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Applying the ARRIVE Guidelines to an In Vivo Database.

Identifieur interne : 000496 ( PubMed/Curation ); précédent : 000495; suivant : 000497

Applying the ARRIVE Guidelines to an In Vivo Database.

Auteurs : Natasha A. Karp [Royaume-Uni] ; Terry F. Meehan [Royaume-Uni] ; Hugh Morgan [Royaume-Uni] ; Jeremy C. Mason [Royaume-Uni] ; Andrew Blake [Royaume-Uni] ; Natalja Kurbatova [Royaume-Uni] ; Damian Smedley [Royaume-Uni] ; Julius Jacobsen [Royaume-Uni] ; Richard F. Mott [Royaume-Uni] ; Vivek Iyer [Royaume-Uni] ; Peter Matthews [Royaume-Uni] ; David G. Melvin [Royaume-Uni] ; Sara Wells [Royaume-Uni] ; Ann M. Flenniken [Canada] ; Hiroshi Masuya [Japon] ; Shigeharu Wakana [Japon] ; Jacqueline K. White [Royaume-Uni] ; K C Kent Lloyd [États-Unis] ; Corey L. Reynolds [États-Unis] ; Richard Paylor [États-Unis] ; David B. West [États-Unis] ; Karen L. Svenson [États-Unis] ; Elissa J. Chesler [États-Unis] ; Martin Hrab De Angelis [Allemagne] ; Glauco P. Tocchini-Valentini [Italie] ; Tania Sorg [France] ; Yann Herault [France] ; Helen Parkinson [Royaume-Uni] ; Ann-Marie Mallon [Royaume-Uni] ; Steve D M. Brown [Royaume-Uni]

Source :

RBID : pubmed:25992600

English descriptors

Abstract

The Animal Research: Reporting of In Vivo Experiments (ARRIVE) guidelines were developed to address the lack of reproducibility in biomedical animal studies and improve the communication of research findings. While intended to guide the preparation of peer-reviewed manuscripts, the principles of transparent reporting are also fundamental for in vivo databases. Here, we describe the benefits and challenges of applying the guidelines for the International Mouse Phenotyping Consortium (IMPC), whose goal is to produce and phenotype 20,000 knockout mouse strains in a reproducible manner across ten research centres. In addition to ensuring the transparency and reproducibility of the IMPC, the solutions to the challenges of applying the ARRIVE guidelines in the context of IMPC will provide a resource to help guide similar initiatives in the future.

DOI: 10.1371/journal.pbio.1002151
PubMed: 25992600

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pubmed:25992600

Le document en format XML

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</affiliation>
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</affiliation>
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<name sortKey="Parkinson, Helen" sort="Parkinson, Helen" uniqKey="Parkinson H" first="Helen" last="Parkinson">Helen Parkinson</name>
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<nlm:affiliation>Samples, Phenotypes and Ontologies, European Molecular Biology Laboratory-European Bioinformatics Institute, Cambridge, United Kingdom.</nlm:affiliation>
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</affiliation>
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<name sortKey="Mallon, Ann Marie" sort="Mallon, Ann Marie" uniqKey="Mallon A" first="Ann-Marie" last="Mallon">Ann-Marie Mallon</name>
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<name sortKey="Brown, Steve D M" sort="Brown, Steve D M" uniqKey="Brown S" first="Steve D M" last="Brown">Steve D M. Brown</name>
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<title level="j">PLoS biology</title>
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<term>Phenotype</term>
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<div type="abstract" xml:lang="en">The Animal Research: Reporting of In Vivo Experiments (ARRIVE) guidelines were developed to address the lack of reproducibility in biomedical animal studies and improve the communication of research findings. While intended to guide the preparation of peer-reviewed manuscripts, the principles of transparent reporting are also fundamental for in vivo databases. Here, we describe the benefits and challenges of applying the guidelines for the International Mouse Phenotyping Consortium (IMPC), whose goal is to produce and phenotype 20,000 knockout mouse strains in a reproducible manner across ten research centres. In addition to ensuring the transparency and reproducibility of the IMPC, the solutions to the challenges of applying the ARRIVE guidelines in the context of IMPC will provide a resource to help guide similar initiatives in the future.</div>
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<Day>21</Day>
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<Day>22</Day>
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<AbstractText>The Animal Research: Reporting of In Vivo Experiments (ARRIVE) guidelines were developed to address the lack of reproducibility in biomedical animal studies and improve the communication of research findings. While intended to guide the preparation of peer-reviewed manuscripts, the principles of transparent reporting are also fundamental for in vivo databases. Here, we describe the benefits and challenges of applying the guidelines for the International Mouse Phenotyping Consortium (IMPC), whose goal is to produce and phenotype 20,000 knockout mouse strains in a reproducible manner across ten research centres. In addition to ensuring the transparency and reproducibility of the IMPC, the solutions to the challenges of applying the ARRIVE guidelines in the context of IMPC will provide a resource to help guide similar initiatives in the future.</AbstractText>
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<LastName>Karp</LastName>
<ForeName>Natasha A</ForeName>
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<Affiliation>Mouse Informatics Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</Affiliation>
</AffiliationInfo>
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<LastName>Meehan</LastName>
<ForeName>Terry F</ForeName>
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</AffiliationInfo>
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</AffiliationInfo>
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<LastName>Smedley</LastName>
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</AffiliationInfo>
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<ForeName>Martin Hrabě</ForeName>
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<Affiliation>German Mouse Clinic-Institute of Experimental Genetics, Helmholtz Zentrum München, Neuherberg, Germany; Experimental Genetics-Center of Life and Food, Technische Universität München, Freising-Weihenstephan, Germany.</Affiliation>
</AffiliationInfo>
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<LastName>Tocchini-Valentini</LastName>
<ForeName>Glauco P</ForeName>
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<Affiliation>Monterotondo Mouse Clinic, CNR Institute of Cell Biology and Neurobiology, Monterotondo, Scalo, Italy.</Affiliation>
</AffiliationInfo>
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<LastName>Sorg</LastName>
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<Affiliation>PHENOMIN, Centre National de la Recherche Scientifique, Illkirch, France; Institut Clinique de la Souris, Université de Strasbourg, Illkirch, France; Institut de Génétique et de Biologie Moléculaire et Cellulaire, Institut National de la Santé et de la Recherche Médicale U964, Illkirch, France.</Affiliation>
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