Applying the ARRIVE Guidelines to an In Vivo Database.
Identifieur interne : 000496 ( PubMed/Corpus ); précédent : 000495; suivant : 000497Applying the ARRIVE Guidelines to an In Vivo Database.
Auteurs : Natasha A. Karp ; Terry F. Meehan ; Hugh Morgan ; Jeremy C. Mason ; Andrew Blake ; Natalja Kurbatova ; Damian Smedley ; Julius Jacobsen ; Richard F. Mott ; Vivek Iyer ; Peter Matthews ; David G. Melvin ; Sara Wells ; Ann M. Flenniken ; Hiroshi Masuya ; Shigeharu Wakana ; Jacqueline K. White ; K C Kent Lloyd ; Corey L. Reynolds ; Richard Paylor ; David B. West ; Karen L. Svenson ; Elissa J. Chesler ; Martin Hrab De Angelis ; Glauco P. Tocchini-Valentini ; Tania Sorg ; Yann Herault ; Helen Parkinson ; Ann-Marie Mallon ; Steve D M. BrownSource :
- PLoS biology [ 1545-7885 ] ; 2015.
English descriptors
- KwdEn :
- MESH :
- standards : Animal Experimentation.
- Animals, Databases as Topic, Guidelines as Topic, Mice, Phenotype.
Abstract
The Animal Research: Reporting of In Vivo Experiments (ARRIVE) guidelines were developed to address the lack of reproducibility in biomedical animal studies and improve the communication of research findings. While intended to guide the preparation of peer-reviewed manuscripts, the principles of transparent reporting are also fundamental for in vivo databases. Here, we describe the benefits and challenges of applying the guidelines for the International Mouse Phenotyping Consortium (IMPC), whose goal is to produce and phenotype 20,000 knockout mouse strains in a reproducible manner across ten research centres. In addition to ensuring the transparency and reproducibility of the IMPC, the solutions to the challenges of applying the ARRIVE guidelines in the context of IMPC will provide a resource to help guide similar initiatives in the future.
DOI: 10.1371/journal.pbio.1002151
PubMed: 25992600
Links to Exploration step
pubmed:25992600Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Applying the ARRIVE Guidelines to an In Vivo Database.</title><author><name sortKey="Karp, Natasha A" sort="Karp, Natasha A" uniqKey="Karp N" first="Natasha A" last="Karp">Natasha A. Karp</name><affiliation><nlm:affiliation>Mouse Informatics Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Meehan, Terry F" sort="Meehan, Terry F" uniqKey="Meehan T" first="Terry F" last="Meehan">Terry F. Meehan</name><affiliation><nlm:affiliation>Samples, Phenotypes and Ontologies, European Molecular Biology Laboratory-European Bioinformatics Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Morgan, Hugh" sort="Morgan, Hugh" uniqKey="Morgan H" first="Hugh" last="Morgan">Hugh Morgan</name><affiliation><nlm:affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Mason, Jeremy C" sort="Mason, Jeremy C" uniqKey="Mason J" first="Jeremy C" last="Mason">Jeremy C. Mason</name><affiliation><nlm:affiliation>Samples, Phenotypes and Ontologies, European Molecular Biology Laboratory-European Bioinformatics Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Blake, Andrew" sort="Blake, Andrew" uniqKey="Blake A" first="Andrew" last="Blake">Andrew Blake</name><affiliation><nlm:affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Kurbatova, Natalja" sort="Kurbatova, Natalja" uniqKey="Kurbatova N" first="Natalja" last="Kurbatova">Natalja Kurbatova</name><affiliation><nlm:affiliation>Samples, Phenotypes and Ontologies, European Molecular Biology Laboratory-European Bioinformatics Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Smedley, Damian" sort="Smedley, Damian" uniqKey="Smedley D" first="Damian" last="Smedley">Damian Smedley</name><affiliation><nlm:affiliation>Mouse Informatics Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Jacobsen, Julius" sort="Jacobsen, Julius" uniqKey="Jacobsen J" first="Julius" last="Jacobsen">Julius Jacobsen</name><affiliation><nlm:affiliation>Mouse Informatics Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Mott, Richard F" sort="Mott, Richard F" uniqKey="Mott R" first="Richard F" last="Mott">Richard F. Mott</name><affiliation><nlm:affiliation>The Wellcome Trust Centre for Human Genetics, Oxford University, Oxford, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Iyer, Vivek" sort="Iyer, Vivek" uniqKey="Iyer V" first="Vivek" last="Iyer">Vivek Iyer</name><affiliation><nlm:affiliation>Cellular Genetics, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Matthews, Peter" sort="Matthews, Peter" uniqKey="Matthews P" first="Peter" last="Matthews">Peter Matthews</name><affiliation><nlm:affiliation>Cellular Genetics, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Melvin, David G" sort="Melvin, David G" uniqKey="Melvin D" first="David G" last="Melvin">David G. Melvin</name><affiliation><nlm:affiliation>Mouse Informatics Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Wells, Sara" sort="Wells, Sara" uniqKey="Wells S" first="Sara" last="Wells">Sara Wells</name><affiliation><nlm:affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Flenniken, Ann M" sort="Flenniken, Ann M" uniqKey="Flenniken A" first="Ann M" last="Flenniken">Ann M. Flenniken</name><affiliation><nlm:affiliation>Toronto Centre for Phenogenomics, Mount Sinai Hospital, Toronto, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Masuya, Hiroshi" sort="Masuya, Hiroshi" uniqKey="Masuya H" first="Hiroshi" last="Masuya">Hiroshi Masuya</name><affiliation><nlm:affiliation>BioResource Center, RIKEN, Tsukuba, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Wakana, Shigeharu" sort="Wakana, Shigeharu" uniqKey="Wakana S" first="Shigeharu" last="Wakana">Shigeharu Wakana</name><affiliation><nlm:affiliation>BioResource Center, RIKEN, Tsukuba, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="White, Jacqueline K" sort="White, Jacqueline K" uniqKey="White J" first="Jacqueline K" last="White">Jacqueline K. White</name><affiliation><nlm:affiliation>Mouse Genetics Project, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Lloyd, K C Kent" sort="Lloyd, K C Kent" uniqKey="Lloyd K" first="K C Kent" last="Lloyd">K C Kent Lloyd</name><affiliation><nlm:affiliation>Mouse Biology Program, University of California Davis, Davis, California, United States of America.</nlm:affiliation></affiliation></author><author><name sortKey="Reynolds, Corey L" sort="Reynolds, Corey L" uniqKey="Reynolds C" first="Corey L" last="Reynolds">Corey L. Reynolds</name><affiliation><nlm:affiliation>Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, Texas, United States of America.</nlm:affiliation></affiliation></author><author><name sortKey="Paylor, Richard" sort="Paylor, Richard" uniqKey="Paylor R" first="Richard" last="Paylor">Richard Paylor</name><affiliation><nlm:affiliation>Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America.</nlm:affiliation></affiliation></author><author><name sortKey="West, David B" sort="West, David B" uniqKey="West D" first="David B" last="West">David B. West</name><affiliation><nlm:affiliation>Genetics, Children's Hospital Oakland Research Institute, Oakland, California, United States of America.</nlm:affiliation></affiliation></author><author><name sortKey="Svenson, Karen L" sort="Svenson, Karen L" uniqKey="Svenson K" first="Karen L" last="Svenson">Karen L. Svenson</name><affiliation><nlm:affiliation>Genetics, The Jackson Laboratory, Bar Habour, Maine, United States of America.</nlm:affiliation></affiliation></author><author><name sortKey="Chesler, Elissa J" sort="Chesler, Elissa J" uniqKey="Chesler E" first="Elissa J" last="Chesler">Elissa J. Chesler</name><affiliation><nlm:affiliation>Genetics, The Jackson Laboratory, Bar Habour, Maine, United States of America.</nlm:affiliation></affiliation></author><author><name sortKey="De Angelis, Martin Hrab" sort="De Angelis, Martin Hrab" uniqKey="De Angelis M" first="Martin Hrab" last="De Angelis">Martin Hrab De Angelis</name><affiliation><nlm:affiliation>German Mouse Clinic-Institute of Experimental Genetics, Helmholtz Zentrum München, Neuherberg, Germany; Experimental Genetics-Center of Life and Food, Technische Universität München, Freising-Weihenstephan, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Tocchini Valentini, Glauco P" sort="Tocchini Valentini, Glauco P" uniqKey="Tocchini Valentini G" first="Glauco P" last="Tocchini-Valentini">Glauco P. Tocchini-Valentini</name><affiliation><nlm:affiliation>Monterotondo Mouse Clinic, CNR Institute of Cell Biology and Neurobiology, Monterotondo, Scalo, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Sorg, Tania" sort="Sorg, Tania" uniqKey="Sorg T" first="Tania" last="Sorg">Tania Sorg</name><affiliation><nlm:affiliation>PHENOMIN, Centre National de la Recherche Scientifique, Illkirch, France; Institut Clinique de la Souris, Université de Strasbourg, Illkirch, France; Institut de Génétique et de Biologie Moléculaire et Cellulaire, Institut National de la Santé et de la Recherche Médicale U964, Illkirch, France.</nlm:affiliation></affiliation></author><author><name sortKey="Herault, Yann" sort="Herault, Yann" uniqKey="Herault Y" first="Yann" last="Herault">Yann Herault</name><affiliation><nlm:affiliation>PHENOMIN, Centre National de la Recherche Scientifique, Illkirch, France; Institut Clinique de la Souris, Université de Strasbourg, Illkirch, France; Institut de Génétique et de Biologie Moléculaire et Cellulaire, Institut National de la Santé et de la Recherche Médicale U964, Illkirch, France.</nlm:affiliation></affiliation></author><author><name sortKey="Parkinson, Helen" sort="Parkinson, Helen" uniqKey="Parkinson H" first="Helen" last="Parkinson">Helen Parkinson</name><affiliation><nlm:affiliation>Samples, Phenotypes and Ontologies, European Molecular Biology Laboratory-European Bioinformatics Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Mallon, Ann Marie" sort="Mallon, Ann Marie" uniqKey="Mallon A" first="Ann-Marie" last="Mallon">Ann-Marie Mallon</name><affiliation><nlm:affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Brown, Steve D M" sort="Brown, Steve D M" uniqKey="Brown S" first="Steve D M" last="Brown">Steve D M. Brown</name><affiliation><nlm:affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:25992600</idno><idno type="pmid">25992600</idno><idno type="doi">10.1371/journal.pbio.1002151</idno><idno type="wicri:Area/PubMed/Corpus">000496</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000496</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Applying the ARRIVE Guidelines to an In Vivo Database.</title><author><name sortKey="Karp, Natasha A" sort="Karp, Natasha A" uniqKey="Karp N" first="Natasha A" last="Karp">Natasha A. Karp</name><affiliation><nlm:affiliation>Mouse Informatics Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Meehan, Terry F" sort="Meehan, Terry F" uniqKey="Meehan T" first="Terry F" last="Meehan">Terry F. Meehan</name><affiliation><nlm:affiliation>Samples, Phenotypes and Ontologies, European Molecular Biology Laboratory-European Bioinformatics Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Morgan, Hugh" sort="Morgan, Hugh" uniqKey="Morgan H" first="Hugh" last="Morgan">Hugh Morgan</name><affiliation><nlm:affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Mason, Jeremy C" sort="Mason, Jeremy C" uniqKey="Mason J" first="Jeremy C" last="Mason">Jeremy C. Mason</name><affiliation><nlm:affiliation>Samples, Phenotypes and Ontologies, European Molecular Biology Laboratory-European Bioinformatics Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Blake, Andrew" sort="Blake, Andrew" uniqKey="Blake A" first="Andrew" last="Blake">Andrew Blake</name><affiliation><nlm:affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Kurbatova, Natalja" sort="Kurbatova, Natalja" uniqKey="Kurbatova N" first="Natalja" last="Kurbatova">Natalja Kurbatova</name><affiliation><nlm:affiliation>Samples, Phenotypes and Ontologies, European Molecular Biology Laboratory-European Bioinformatics Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Smedley, Damian" sort="Smedley, Damian" uniqKey="Smedley D" first="Damian" last="Smedley">Damian Smedley</name><affiliation><nlm:affiliation>Mouse Informatics Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Jacobsen, Julius" sort="Jacobsen, Julius" uniqKey="Jacobsen J" first="Julius" last="Jacobsen">Julius Jacobsen</name><affiliation><nlm:affiliation>Mouse Informatics Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Mott, Richard F" sort="Mott, Richard F" uniqKey="Mott R" first="Richard F" last="Mott">Richard F. Mott</name><affiliation><nlm:affiliation>The Wellcome Trust Centre for Human Genetics, Oxford University, Oxford, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Iyer, Vivek" sort="Iyer, Vivek" uniqKey="Iyer V" first="Vivek" last="Iyer">Vivek Iyer</name><affiliation><nlm:affiliation>Cellular Genetics, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Matthews, Peter" sort="Matthews, Peter" uniqKey="Matthews P" first="Peter" last="Matthews">Peter Matthews</name><affiliation><nlm:affiliation>Cellular Genetics, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Melvin, David G" sort="Melvin, David G" uniqKey="Melvin D" first="David G" last="Melvin">David G. Melvin</name><affiliation><nlm:affiliation>Mouse Informatics Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Wells, Sara" sort="Wells, Sara" uniqKey="Wells S" first="Sara" last="Wells">Sara Wells</name><affiliation><nlm:affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Flenniken, Ann M" sort="Flenniken, Ann M" uniqKey="Flenniken A" first="Ann M" last="Flenniken">Ann M. Flenniken</name><affiliation><nlm:affiliation>Toronto Centre for Phenogenomics, Mount Sinai Hospital, Toronto, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Masuya, Hiroshi" sort="Masuya, Hiroshi" uniqKey="Masuya H" first="Hiroshi" last="Masuya">Hiroshi Masuya</name><affiliation><nlm:affiliation>BioResource Center, RIKEN, Tsukuba, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Wakana, Shigeharu" sort="Wakana, Shigeharu" uniqKey="Wakana S" first="Shigeharu" last="Wakana">Shigeharu Wakana</name><affiliation><nlm:affiliation>BioResource Center, RIKEN, Tsukuba, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="White, Jacqueline K" sort="White, Jacqueline K" uniqKey="White J" first="Jacqueline K" last="White">Jacqueline K. White</name><affiliation><nlm:affiliation>Mouse Genetics Project, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Lloyd, K C Kent" sort="Lloyd, K C Kent" uniqKey="Lloyd K" first="K C Kent" last="Lloyd">K C Kent Lloyd</name><affiliation><nlm:affiliation>Mouse Biology Program, University of California Davis, Davis, California, United States of America.</nlm:affiliation></affiliation></author><author><name sortKey="Reynolds, Corey L" sort="Reynolds, Corey L" uniqKey="Reynolds C" first="Corey L" last="Reynolds">Corey L. Reynolds</name><affiliation><nlm:affiliation>Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, Texas, United States of America.</nlm:affiliation></affiliation></author><author><name sortKey="Paylor, Richard" sort="Paylor, Richard" uniqKey="Paylor R" first="Richard" last="Paylor">Richard Paylor</name><affiliation><nlm:affiliation>Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America.</nlm:affiliation></affiliation></author><author><name sortKey="West, David B" sort="West, David B" uniqKey="West D" first="David B" last="West">David B. West</name><affiliation><nlm:affiliation>Genetics, Children's Hospital Oakland Research Institute, Oakland, California, United States of America.</nlm:affiliation></affiliation></author><author><name sortKey="Svenson, Karen L" sort="Svenson, Karen L" uniqKey="Svenson K" first="Karen L" last="Svenson">Karen L. Svenson</name><affiliation><nlm:affiliation>Genetics, The Jackson Laboratory, Bar Habour, Maine, United States of America.</nlm:affiliation></affiliation></author><author><name sortKey="Chesler, Elissa J" sort="Chesler, Elissa J" uniqKey="Chesler E" first="Elissa J" last="Chesler">Elissa J. Chesler</name><affiliation><nlm:affiliation>Genetics, The Jackson Laboratory, Bar Habour, Maine, United States of America.</nlm:affiliation></affiliation></author><author><name sortKey="De Angelis, Martin Hrab" sort="De Angelis, Martin Hrab" uniqKey="De Angelis M" first="Martin Hrab" last="De Angelis">Martin Hrab De Angelis</name><affiliation><nlm:affiliation>German Mouse Clinic-Institute of Experimental Genetics, Helmholtz Zentrum München, Neuherberg, Germany; Experimental Genetics-Center of Life and Food, Technische Universität München, Freising-Weihenstephan, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Tocchini Valentini, Glauco P" sort="Tocchini Valentini, Glauco P" uniqKey="Tocchini Valentini G" first="Glauco P" last="Tocchini-Valentini">Glauco P. Tocchini-Valentini</name><affiliation><nlm:affiliation>Monterotondo Mouse Clinic, CNR Institute of Cell Biology and Neurobiology, Monterotondo, Scalo, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Sorg, Tania" sort="Sorg, Tania" uniqKey="Sorg T" first="Tania" last="Sorg">Tania Sorg</name><affiliation><nlm:affiliation>PHENOMIN, Centre National de la Recherche Scientifique, Illkirch, France; Institut Clinique de la Souris, Université de Strasbourg, Illkirch, France; Institut de Génétique et de Biologie Moléculaire et Cellulaire, Institut National de la Santé et de la Recherche Médicale U964, Illkirch, France.</nlm:affiliation></affiliation></author><author><name sortKey="Herault, Yann" sort="Herault, Yann" uniqKey="Herault Y" first="Yann" last="Herault">Yann Herault</name><affiliation><nlm:affiliation>PHENOMIN, Centre National de la Recherche Scientifique, Illkirch, France; Institut Clinique de la Souris, Université de Strasbourg, Illkirch, France; Institut de Génétique et de Biologie Moléculaire et Cellulaire, Institut National de la Santé et de la Recherche Médicale U964, Illkirch, France.</nlm:affiliation></affiliation></author><author><name sortKey="Parkinson, Helen" sort="Parkinson, Helen" uniqKey="Parkinson H" first="Helen" last="Parkinson">Helen Parkinson</name><affiliation><nlm:affiliation>Samples, Phenotypes and Ontologies, European Molecular Biology Laboratory-European Bioinformatics Institute, Cambridge, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Mallon, Ann Marie" sort="Mallon, Ann Marie" uniqKey="Mallon A" first="Ann-Marie" last="Mallon">Ann-Marie Mallon</name><affiliation><nlm:affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</nlm:affiliation></affiliation></author><author><name sortKey="Brown, Steve D M" sort="Brown, Steve D M" uniqKey="Brown S" first="Steve D M" last="Brown">Steve D M. Brown</name><affiliation><nlm:affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</nlm:affiliation></affiliation></author></analytic><series><title level="j">PLoS biology</title><idno type="eISSN">1545-7885</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animal Experimentation (standards)</term><term>Animals</term><term>Databases as Topic</term><term>Guidelines as Topic</term><term>Mice</term><term>Phenotype</term></keywords><keywords scheme="MESH" qualifier="standards" xml:lang="en"><term>Animal Experimentation</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Databases as Topic</term><term>Guidelines as Topic</term><term>Mice</term><term>Phenotype</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The Animal Research: Reporting of In Vivo Experiments (ARRIVE) guidelines were developed to address the lack of reproducibility in biomedical animal studies and improve the communication of research findings. While intended to guide the preparation of peer-reviewed manuscripts, the principles of transparent reporting are also fundamental for in vivo databases. Here, we describe the benefits and challenges of applying the guidelines for the International Mouse Phenotyping Consortium (IMPC), whose goal is to produce and phenotype 20,000 knockout mouse strains in a reproducible manner across ten research centres. In addition to ensuring the transparency and reproducibility of the IMPC, the solutions to the challenges of applying the ARRIVE guidelines in the context of IMPC will provide a resource to help guide similar initiatives in the future.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25992600</PMID><DateCreated><Year>2015</Year><Month>05</Month><Day>21</Day></DateCreated><DateCompleted><Year>2016</Year><Month>04</Month><Day>12</Day></DateCompleted><DateRevised><Year>2016</Year><Month>11</Month><Day>22</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1545-7885</ISSN><JournalIssue CitedMedium="Internet"><Volume>13</Volume><Issue>5</Issue><PubDate><Year>2015</Year><Month>May</Month></PubDate></JournalIssue><Title>PLoS biology</Title><ISOAbbreviation>PLoS Biol.</ISOAbbreviation></Journal><ArticleTitle>Applying the ARRIVE Guidelines to an In Vivo Database.</ArticleTitle><Pagination><MedlinePgn>e1002151</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pbio.1002151</ELocationID><Abstract><AbstractText>The Animal Research: Reporting of In Vivo Experiments (ARRIVE) guidelines were developed to address the lack of reproducibility in biomedical animal studies and improve the communication of research findings. While intended to guide the preparation of peer-reviewed manuscripts, the principles of transparent reporting are also fundamental for in vivo databases. Here, we describe the benefits and challenges of applying the guidelines for the International Mouse Phenotyping Consortium (IMPC), whose goal is to produce and phenotype 20,000 knockout mouse strains in a reproducible manner across ten research centres. In addition to ensuring the transparency and reproducibility of the IMPC, the solutions to the challenges of applying the ARRIVE guidelines in the context of IMPC will provide a resource to help guide similar initiatives in the future.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Karp</LastName><ForeName>Natasha A</ForeName><Initials>NA</Initials><AffiliationInfo><Affiliation>Mouse Informatics Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Meehan</LastName><ForeName>Terry F</ForeName><Initials>TF</Initials><AffiliationInfo><Affiliation>Samples, Phenotypes and Ontologies, European Molecular Biology Laboratory-European Bioinformatics Institute, Cambridge, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Morgan</LastName><ForeName>Hugh</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mason</LastName><ForeName>Jeremy C</ForeName><Initials>JC</Initials><AffiliationInfo><Affiliation>Samples, Phenotypes and Ontologies, European Molecular Biology Laboratory-European Bioinformatics Institute, Cambridge, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Blake</LastName><ForeName>Andrew</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kurbatova</LastName><ForeName>Natalja</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Samples, Phenotypes and Ontologies, European Molecular Biology Laboratory-European Bioinformatics Institute, Cambridge, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Smedley</LastName><ForeName>Damian</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Mouse Informatics Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jacobsen</LastName><ForeName>Julius</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Mouse Informatics Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mott</LastName><ForeName>Richard F</ForeName><Initials>RF</Initials><AffiliationInfo><Affiliation>The Wellcome Trust Centre for Human Genetics, Oxford University, Oxford, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Iyer</LastName><ForeName>Vivek</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Cellular Genetics, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Matthews</LastName><ForeName>Peter</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Cellular Genetics, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Melvin</LastName><ForeName>David G</ForeName><Initials>DG</Initials><AffiliationInfo><Affiliation>Mouse Informatics Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wells</LastName><ForeName>Sara</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Flenniken</LastName><ForeName>Ann M</ForeName><Initials>AM</Initials><AffiliationInfo><Affiliation>Toronto Centre for Phenogenomics, Mount Sinai Hospital, Toronto, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Masuya</LastName><ForeName>Hiroshi</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>BioResource Center, RIKEN, Tsukuba, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wakana</LastName><ForeName>Shigeharu</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>BioResource Center, RIKEN, Tsukuba, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>White</LastName><ForeName>Jacqueline K</ForeName><Initials>JK</Initials><AffiliationInfo><Affiliation>Mouse Genetics Project, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lloyd</LastName><ForeName>K C Kent</ForeName><Initials>KC</Initials><AffiliationInfo><Affiliation>Mouse Biology Program, University of California Davis, Davis, California, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Reynolds</LastName><ForeName>Corey L</ForeName><Initials>CL</Initials><AffiliationInfo><Affiliation>Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, Texas, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Paylor</LastName><ForeName>Richard</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>West</LastName><ForeName>David B</ForeName><Initials>DB</Initials><AffiliationInfo><Affiliation>Genetics, Children's Hospital Oakland Research Institute, Oakland, California, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Svenson</LastName><ForeName>Karen L</ForeName><Initials>KL</Initials><AffiliationInfo><Affiliation>Genetics, The Jackson Laboratory, Bar Habour, Maine, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chesler</LastName><ForeName>Elissa J</ForeName><Initials>EJ</Initials><AffiliationInfo><Affiliation>Genetics, The Jackson Laboratory, Bar Habour, Maine, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>de Angelis</LastName><ForeName>Martin Hrabě</ForeName><Initials>MH</Initials><AffiliationInfo><Affiliation>German Mouse Clinic-Institute of Experimental Genetics, Helmholtz Zentrum München, Neuherberg, Germany; Experimental Genetics-Center of Life and Food, Technische Universität München, Freising-Weihenstephan, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tocchini-Valentini</LastName><ForeName>Glauco P</ForeName><Initials>GP</Initials><AffiliationInfo><Affiliation>Monterotondo Mouse Clinic, CNR Institute of Cell Biology and Neurobiology, Monterotondo, Scalo, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sorg</LastName><ForeName>Tania</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>PHENOMIN, Centre National de la Recherche Scientifique, Illkirch, France; Institut Clinique de la Souris, Université de Strasbourg, Illkirch, France; Institut de Génétique et de Biologie Moléculaire et Cellulaire, Institut National de la Santé et de la Recherche Médicale U964, Illkirch, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Herault</LastName><ForeName>Yann</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>PHENOMIN, Centre National de la Recherche Scientifique, Illkirch, France; Institut Clinique de la Souris, Université de Strasbourg, Illkirch, France; Institut de Génétique et de Biologie Moléculaire et Cellulaire, Institut National de la Santé et de la Recherche Médicale U964, Illkirch, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Parkinson</LastName><ForeName>Helen</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Samples, Phenotypes and Ontologies, European Molecular Biology Laboratory-European Bioinformatics Institute, Cambridge, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mallon</LastName><ForeName>Ann-Marie</ForeName><Initials>AM</Initials><AffiliationInfo><Affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Brown</LastName><ForeName>Steve D M</ForeName><Initials>SD</Initials><AffiliationInfo><Affiliation>Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>090532/Z/09/Z</GrantID><Agency>Wellcome Trust</Agency><Country>United Kingdom</Country></Grant><Grant><GrantID>U54 HG006370-01</GrantID><Acronym>HG</Acronym><Agency>NHGRI NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>083573/Z/07/Z</GrantID><Agency>Wellcome Trust</Agency><Country>United Kingdom</Country></Grant><Grant><GrantID>U54 HG006364-01</GrantID><Acronym>HG</Acronym><Agency>NHGRI NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>U54 HG006332</GrantID><Acronym>HG</Acronym><Agency>NHGRI NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>P30 CA034196</GrantID><Acronym>CA</Acronym><Agency>NCI NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>WT098051</GrantID><Agency>Wellcome Trust</Agency><Country>United Kingdom</Country></Grant><Grant><GrantID>U54 HG006364</GrantID><Acronym>HG</Acronym><Agency>NHGRI NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>U42 OD012210</GrantID><Acronym>OD</Acronym><Agency>NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>U54-HG006332</GrantID><Acronym>HG</Acronym><Agency>NHGRI NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>MC_U142684172</GrantID><Agency>Medical Research Council</Agency><Country>United Kingdom</Country></Grant><Grant><GrantID>U54-HG006348</GrantID><Acronym>HG</Acronym><Agency>NHGRI NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>U54 HG006348</GrantID><Acronym>HG</Acronym><Agency>NHGRI NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>U54 HG006370</GrantID><Acronym>HG</Acronym><Agency>NHGRI NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>U42 OD011175</GrantID><Acronym>OD</Acronym><Agency>NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>U42-OD11174</GrantID><Acronym>OD</Acronym><Agency>NIH HHS</Agency><Country>United States</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>05</Month><Day>20</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS Biol</MedlineTA><NlmUniqueID>101183755</NlmUniqueID><ISSNLinking>1544-9173</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>PLoS One. 2009;4(11):e7824</RefSource><PMID Version="1">19956596</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Acad Emerg Med. 2003 Jun;10(6):684-7</RefSource><PMID Version="1">12782533</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Nature. 2014 May 15;509(7500):282-3</RefSource><PMID 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Version="1">18273714</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D032761" MajorTopicYN="N">Animal Experimentation</DescriptorName><QualifierName UI="Q000592" MajorTopicYN="Y">standards</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019992" MajorTopicYN="Y">Databases as Topic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017408" MajorTopicYN="Y">Guidelines as Topic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D051379" MajorTopicYN="N">Mice</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="Y">Phenotype</DescriptorName></MeshHeading></MeshHeadingList><OtherID Source="NLM">PMC4439173</OtherID></MedlineCitation><PubmedData><History><PubMedPubDate 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