The pineapple genome and the evolution of CAM photosynthesis.
Identifieur interne : 002541 ( PubMed/Curation ); précédent : 002540; suivant : 002542The pineapple genome and the evolution of CAM photosynthesis.
Auteurs : Ray Ming [République populaire de Chine] ; Robert Vanburen [République populaire de Chine] ; Ching Man Wai [République populaire de Chine] ; Haibao Tang [République populaire de Chine] ; Michael C. Schatz [États-Unis] ; John E. Bowers [États-Unis] ; Eric Lyons [États-Unis] ; Ming-Li Wang [États-Unis] ; Jung Chen [États-Unis] ; Eric Biggers [États-Unis] ; Jisen Zhang [République populaire de Chine] ; Lixian Huang [République populaire de Chine] ; Lingmao Zhang [République populaire de Chine] ; Wenjing Miao [République populaire de Chine] ; Jian Zhang [République populaire de Chine] ; Zhangyao Ye [République populaire de Chine] ; Chenyong Miao [République populaire de Chine] ; Zhicong Lin [République populaire de Chine] ; Hao Wang [États-Unis] ; Hongye Zhou [États-Unis] ; Won C. Yim [États-Unis] ; Henry D. Priest [États-Unis] ; Chunfang Zheng [Canada] ; Margaret Woodhouse [États-Unis] ; Patrick P. Edger [États-Unis] ; Romain Guyot [France] ; Hao-Bo Guo [États-Unis] ; Hong Guo [États-Unis] ; Guangyong Zheng [République populaire de Chine] ; Ratnesh Singh [États-Unis] ; Anupma Sharma [États-Unis] ; Xiangjia Min [États-Unis] ; Yun Zheng [République populaire de Chine] ; Hayan Lee [États-Unis] ; James Gurtowski [États-Unis] ; Fritz J. Sedlazeck [États-Unis] ; Alex Harkess [États-Unis] ; Michael R. Mckain [États-Unis] ; Zhenyang Liao [République populaire de Chine] ; Jingping Fang [République populaire de Chine] ; Juan Liu [République populaire de Chine] ; Xiaodan Zhang [République populaire de Chine] ; Qing Zhang [République populaire de Chine] ; Weichang Hu [République populaire de Chine] ; Yuan Qin [République populaire de Chine] ; Kai Wang [République populaire de Chine] ; Li-Yu Chen [République populaire de Chine] ; Neil Shirley [Australie] ; Yann-Rong Lin [Taïwan] ; Li-Yu Liu [Taïwan] ; Alvaro G. Hernandez [États-Unis] ; Chris L. Wright [États-Unis] ; Vincent Bulone [Australie] ; Gerald A. Tuskan [États-Unis] ; Katy Heath [États-Unis] ; Francis Zee [États-Unis] ; Paul H. Moore [États-Unis] ; Ramanjulu Sunkar [États-Unis] ; James H. Leebens-Mack [États-Unis] ; Todd Mockler [États-Unis] ; Jeffrey L. Bennetzen [États-Unis] ; Michael Freeling [États-Unis] ; David Sankoff [Canada] ; Andrew H. Paterson [États-Unis] ; Xinguang Zhu [République populaire de Chine] ; Xiaohan Yang [États-Unis] ; J Andrew C. Smith [Royaume-Uni] ; John C. Cushman [États-Unis] ; Robert E. Paull [États-Unis] ; Qingyi Yu [États-Unis]Source :
- Nature genetics [ 1546-1718 ] ; 2015.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical : Genetic Markers.
- genetics : Ananas.
- methods : Genomics, High-Throughput Nucleotide Sequencing.
- physiology : Photosynthesis.
- Chromosome Mapping, Epigenomics, Evolution, Molecular, Gene Expression Regulation, Plant, Gene Regulatory Networks, Genome, Plant.
Abstract
Pineapple (Ananas comosus (L.) Merr.) is the most economically valuable crop possessing crassulacean acid metabolism (CAM), a photosynthetic carbon assimilation pathway with high water-use efficiency, and the second most important tropical fruit. We sequenced the genomes of pineapple varieties F153 and MD2 and a wild pineapple relative, Ananas bracteatus accession CB5. The pineapple genome has one fewer ancient whole-genome duplication event than sequenced grass genomes and a conserved karyotype with seven chromosomes from before the ρ duplication event. The pineapple lineage has transitioned from C3 photosynthesis to CAM, with CAM-related genes exhibiting a diel expression pattern in photosynthetic tissues. CAM pathway genes were enriched with cis-regulatory elements associated with the regulation of circadian clock genes, providing the first cis-regulatory link between CAM and circadian clock regulation. Pineapple CAM photosynthesis evolved by the reconfiguration of pathways in C3 plants, through the regulatory neofunctionalization of preexisting genes and not through the acquisition of neofunctionalized genes via whole-genome or tandem gene duplication.
DOI: 10.1038/ng.3435
PubMed: 26523774
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Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Hao" sort="Wang, Hao" uniqKey="Wang H" first="Hao" last="Wang">Hao Wang</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, Georgia</wicri:regionArea></affiliation></author><author><name sortKey="Zhou, Hongye" sort="Zhou, Hongye" uniqKey="Zhou H" first="Hongye" last="Zhou">Hongye Zhou</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, Georgia</wicri:regionArea></affiliation></author><author><name sortKey="Yim, Won C" sort="Yim, Won C" uniqKey="Yim W" first="Won C" last="Yim">Won C. Yim</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada</wicri:regionArea></affiliation></author><author><name sortKey="Priest, Henry D" sort="Priest, Henry D" uniqKey="Priest H" first="Henry D" last="Priest">Henry D. Priest</name><affiliation wicri:level="1"><nlm:affiliation>Donald Danforth Plant Science Center, St. Louis, Missouri, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Donald Danforth Plant Science Center, St. Louis, Missouri</wicri:regionArea></affiliation></author><author><name sortKey="Zheng, Chunfang" sort="Zheng, Chunfang" uniqKey="Zheng C" first="Chunfang" last="Zheng">Chunfang Zheng</name><affiliation wicri:level="1"><nlm:affiliation>Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario</wicri:regionArea></affiliation></author><author><name sortKey="Woodhouse, Margaret" sort="Woodhouse, Margaret" uniqKey="Woodhouse M" first="Margaret" last="Woodhouse">Margaret Woodhouse</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California</wicri:regionArea></affiliation></author><author><name sortKey="Edger, Patrick P" sort="Edger, Patrick P" uniqKey="Edger P" first="Patrick P" last="Edger">Patrick P. Edger</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California</wicri:regionArea></affiliation></author><author><name sortKey="Guyot, Romain" sort="Guyot, Romain" uniqKey="Guyot R" first="Romain" last="Guyot">Romain Guyot</name><affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche pour le Développement, Diversité Adaptation et Développement des Plantes, Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Recherche pour le Développement, Diversité Adaptation et Développement des Plantes, Montpellier</wicri:regionArea></affiliation></author><author><name sortKey="Guo, Hao Bo" sort="Guo, Hao Bo" uniqKey="Guo H" first="Hao-Bo" last="Guo">Hao-Bo Guo</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee</wicri:regionArea></affiliation></author><author><name sortKey="Guo, Hong" sort="Guo, Hong" uniqKey="Guo H" first="Hong" last="Guo">Hong Guo</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee</wicri:regionArea></affiliation></author><author><name sortKey="Zheng, Guangyong" sort="Zheng, Guangyong" uniqKey="Zheng G" first="Guangyong" last="Zheng">Guangyong Zheng</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Gesellschaft Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Gesellschaft Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai</wicri:regionArea></affiliation></author><author><name sortKey="Singh, Ratnesh" sort="Singh, Ratnesh" uniqKey="Singh R" first="Ratnesh" last="Singh">Ratnesh Singh</name><affiliation wicri:level="1"><nlm:affiliation>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas</wicri:regionArea></affiliation></author><author><name sortKey="Sharma, Anupma" sort="Sharma, Anupma" uniqKey="Sharma A" first="Anupma" last="Sharma">Anupma Sharma</name><affiliation wicri:level="1"><nlm:affiliation>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas</wicri:regionArea></affiliation></author><author><name sortKey="Min, Xiangjia" sort="Min, Xiangjia" uniqKey="Min X" first="Xiangjia" last="Min">Xiangjia Min</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biological Sciences, Youngstown State University, Youngstown, Ohio, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, Youngstown State University, Youngstown, Ohio</wicri:regionArea></affiliation></author><author><name sortKey="Zheng, Yun" sort="Zheng, Yun" uniqKey="Zheng Y" first="Yun" last="Zheng">Yun Zheng</name><affiliation wicri:level="1"><nlm:affiliation>Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming</wicri:regionArea></affiliation></author><author><name sortKey="Lee, Hayan" sort="Lee, Hayan" uniqKey="Lee H" first="Hayan" last="Lee">Hayan Lee</name><affiliation wicri:level="1"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea></affiliation></author><author><name sortKey="Gurtowski, James" sort="Gurtowski, James" uniqKey="Gurtowski J" first="James" last="Gurtowski">James Gurtowski</name><affiliation wicri:level="1"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea></affiliation></author><author><name sortKey="Sedlazeck, Fritz J" sort="Sedlazeck, Fritz J" uniqKey="Sedlazeck F" first="Fritz J" last="Sedlazeck">Fritz J. Sedlazeck</name><affiliation wicri:level="1"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea></affiliation></author><author><name sortKey="Harkess, Alex" sort="Harkess, Alex" uniqKey="Harkess A" first="Alex" last="Harkess">Alex Harkess</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, Georgia</wicri:regionArea></affiliation></author><author><name sortKey="Mckain, Michael R" sort="Mckain, Michael R" uniqKey="Mckain M" first="Michael R" last="Mckain">Michael R. Mckain</name><affiliation wicri:level="1"><nlm:affiliation>Donald Danforth Plant Science Center, St. Louis, Missouri, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Donald Danforth Plant Science Center, St. Louis, Missouri</wicri:regionArea></affiliation></author><author><name sortKey="Liao, Zhenyang" sort="Liao, Zhenyang" uniqKey="Liao Z" first="Zhenyang" last="Liao">Zhenyang Liao</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Fang, Jingping" sort="Fang, Jingping" uniqKey="Fang J" first="Jingping" last="Fang">Jingping Fang</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Juan" sort="Liu, Juan" uniqKey="Liu J" first="Juan" last="Liu">Juan Liu</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Xiaodan" sort="Zhang, Xiaodan" uniqKey="Zhang X" first="Xiaodan" last="Zhang">Xiaodan Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Qing" sort="Zhang, Qing" uniqKey="Zhang Q" first="Qing" last="Zhang">Qing Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Hu, Weichang" sort="Hu, Weichang" uniqKey="Hu W" first="Weichang" last="Hu">Weichang Hu</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Qin, Yuan" sort="Qin, Yuan" uniqKey="Qin Y" first="Yuan" last="Qin">Yuan Qin</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Kai" sort="Wang, Kai" uniqKey="Wang K" first="Kai" last="Wang">Kai Wang</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Chen, Li Yu" sort="Chen, Li Yu" uniqKey="Chen L" first="Li-Yu" last="Chen">Li-Yu Chen</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Shirley, Neil" sort="Shirley, Neil" uniqKey="Shirley N" first="Neil" last="Shirley">Neil Shirley</name><affiliation wicri:level="1"><nlm:affiliation>Australian Research Council (ARC) Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, Adelaide, South Australia, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council (ARC) Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, Adelaide, South Australia</wicri:regionArea></affiliation></author><author><name sortKey="Lin, Yann Rong" sort="Lin, Yann Rong" uniqKey="Lin Y" first="Yann-Rong" last="Lin">Yann-Rong Lin</name><affiliation wicri:level="1"><nlm:affiliation>Department of Agronomy, National Taiwan University, Taipei, Taiwan.</nlm:affiliation><country xml:lang="fr">Taïwan</country><wicri:regionArea>Department of Agronomy, National Taiwan University, Taipei</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Li Yu" sort="Liu, Li Yu" uniqKey="Liu L" first="Li-Yu" last="Liu">Li-Yu Liu</name><affiliation wicri:level="1"><nlm:affiliation>Department of Agronomy, National Taiwan University, Taipei, Taiwan.</nlm:affiliation><country xml:lang="fr">Taïwan</country><wicri:regionArea>Department of Agronomy, National Taiwan University, Taipei</wicri:regionArea></affiliation></author><author><name sortKey="Hernandez, Alvaro G" sort="Hernandez, Alvaro G" uniqKey="Hernandez A" first="Alvaro G" last="Hernandez">Alvaro G. Hernandez</name><affiliation wicri:level="1"><nlm:affiliation>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, Illinois</wicri:regionArea></affiliation></author><author><name sortKey="Wright, Chris L" sort="Wright, Chris L" uniqKey="Wright C" first="Chris L" last="Wright">Chris L. Wright</name><affiliation wicri:level="1"><nlm:affiliation>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, Illinois</wicri:regionArea></affiliation></author><author><name sortKey="Bulone, Vincent" sort="Bulone, Vincent" uniqKey="Bulone V" first="Vincent" last="Bulone">Vincent Bulone</name><affiliation wicri:level="1"><nlm:affiliation>Australian Research Council (ARC) Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, Adelaide, South Australia, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council (ARC) Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, Adelaide, South Australia</wicri:regionArea></affiliation></author><author><name sortKey="Tuskan, Gerald A" sort="Tuskan, Gerald A" uniqKey="Tuskan G" first="Gerald A" last="Tuskan">Gerald A. Tuskan</name><affiliation wicri:level="1"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea></affiliation></author><author><name sortKey="Heath, Katy" sort="Heath, Katy" uniqKey="Heath K" first="Katy" last="Heath">Katy Heath</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois</wicri:regionArea></affiliation></author><author><name sortKey="Zee, Francis" sort="Zee, Francis" uniqKey="Zee F" first="Francis" last="Zee">Francis Zee</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Agriculture-Agricultural Research Service (USDA-ARS), Pacific Basin Agricultural Research Center, Hilo, Hawaii, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Agriculture-Agricultural Research Service (USDA-ARS), Pacific Basin Agricultural Research Center, Hilo, Hawaii</wicri:regionArea></affiliation></author><author><name sortKey="Moore, Paul H" sort="Moore, Paul H" uniqKey="Moore P" first="Paul H" last="Moore">Paul H. Moore</name><affiliation wicri:level="1"><nlm:affiliation>Hawaii Agriculture Research Center, Kunia, Hawaii, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Hawaii Agriculture Research Center, Kunia, Hawaii</wicri:regionArea></affiliation></author><author><name sortKey="Sunkar, Ramanjulu" sort="Sunkar, Ramanjulu" uniqKey="Sunkar R" first="Ramanjulu" last="Sunkar">Ramanjulu Sunkar</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biochemistry and Molecular Biology, Noble Research Center, Oklahoma State University, Stillwater, Oklahoma, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biochemistry and Molecular Biology, Noble Research Center, Oklahoma State University, Stillwater, Oklahoma</wicri:regionArea></affiliation></author><author><name sortKey="Leebens Mack, James H" sort="Leebens Mack, James H" uniqKey="Leebens Mack J" first="James H" last="Leebens-Mack">James H. Leebens-Mack</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, Georgia</wicri:regionArea></affiliation></author><author><name sortKey="Mockler, Todd" sort="Mockler, Todd" uniqKey="Mockler T" first="Todd" last="Mockler">Todd Mockler</name><affiliation wicri:level="1"><nlm:affiliation>Donald Danforth Plant Science Center, St. Louis, Missouri, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Donald Danforth Plant Science Center, St. Louis, Missouri</wicri:regionArea></affiliation></author><author><name sortKey="Bennetzen, Jeffrey L" sort="Bennetzen, Jeffrey L" uniqKey="Bennetzen J" first="Jeffrey L" last="Bennetzen">Jeffrey L. Bennetzen</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, Georgia</wicri:regionArea></affiliation></author><author><name sortKey="Freeling, Michael" sort="Freeling, Michael" uniqKey="Freeling M" first="Michael" last="Freeling">Michael Freeling</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California</wicri:regionArea></affiliation></author><author><name sortKey="Sankoff, David" sort="Sankoff, David" uniqKey="Sankoff D" first="David" last="Sankoff">David Sankoff</name><affiliation wicri:level="1"><nlm:affiliation>Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario</wicri:regionArea></affiliation></author><author><name sortKey="Paterson, Andrew H" sort="Paterson, Andrew H" uniqKey="Paterson A" first="Andrew H" last="Paterson">Andrew H. Paterson</name><affiliation wicri:level="1"><nlm:affiliation>Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia</wicri:regionArea></affiliation></author><author><name sortKey="Zhu, Xinguang" sort="Zhu, Xinguang" uniqKey="Zhu X" first="Xinguang" last="Zhu">Xinguang Zhu</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Gesellschaft Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Gesellschaft Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai</wicri:regionArea></affiliation></author><author><name sortKey="Yang, Xiaohan" sort="Yang, Xiaohan" uniqKey="Yang X" first="Xiaohan" last="Yang">Xiaohan Yang</name><affiliation wicri:level="1"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea></affiliation></author><author><name sortKey="Smith, J Andrew C" sort="Smith, J Andrew C" uniqKey="Smith J" first="J Andrew C" last="Smith">J Andrew C. Smith</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Sciences, University of Oxford, Oxford, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Plant Sciences, University of Oxford, Oxford</wicri:regionArea></affiliation></author><author><name sortKey="Cushman, John C" sort="Cushman, John C" uniqKey="Cushman J" first="John C" last="Cushman">John C. Cushman</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada</wicri:regionArea></affiliation></author><author><name sortKey="Paull, Robert E" sort="Paull, Robert E" uniqKey="Paull R" first="Robert E" last="Paull">Robert E. Paull</name><affiliation wicri:level="1"><nlm:affiliation>Department of Tropical Plant and Soil Sciences, University of Hawaii, Honolulu, Hawaii, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Tropical Plant and Soil Sciences, University of Hawaii, Honolulu, Hawaii</wicri:regionArea></affiliation></author><author><name sortKey="Yu, Qingyi" sort="Yu, Qingyi" uniqKey="Yu Q" first="Qingyi" last="Yu">Qingyi Yu</name><affiliation wicri:level="1"><nlm:affiliation>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:26523774</idno><idno type="pmid">26523774</idno><idno type="doi">10.1038/ng.3435</idno><idno type="wicri:Area/PubMed/Corpus">002610</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">002610</idno><idno type="wicri:Area/PubMed/Curation">002541</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">002541</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The pineapple genome and the evolution of CAM photosynthesis.</title><author><name sortKey="Ming, Ray" sort="Ming, Ray" uniqKey="Ming R" first="Ray" last="Ming">Ray Ming</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Vanburen, Robert" sort="Vanburen, Robert" uniqKey="Vanburen R" first="Robert" last="Vanburen">Robert Vanburen</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Wai, Ching Man" sort="Wai, Ching Man" uniqKey="Wai C" first="Ching Man" last="Wai">Ching Man Wai</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Tang, Haibao" sort="Tang, Haibao" uniqKey="Tang H" first="Haibao" last="Tang">Haibao Tang</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Schatz, Michael C" sort="Schatz, Michael C" uniqKey="Schatz M" first="Michael C" last="Schatz">Michael C. Schatz</name><affiliation wicri:level="1"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea></affiliation></author><author><name sortKey="Bowers, John E" sort="Bowers, John E" uniqKey="Bowers J" first="John E" last="Bowers">John E. Bowers</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, Georgia</wicri:regionArea></affiliation></author><author><name sortKey="Lyons, Eric" sort="Lyons, Eric" uniqKey="Lyons E" first="Eric" last="Lyons">Eric Lyons</name><affiliation wicri:level="1"><nlm:affiliation>iPlant Collaborative/University of Arizona, Tucson, Arizona, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>iPlant Collaborative/University of Arizona, Tucson, Arizona</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Ming Li" sort="Wang, Ming Li" uniqKey="Wang M" first="Ming-Li" last="Wang">Ming-Li Wang</name><affiliation wicri:level="1"><nlm:affiliation>Hawaii Agriculture Research Center, Kunia, Hawaii, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Hawaii Agriculture Research Center, Kunia, Hawaii</wicri:regionArea></affiliation></author><author><name sortKey="Chen, Jung" sort="Chen, Jung" uniqKey="Chen J" first="Jung" last="Chen">Jung Chen</name><affiliation wicri:level="1"><nlm:affiliation>Department of Tropical Plant and Soil Sciences, University of Hawaii, Honolulu, Hawaii, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Tropical Plant and Soil Sciences, University of Hawaii, Honolulu, Hawaii</wicri:regionArea></affiliation></author><author><name sortKey="Biggers, Eric" sort="Biggers, Eric" uniqKey="Biggers E" first="Eric" last="Biggers">Eric Biggers</name><affiliation wicri:level="1"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Jisen" sort="Zhang, Jisen" uniqKey="Zhang J" first="Jisen" last="Zhang">Jisen Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Huang, Lixian" sort="Huang, Lixian" uniqKey="Huang L" first="Lixian" last="Huang">Lixian Huang</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Lingmao" sort="Zhang, Lingmao" uniqKey="Zhang L" first="Lingmao" last="Zhang">Lingmao Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Miao, Wenjing" sort="Miao, Wenjing" uniqKey="Miao W" first="Wenjing" last="Miao">Wenjing Miao</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Jian" sort="Zhang, Jian" uniqKey="Zhang J" first="Jian" last="Zhang">Jian Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Ye, Zhangyao" sort="Ye, Zhangyao" uniqKey="Ye Z" first="Zhangyao" last="Ye">Zhangyao Ye</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Miao, Chenyong" sort="Miao, Chenyong" uniqKey="Miao C" first="Chenyong" last="Miao">Chenyong Miao</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Lin, Zhicong" sort="Lin, Zhicong" uniqKey="Lin Z" first="Zhicong" last="Lin">Zhicong Lin</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Hao" sort="Wang, Hao" uniqKey="Wang H" first="Hao" last="Wang">Hao Wang</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, Georgia</wicri:regionArea></affiliation></author><author><name sortKey="Zhou, Hongye" sort="Zhou, Hongye" uniqKey="Zhou H" first="Hongye" last="Zhou">Hongye Zhou</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, Georgia</wicri:regionArea></affiliation></author><author><name sortKey="Yim, Won C" sort="Yim, Won C" uniqKey="Yim W" first="Won C" last="Yim">Won C. Yim</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada</wicri:regionArea></affiliation></author><author><name sortKey="Priest, Henry D" sort="Priest, Henry D" uniqKey="Priest H" first="Henry D" last="Priest">Henry D. Priest</name><affiliation wicri:level="1"><nlm:affiliation>Donald Danforth Plant Science Center, St. Louis, Missouri, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Donald Danforth Plant Science Center, St. Louis, Missouri</wicri:regionArea></affiliation></author><author><name sortKey="Zheng, Chunfang" sort="Zheng, Chunfang" uniqKey="Zheng C" first="Chunfang" last="Zheng">Chunfang Zheng</name><affiliation wicri:level="1"><nlm:affiliation>Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario</wicri:regionArea></affiliation></author><author><name sortKey="Woodhouse, Margaret" sort="Woodhouse, Margaret" uniqKey="Woodhouse M" first="Margaret" last="Woodhouse">Margaret Woodhouse</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California</wicri:regionArea></affiliation></author><author><name sortKey="Edger, Patrick P" sort="Edger, Patrick P" uniqKey="Edger P" first="Patrick P" last="Edger">Patrick P. Edger</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California</wicri:regionArea></affiliation></author><author><name sortKey="Guyot, Romain" sort="Guyot, Romain" uniqKey="Guyot R" first="Romain" last="Guyot">Romain Guyot</name><affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche pour le Développement, Diversité Adaptation et Développement des Plantes, Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Recherche pour le Développement, Diversité Adaptation et Développement des Plantes, Montpellier</wicri:regionArea></affiliation></author><author><name sortKey="Guo, Hao Bo" sort="Guo, Hao Bo" uniqKey="Guo H" first="Hao-Bo" last="Guo">Hao-Bo Guo</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee</wicri:regionArea></affiliation></author><author><name sortKey="Guo, Hong" sort="Guo, Hong" uniqKey="Guo H" first="Hong" last="Guo">Hong Guo</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee</wicri:regionArea></affiliation></author><author><name sortKey="Zheng, Guangyong" sort="Zheng, Guangyong" uniqKey="Zheng G" first="Guangyong" last="Zheng">Guangyong Zheng</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Gesellschaft Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Gesellschaft Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai</wicri:regionArea></affiliation></author><author><name sortKey="Singh, Ratnesh" sort="Singh, Ratnesh" uniqKey="Singh R" first="Ratnesh" last="Singh">Ratnesh Singh</name><affiliation wicri:level="1"><nlm:affiliation>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas</wicri:regionArea></affiliation></author><author><name sortKey="Sharma, Anupma" sort="Sharma, Anupma" uniqKey="Sharma A" first="Anupma" last="Sharma">Anupma Sharma</name><affiliation wicri:level="1"><nlm:affiliation>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas</wicri:regionArea></affiliation></author><author><name sortKey="Min, Xiangjia" sort="Min, Xiangjia" uniqKey="Min X" first="Xiangjia" last="Min">Xiangjia Min</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biological Sciences, Youngstown State University, Youngstown, Ohio, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, Youngstown State University, Youngstown, Ohio</wicri:regionArea></affiliation></author><author><name sortKey="Zheng, Yun" sort="Zheng, Yun" uniqKey="Zheng Y" first="Yun" last="Zheng">Yun Zheng</name><affiliation wicri:level="1"><nlm:affiliation>Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming</wicri:regionArea></affiliation></author><author><name sortKey="Lee, Hayan" sort="Lee, Hayan" uniqKey="Lee H" first="Hayan" last="Lee">Hayan Lee</name><affiliation wicri:level="1"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea></affiliation></author><author><name sortKey="Gurtowski, James" sort="Gurtowski, James" uniqKey="Gurtowski J" first="James" last="Gurtowski">James Gurtowski</name><affiliation wicri:level="1"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea></affiliation></author><author><name sortKey="Sedlazeck, Fritz J" sort="Sedlazeck, Fritz J" uniqKey="Sedlazeck F" first="Fritz J" last="Sedlazeck">Fritz J. Sedlazeck</name><affiliation wicri:level="1"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea></affiliation></author><author><name sortKey="Harkess, Alex" sort="Harkess, Alex" uniqKey="Harkess A" first="Alex" last="Harkess">Alex Harkess</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, Georgia</wicri:regionArea></affiliation></author><author><name sortKey="Mckain, Michael R" sort="Mckain, Michael R" uniqKey="Mckain M" first="Michael R" last="Mckain">Michael R. Mckain</name><affiliation wicri:level="1"><nlm:affiliation>Donald Danforth Plant Science Center, St. Louis, Missouri, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Donald Danforth Plant Science Center, St. Louis, Missouri</wicri:regionArea></affiliation></author><author><name sortKey="Liao, Zhenyang" sort="Liao, Zhenyang" uniqKey="Liao Z" first="Zhenyang" last="Liao">Zhenyang Liao</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Fang, Jingping" sort="Fang, Jingping" uniqKey="Fang J" first="Jingping" last="Fang">Jingping Fang</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Juan" sort="Liu, Juan" uniqKey="Liu J" first="Juan" last="Liu">Juan Liu</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Xiaodan" sort="Zhang, Xiaodan" uniqKey="Zhang X" first="Xiaodan" last="Zhang">Xiaodan Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Qing" sort="Zhang, Qing" uniqKey="Zhang Q" first="Qing" last="Zhang">Qing Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Hu, Weichang" sort="Hu, Weichang" uniqKey="Hu W" first="Weichang" last="Hu">Weichang Hu</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Qin, Yuan" sort="Qin, Yuan" uniqKey="Qin Y" first="Yuan" last="Qin">Yuan Qin</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Kai" sort="Wang, Kai" uniqKey="Wang K" first="Kai" last="Wang">Kai Wang</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Chen, Li Yu" sort="Chen, Li Yu" uniqKey="Chen L" first="Li-Yu" last="Chen">Li-Yu Chen</name><affiliation wicri:level="1"><nlm:affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea></affiliation></author><author><name sortKey="Shirley, Neil" sort="Shirley, Neil" uniqKey="Shirley N" first="Neil" last="Shirley">Neil Shirley</name><affiliation wicri:level="1"><nlm:affiliation>Australian Research Council (ARC) Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, Adelaide, South Australia, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council (ARC) Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, Adelaide, South Australia</wicri:regionArea></affiliation></author><author><name sortKey="Lin, Yann Rong" sort="Lin, Yann Rong" uniqKey="Lin Y" first="Yann-Rong" last="Lin">Yann-Rong Lin</name><affiliation wicri:level="1"><nlm:affiliation>Department of Agronomy, National Taiwan University, Taipei, Taiwan.</nlm:affiliation><country xml:lang="fr">Taïwan</country><wicri:regionArea>Department of Agronomy, National Taiwan University, Taipei</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Li Yu" sort="Liu, Li Yu" uniqKey="Liu L" first="Li-Yu" last="Liu">Li-Yu Liu</name><affiliation wicri:level="1"><nlm:affiliation>Department of Agronomy, National Taiwan University, Taipei, Taiwan.</nlm:affiliation><country xml:lang="fr">Taïwan</country><wicri:regionArea>Department of Agronomy, National Taiwan University, Taipei</wicri:regionArea></affiliation></author><author><name sortKey="Hernandez, Alvaro G" sort="Hernandez, Alvaro G" uniqKey="Hernandez A" first="Alvaro G" last="Hernandez">Alvaro G. Hernandez</name><affiliation wicri:level="1"><nlm:affiliation>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, Illinois</wicri:regionArea></affiliation></author><author><name sortKey="Wright, Chris L" sort="Wright, Chris L" uniqKey="Wright C" first="Chris L" last="Wright">Chris L. Wright</name><affiliation wicri:level="1"><nlm:affiliation>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, Illinois</wicri:regionArea></affiliation></author><author><name sortKey="Bulone, Vincent" sort="Bulone, Vincent" uniqKey="Bulone V" first="Vincent" last="Bulone">Vincent Bulone</name><affiliation wicri:level="1"><nlm:affiliation>Australian Research Council (ARC) Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, Adelaide, South Australia, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council (ARC) Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, Adelaide, South Australia</wicri:regionArea></affiliation></author><author><name sortKey="Tuskan, Gerald A" sort="Tuskan, Gerald A" uniqKey="Tuskan G" first="Gerald A" last="Tuskan">Gerald A. Tuskan</name><affiliation wicri:level="1"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea></affiliation></author><author><name sortKey="Heath, Katy" sort="Heath, Katy" uniqKey="Heath K" first="Katy" last="Heath">Katy Heath</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois</wicri:regionArea></affiliation></author><author><name sortKey="Zee, Francis" sort="Zee, Francis" uniqKey="Zee F" first="Francis" last="Zee">Francis Zee</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Agriculture-Agricultural Research Service (USDA-ARS), Pacific Basin Agricultural Research Center, Hilo, Hawaii, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Agriculture-Agricultural Research Service (USDA-ARS), Pacific Basin Agricultural Research Center, Hilo, Hawaii</wicri:regionArea></affiliation></author><author><name sortKey="Moore, Paul H" sort="Moore, Paul H" uniqKey="Moore P" first="Paul H" last="Moore">Paul H. Moore</name><affiliation wicri:level="1"><nlm:affiliation>Hawaii Agriculture Research Center, Kunia, Hawaii, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Hawaii Agriculture Research Center, Kunia, Hawaii</wicri:regionArea></affiliation></author><author><name sortKey="Sunkar, Ramanjulu" sort="Sunkar, Ramanjulu" uniqKey="Sunkar R" first="Ramanjulu" last="Sunkar">Ramanjulu Sunkar</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biochemistry and Molecular Biology, Noble Research Center, Oklahoma State University, Stillwater, Oklahoma, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biochemistry and Molecular Biology, Noble Research Center, Oklahoma State University, Stillwater, Oklahoma</wicri:regionArea></affiliation></author><author><name sortKey="Leebens Mack, James H" sort="Leebens Mack, James H" uniqKey="Leebens Mack J" first="James H" last="Leebens-Mack">James H. Leebens-Mack</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, Georgia</wicri:regionArea></affiliation></author><author><name sortKey="Mockler, Todd" sort="Mockler, Todd" uniqKey="Mockler T" first="Todd" last="Mockler">Todd Mockler</name><affiliation wicri:level="1"><nlm:affiliation>Donald Danforth Plant Science Center, St. Louis, Missouri, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Donald Danforth Plant Science Center, St. Louis, Missouri</wicri:regionArea></affiliation></author><author><name sortKey="Bennetzen, Jeffrey L" sort="Bennetzen, Jeffrey L" uniqKey="Bennetzen J" first="Jeffrey L" last="Bennetzen">Jeffrey L. Bennetzen</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, University of Georgia, Athens, Georgia</wicri:regionArea></affiliation></author><author><name sortKey="Freeling, Michael" sort="Freeling, Michael" uniqKey="Freeling M" first="Michael" last="Freeling">Michael Freeling</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California</wicri:regionArea></affiliation></author><author><name sortKey="Sankoff, David" sort="Sankoff, David" uniqKey="Sankoff D" first="David" last="Sankoff">David Sankoff</name><affiliation wicri:level="1"><nlm:affiliation>Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario</wicri:regionArea></affiliation></author><author><name sortKey="Paterson, Andrew H" sort="Paterson, Andrew H" uniqKey="Paterson A" first="Andrew H" last="Paterson">Andrew H. Paterson</name><affiliation wicri:level="1"><nlm:affiliation>Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia</wicri:regionArea></affiliation></author><author><name sortKey="Zhu, Xinguang" sort="Zhu, Xinguang" uniqKey="Zhu X" first="Xinguang" last="Zhu">Xinguang Zhu</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Gesellschaft Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Gesellschaft Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai</wicri:regionArea></affiliation></author><author><name sortKey="Yang, Xiaohan" sort="Yang, Xiaohan" uniqKey="Yang X" first="Xiaohan" last="Yang">Xiaohan Yang</name><affiliation wicri:level="1"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea></affiliation></author><author><name sortKey="Smith, J Andrew C" sort="Smith, J Andrew C" uniqKey="Smith J" first="J Andrew C" last="Smith">J Andrew C. Smith</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Sciences, University of Oxford, Oxford, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Plant Sciences, University of Oxford, Oxford</wicri:regionArea></affiliation></author><author><name sortKey="Cushman, John C" sort="Cushman, John C" uniqKey="Cushman J" first="John C" last="Cushman">John C. Cushman</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada</wicri:regionArea></affiliation></author><author><name sortKey="Paull, Robert E" sort="Paull, Robert E" uniqKey="Paull R" first="Robert E" last="Paull">Robert E. Paull</name><affiliation wicri:level="1"><nlm:affiliation>Department of Tropical Plant and Soil Sciences, University of Hawaii, Honolulu, Hawaii, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Tropical Plant and Soil Sciences, University of Hawaii, Honolulu, Hawaii</wicri:regionArea></affiliation></author><author><name sortKey="Yu, Qingyi" sort="Yu, Qingyi" uniqKey="Yu Q" first="Qingyi" last="Yu">Qingyi Yu</name><affiliation wicri:level="1"><nlm:affiliation>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas</wicri:regionArea></affiliation></author></analytic><series><title level="j">Nature genetics</title><idno type="eISSN">1546-1718</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ananas (genetics)</term><term>Chromosome Mapping</term><term>Epigenomics</term><term>Evolution, Molecular</term><term>Gene Expression Regulation, Plant</term><term>Gene Regulatory Networks</term><term>Genetic Markers</term><term>Genome, Plant</term><term>Genomics (methods)</term><term>High-Throughput Nucleotide Sequencing (methods)</term><term>Photosynthesis (physiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Ananas (génétique)</term><term>Cartographie chromosomique</term><term>Génome végétal</term><term>Génomique ()</term><term>Marqueurs génétiques</term><term>Photosynthèse (physiologie)</term><term>Régulation de l'expression des gènes végétaux</term><term>Réseaux de régulation génique</term><term>Séquençage nucléotidique à haut débit ()</term><term>Épigénomique</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Genetic Markers</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Ananas</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Ananas</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Genomics</term><term>High-Throughput Nucleotide Sequencing</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Photosynthèse</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Photosynthesis</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term><term>Epigenomics</term><term>Evolution, Molecular</term><term>Gene Expression Regulation, Plant</term><term>Gene Regulatory Networks</term><term>Genome, Plant</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term><term>Génome végétal</term><term>Génomique</term><term>Marqueurs génétiques</term><term>Régulation de l'expression des gènes végétaux</term><term>Réseaux de régulation génique</term><term>Séquençage nucléotidique à haut débit</term><term>Épigénomique</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Pineapple (Ananas comosus (L.) Merr.) is the most economically valuable crop possessing crassulacean acid metabolism (CAM), a photosynthetic carbon assimilation pathway with high water-use efficiency, and the second most important tropical fruit. We sequenced the genomes of pineapple varieties F153 and MD2 and a wild pineapple relative, Ananas bracteatus accession CB5. The pineapple genome has one fewer ancient whole-genome duplication event than sequenced grass genomes and a conserved karyotype with seven chromosomes from before the ρ duplication event. The pineapple lineage has transitioned from C3 photosynthesis to CAM, with CAM-related genes exhibiting a diel expression pattern in photosynthetic tissues. CAM pathway genes were enriched with cis-regulatory elements associated with the regulation of circadian clock genes, providing the first cis-regulatory link between CAM and circadian clock regulation. Pineapple CAM photosynthesis evolved by the reconfiguration of pathways in C3 plants, through the regulatory neofunctionalization of preexisting genes and not through the acquisition of neofunctionalized genes via whole-genome or tandem gene duplication.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26523774</PMID><DateCreated><Year>2015</Year><Month>12</Month><Day>01</Day></DateCreated><DateCompleted><Year>2016</Year><Month>06</Month><Day>21</Day></DateCompleted><DateRevised><Year>2017</Year><Month>02</Month><Day>20</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1546-1718</ISSN><JournalIssue CitedMedium="Internet"><Volume>47</Volume><Issue>12</Issue><PubDate><Year>2015</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Nature genetics</Title><ISOAbbreviation>Nat. Genet.</ISOAbbreviation></Journal><ArticleTitle>The pineapple genome and the evolution of CAM photosynthesis.</ArticleTitle><Pagination><MedlinePgn>1435-42</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/ng.3435</ELocationID><Abstract><AbstractText>Pineapple (Ananas comosus (L.) Merr.) is the most economically valuable crop possessing crassulacean acid metabolism (CAM), a photosynthetic carbon assimilation pathway with high water-use efficiency, and the second most important tropical fruit. We sequenced the genomes of pineapple varieties F153 and MD2 and a wild pineapple relative, Ananas bracteatus accession CB5. The pineapple genome has one fewer ancient whole-genome duplication event than sequenced grass genomes and a conserved karyotype with seven chromosomes from before the ρ duplication event. The pineapple lineage has transitioned from C3 photosynthesis to CAM, with CAM-related genes exhibiting a diel expression pattern in photosynthetic tissues. CAM pathway genes were enriched with cis-regulatory elements associated with the regulation of circadian clock genes, providing the first cis-regulatory link between CAM and circadian clock regulation. Pineapple CAM photosynthesis evolved by the reconfiguration of pathways in C3 plants, through the regulatory neofunctionalization of preexisting genes and not through the acquisition of neofunctionalized genes via whole-genome or tandem gene duplication.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ming</LastName><ForeName>Ray</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>VanBuren</LastName><ForeName>Robert</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Donald Danforth Plant Science Center, St. Louis, Missouri, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wai</LastName><ForeName>Ching Man</ForeName><Initials>CM</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tang</LastName><ForeName>Haibao</ForeName><Initials>H</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-3460-8570</Identifier><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>iPlant Collaborative/University of Arizona, Tucson, Arizona, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schatz</LastName><ForeName>Michael C</ForeName><Initials>MC</Initials><AffiliationInfo><Affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bowers</LastName><ForeName>John E</ForeName><Initials>JE</Initials><AffiliationInfo><Affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lyons</LastName><ForeName>Eric</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>iPlant Collaborative/University of Arizona, Tucson, Arizona, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Ming-Li</ForeName><Initials>ML</Initials><AffiliationInfo><Affiliation>Hawaii Agriculture Research Center, Kunia, Hawaii, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Jung</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Tropical Plant and Soil Sciences, University of Hawaii, Honolulu, Hawaii, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Biggers</LastName><ForeName>Eric</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Jisen</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Lixian</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Lingmao</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Miao</LastName><ForeName>Wenjing</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Jian</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ye</LastName><ForeName>Zhangyao</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Miao</LastName><ForeName>Chenyong</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lin</LastName><ForeName>Zhicong</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Hao</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhou</LastName><ForeName>Hongye</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yim</LastName><ForeName>Won C</ForeName><Initials>WC</Initials><AffiliationInfo><Affiliation>Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Priest</LastName><ForeName>Henry D</ForeName><Initials>HD</Initials><AffiliationInfo><Affiliation>Donald Danforth Plant Science Center, St. Louis, Missouri, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zheng</LastName><ForeName>Chunfang</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Woodhouse</LastName><ForeName>Margaret</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Edger</LastName><ForeName>Patrick P</ForeName><Initials>PP</Initials><AffiliationInfo><Affiliation>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guyot</LastName><ForeName>Romain</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Institut de Recherche pour le Développement, Diversité Adaptation et Développement des Plantes, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Hao-Bo</ForeName><Initials>HB</Initials><AffiliationInfo><Affiliation>Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Hong</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zheng</LastName><ForeName>Guangyong</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Gesellschaft Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Singh</LastName><ForeName>Ratnesh</ForeName><Initials>R</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-5647-3390</Identifier><AffiliationInfo><Affiliation>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sharma</LastName><ForeName>Anupma</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Min</LastName><ForeName>Xiangjia</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, Youngstown State University, Youngstown, Ohio, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zheng</LastName><ForeName>Yun</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lee</LastName><ForeName>Hayan</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gurtowski</LastName><ForeName>James</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sedlazeck</LastName><ForeName>Fritz J</ForeName><Initials>FJ</Initials><AffiliationInfo><Affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Harkess</LastName><ForeName>Alex</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>McKain</LastName><ForeName>Michael R</ForeName><Initials>MR</Initials><AffiliationInfo><Affiliation>Donald Danforth Plant Science Center, St. Louis, Missouri, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liao</LastName><ForeName>Zhenyang</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fang</LastName><ForeName>Jingping</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Juan</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Xiaodan</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Qing</ForeName><Initials>Q</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hu</LastName><ForeName>Weichang</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Qin</LastName><ForeName>Yuan</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Kai</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Li-Yu</ForeName><Initials>LY</Initials><AffiliationInfo><Affiliation>Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign-School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Fujian-Taiwan Joint Center for Ecological Control of Crop Pests, Fujian Agriculture and Forestry University, Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shirley</LastName><ForeName>Neil</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Australian Research Council (ARC) Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, Adelaide, South Australia, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lin</LastName><ForeName>Yann-Rong</ForeName><Initials>YR</Initials><AffiliationInfo><Affiliation>Department of Agronomy, National Taiwan University, Taipei, Taiwan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Li-Yu</ForeName><Initials>LY</Initials><AffiliationInfo><Affiliation>Department of Agronomy, National Taiwan University, Taipei, Taiwan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hernandez</LastName><ForeName>Alvaro G</ForeName><Initials>AG</Initials><AffiliationInfo><Affiliation>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wright</LastName><ForeName>Chris L</ForeName><Initials>CL</Initials><AffiliationInfo><Affiliation>W.M. Keck Center, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bulone</LastName><ForeName>Vincent</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Australian Research Council (ARC) Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus Urrbrae, Adelaide, South Australia, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tuskan</LastName><ForeName>Gerald A</ForeName><Initials>GA</Initials><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Heath</LastName><ForeName>Katy</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zee</LastName><ForeName>Francis</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>US Department of Agriculture-Agricultural Research Service (USDA-ARS), Pacific Basin Agricultural Research Center, Hilo, Hawaii, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Moore</LastName><ForeName>Paul H</ForeName><Initials>PH</Initials><AffiliationInfo><Affiliation>Hawaii Agriculture Research Center, Kunia, Hawaii, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sunkar</LastName><ForeName>Ramanjulu</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Department of Biochemistry and Molecular Biology, Noble Research Center, Oklahoma State University, Stillwater, Oklahoma, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Leebens-Mack</LastName><ForeName>James H</ForeName><Initials>JH</Initials><AffiliationInfo><Affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mockler</LastName><ForeName>Todd</ForeName><Initials>T</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-0462-5775</Identifier><AffiliationInfo><Affiliation>Donald Danforth Plant Science Center, St. Louis, Missouri, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bennetzen</LastName><ForeName>Jeffrey L</ForeName><Initials>JL</Initials><AffiliationInfo><Affiliation>Department of Plant Biology, University of Georgia, Athens, Georgia, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Freeling</LastName><ForeName>Michael</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sankoff</LastName><ForeName>David</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Paterson</LastName><ForeName>Andrew H</ForeName><Initials>AH</Initials><AffiliationInfo><Affiliation>Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Xinguang</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Gesellschaft Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Xiaohan</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Smith</LastName><ForeName>J Andrew C</ForeName><Initials>JA</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-9188-0258</Identifier><AffiliationInfo><Affiliation>Department of Plant Sciences, University of Oxford, Oxford, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cushman</LastName><ForeName>John C</ForeName><Initials>JC</Initials><AffiliationInfo><Affiliation>Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Paull</LastName><ForeName>Robert E</ForeName><Initials>RE</Initials><AffiliationInfo><Affiliation>Department of Tropical Plant and Soil Sciences, University of Hawaii, Honolulu, Hawaii, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yu</LastName><ForeName>Qingyi</ForeName><Initials>Q</Initials><AffiliationInfo><Affiliation>Texas A&M AgriLife Research, Department of Plant Pathology and Microbiology, Texas A&M University System, Dallas, Texas, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>R01 HG006677</GrantID><Acronym>HG</Acronym><Agency>NHGRI NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>R01-HG006677</GrantID><Acronym>HG</Acronym><Agency>NHGRI NIH HHS</Agency><Country>United States</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, 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