NV 89557-0330</wicri:regionArea>
<placeName><region type="state">Nevada</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Paull, Robert E" sort="Paull, Robert E" uniqKey="Paull R" first="Robert E." last="Paull">Robert E. Paull</name>
<affiliation wicri:level="2"><nlm:aff id="A8">Department of Tropical Plant and Soil Sciences, University of Hawaii, Honolulu, HI 96822, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Tropical Plant and Soil Sciences, University of Hawaii, Honolulu, HI 96822</wicri:regionArea>
<placeName><region type="state">Hawaï</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Yu, Qingyi" sort="Yu, Qingyi" uniqKey="Yu Q" first="Qingyi" last="Yu">Qingyi Yu</name>
<affiliation wicri:level="2"><nlm:aff id="A15">Texas A&M AgriLife Research, Department of Plant Pathology & Microbiology, Texas A&M University System, Dallas, TX 75252, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Texas A&M AgriLife Research, Department of Plant Pathology & Microbiology, Texas A&M University System, Dallas, TX 75252</wicri:regionArea>
<placeName><region type="state">Texas</region>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">Nature genetics</title>
<idno type="ISSN">1061-4036</idno>
<idno type="eISSN">1546-1718</idno>
<imprint><date when="2015">2015</date>
</imprint>
</series>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ananas (genetics)</term>
<term>Chromosome Mapping</term>
<term>Epigenomics</term>
<term>Evolution, Molecular</term>
<term>Gene Expression Regulation, Plant</term>
<term>Gene Regulatory Networks</term>
<term>Genetic Markers</term>
<term>Genome, Plant</term>
<term>Genomics (methods)</term>
<term>High-Throughput Nucleotide Sequencing (methods)</term>
<term>Photosynthesis (physiology)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Ananas (génétique)</term>
<term>Cartographie chromosomique</term>
<term>Génome végétal</term>
<term>Génomique ()</term>
<term>Marqueurs génétiques</term>
<term>Photosynthèse (physiologie)</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Réseaux de régulation génique</term>
<term>Séquençage nucléotidique à haut débit ()</term>
<term>Épigénomique</term>
<term>Évolution moléculaire</term>
</keywords>
<keywords scheme="MESH" type="chemical" xml:lang="en"><term>Genetic Markers</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Ananas</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Ananas</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Genomics</term>
<term>High-Throughput Nucleotide Sequencing</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Photosynthèse</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Photosynthesis</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term>
<term>Epigenomics</term>
<term>Evolution, Molecular</term>
<term>Gene Expression Regulation, Plant</term>
<term>Gene Regulatory Networks</term>
<term>Genome, Plant</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term>
<term>Génome végétal</term>
<term>Génomique</term>
<term>Marqueurs génétiques</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Réseaux de régulation génique</term>
<term>Séquençage nucléotidique à haut débit</term>
<term>Épigénomique</term>
<term>Évolution moléculaire</term>
</keywords>
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<front><div type="abstract" xml:lang="en"><p id="P1">Pineapple (<italic>Ananas comosus</italic>
(L.) Merr.) is the most economically valuable crop possessing crassulacean acid metabolism (CAM), a photosynthetic carbon assimilation pathway with high water use efficiency, and the second most important tropical fruit after banana in terms of international trade. We sequenced the genomes of pineapple varieties ‘F153’ and ‘MD2’, and a wild pineapple relative <italic>A. bracteatus</italic>
accession CB5. The pineapple genome has one fewer ancient whole genome duplications than sequenced grass genomes and, therefore, provides an important reference for elucidating gene content and structure in the last common ancestor of extant members of the grass family (Poaceae). Pineapple has a conserved karyotype with seven pre rho duplication chromosomes that are ancestral to extant grass karyotypes. The pineapple lineage has transitioned from C<sub>3</sub>
photosynthesis to CAM with CAM-related genes exhibiting a diel expression pattern in photosynthetic tissues using beta-carbonic anhydrase (βCA) for initial capture of CO<sub>2</sub>
. Promoter regions of all three β<italic>CA</italic>
genes contain a CCA1 binding site that can bind circadian core oscillators. CAM pathway genes were enriched with <italic>cis</italic>
-regulatory elements including the morning (CCACAC) and evening (AAAATATC) elements associated with regulation of circadian-clock genes, providing the first link between CAM and the circadian clock regulation. Gene-interaction network analysis revealed both activation and repression of regulatory elements that control key enzymes in CAM photosynthesis, indicating that CAM evolved by reconfiguration of pathways preexisting in C<sub>3</sub>
plants. Pineapple CAM photosynthesis is the result of regulatory neofunctionalization of preexisting gene copies and not acquisition of neofunctionalized genes via whole genome or tandem gene duplication.</p>
</div>
</front>
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