Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson's disease.
Identifieur interne : 000950 ( PubMed/Checkpoint ); précédent : 000949; suivant : 000951Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson's disease.
Auteurs : Claire Haegelen [Canada] ; Pierrick Coupé ; Vladimir Fonov ; Nicolas Guizard ; Pierre Jannin ; Xavier Morandi ; D Louis CollinsSource :
- International journal of computer assisted radiology and surgery [ 1861-6429 ] ; 2013.
English descriptors
- KwdEn :
- Algorithms, Basal Ganglia (pathology), Female, Humans, Image Interpretation, Computer-Assisted (methods), Magnetic Resonance Imaging (methods), Male, Middle Aged, Parkinson Disease (diagnosis), Pattern Recognition, Automated (methods), Reproducibility of Results, Subthalamic Nucleus (pathology), Subtraction Technique.
- MESH :
- diagnosis : Parkinson Disease.
- methods : Image Interpretation, Computer-Assisted, Magnetic Resonance Imaging, Pattern Recognition, Automated.
- pathology : Basal Ganglia, Subthalamic Nucleus.
- Algorithms, Female, Humans, Male, Middle Aged, Reproducibility of Results, Subtraction Technique.
Abstract
Template-based segmentation techniques have been developed to facilitate the accurate targeting of deep brain structures in patients with movement disorders. Three template-based brain MRI segmentation techniques were compared to determine the best strategy for segmenting the deep brain structures of patients with Parkinson's disease.
DOI: 10.1007/s11548-012-0675-8
PubMed: 22426551
Affiliations:
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pubmed:22426551Le document en format XML
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Claire.HAEGELEN@chu-rennes.fr</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>McConnell Brain Imaging Centre, Montreal Neurological Institute, 3801 University Street, Montreal, QC, H3A 2B4</wicri:regionArea><wicri:noRegion>H3A 2B4</wicri:noRegion></affiliation></author><author><name sortKey="Coupe, Pierrick" sort="Coupe, Pierrick" uniqKey="Coupe P" first="Pierrick" last="Coupé">Pierrick Coupé</name></author><author><name sortKey="Fonov, Vladimir" sort="Fonov, Vladimir" uniqKey="Fonov V" first="Vladimir" last="Fonov">Vladimir Fonov</name></author><author><name sortKey="Guizard, Nicolas" sort="Guizard, Nicolas" uniqKey="Guizard N" first="Nicolas" last="Guizard">Nicolas Guizard</name></author><author><name sortKey="Jannin, Pierre" sort="Jannin, Pierre" uniqKey="Jannin P" first="Pierre" last="Jannin">Pierre Jannin</name></author><author><name sortKey="Morandi, Xavier" sort="Morandi, Xavier" uniqKey="Morandi X" first="Xavier" last="Morandi">Xavier Morandi</name></author><author><name sortKey="Collins, D Louis" sort="Collins, D Louis" uniqKey="Collins D" first="D Louis" last="Collins">D Louis Collins</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2013">2013</date><idno type="RBID">pubmed:22426551</idno><idno type="pmid">22426551</idno><idno type="doi">10.1007/s11548-012-0675-8</idno><idno type="wicri:Area/PubMed/Corpus">000978</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000978</idno><idno type="wicri:Area/PubMed/Curation">000978</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000978</idno><idno type="wicri:Area/PubMed/Checkpoint">000978</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000978</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson's disease.</title><author><name sortKey="Haegelen, Claire" sort="Haegelen, Claire" uniqKey="Haegelen C" first="Claire" last="Haegelen">Claire Haegelen</name><affiliation wicri:level="1"><nlm:affiliation>McConnell Brain Imaging Centre, Montreal Neurological Institute, 3801 University Street, Montreal, QC, H3A 2B4, Canada. Claire.HAEGELEN@chu-rennes.fr</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>McConnell Brain Imaging Centre, Montreal Neurological Institute, 3801 University Street, Montreal, QC, H3A 2B4</wicri:regionArea><wicri:noRegion>H3A 2B4</wicri:noRegion></affiliation></author><author><name sortKey="Coupe, Pierrick" sort="Coupe, Pierrick" uniqKey="Coupe P" first="Pierrick" last="Coupé">Pierrick Coupé</name></author><author><name sortKey="Fonov, Vladimir" sort="Fonov, Vladimir" uniqKey="Fonov V" first="Vladimir" last="Fonov">Vladimir Fonov</name></author><author><name sortKey="Guizard, Nicolas" sort="Guizard, Nicolas" uniqKey="Guizard N" first="Nicolas" last="Guizard">Nicolas Guizard</name></author><author><name sortKey="Jannin, Pierre" sort="Jannin, Pierre" uniqKey="Jannin P" first="Pierre" last="Jannin">Pierre Jannin</name></author><author><name sortKey="Morandi, Xavier" sort="Morandi, Xavier" uniqKey="Morandi X" first="Xavier" last="Morandi">Xavier Morandi</name></author><author><name sortKey="Collins, D Louis" sort="Collins, D Louis" uniqKey="Collins D" first="D Louis" last="Collins">D Louis Collins</name></author></analytic><series><title level="j">International journal of computer assisted radiology and surgery</title><idno type="eISSN">1861-6429</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Algorithms</term><term>Basal Ganglia (pathology)</term><term>Female</term><term>Humans</term><term>Image Interpretation, Computer-Assisted (methods)</term><term>Magnetic Resonance Imaging (methods)</term><term>Male</term><term>Middle Aged</term><term>Parkinson Disease (diagnosis)</term><term>Pattern Recognition, Automated (methods)</term><term>Reproducibility of Results</term><term>Subthalamic Nucleus (pathology)</term><term>Subtraction Technique</term></keywords><keywords scheme="MESH" qualifier="diagnosis" xml:lang="en"><term>Parkinson Disease</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Image Interpretation, Computer-Assisted</term><term>Magnetic Resonance Imaging</term><term>Pattern Recognition, Automated</term></keywords><keywords scheme="MESH" qualifier="pathology" xml:lang="en"><term>Basal Ganglia</term><term>Subthalamic Nucleus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Algorithms</term><term>Female</term><term>Humans</term><term>Male</term><term>Middle Aged</term><term>Reproducibility of Results</term><term>Subtraction Technique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Template-based segmentation techniques have been developed to facilitate the accurate targeting of deep brain structures in patients with movement disorders. Three template-based brain MRI segmentation techniques were compared to determine the best strategy for segmenting the deep brain structures of patients with Parkinson's disease.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">22426551</PMID><DateCreated><Year>2013</Year><Month>01</Month><Day>03</Day></DateCreated><DateCompleted><Year>2013</Year><Month>06</Month><Day>04</Day></DateCompleted><DateRevised><Year>2017</Year><Month>02</Month><Day>20</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1861-6429</ISSN><JournalIssue CitedMedium="Internet"><Volume>8</Volume><Issue>1</Issue><PubDate><Year>2013</Year><Month>Jan</Month></PubDate></JournalIssue><Title>International journal of computer assisted radiology and surgery</Title><ISOAbbreviation>Int J Comput Assist Radiol Surg</ISOAbbreviation></Journal><ArticleTitle>Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson's disease.</ArticleTitle><Pagination><MedlinePgn>99-110</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s11548-012-0675-8</ELocationID><Abstract><AbstractText Label="PURPOSE" NlmCategory="OBJECTIVE">Template-based segmentation techniques have been developed to facilitate the accurate targeting of deep brain structures in patients with movement disorders. Three template-based brain MRI segmentation techniques were compared to determine the best strategy for segmenting the deep brain structures of patients with Parkinson's disease.</AbstractText><AbstractText Label="METHODS" NlmCategory="METHODS">T1-weighted and T2-weighted magnetic resonance (MR) image templates were created by averaging MR images of 57 patients with Parkinson's disease. Twenty-four deep brain structures were manually segmented on the templates. To validate the template-based segmentation, 14 of the 24 deep brain structures from the templates were manually segmented on 10 MR scans of Parkinson's patients as a gold standard. We compared the manual segmentations with three methods of automated segmentation: two registration-based approaches, automatic nonlinear image matching and anatomical labeling (ANIMAL) and symmetric image normalization (SyN), and one patch-label fusion technique. The automated labels were then compared with the manual labels using a Dice-kappa metric and center of gravity. A Friedman test was used to compare the Dice-kappa values and paired t tests for the center of gravity.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">The Friedman test showed a significant difference between the three methods for both thalami (p < 0.05) and not for the subthalamic nuclei. Registration with ANIMAL was better than with SyN for the left thalamus and was better than the patch-based method for the right thalamus.</AbstractText><AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">Although template-based approaches are the most used techniques to segment basal ganglia by warping onto MR images, we found that the patch-based method provided similar results and was less time-consuming. Patch-based method may be preferable for the subthalamic nucleus segmentation in patients with Parkinson's disease.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Haegelen</LastName><ForeName>Claire</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>McConnell Brain Imaging Centre, Montreal Neurological Institute, 3801 University Street, Montreal, QC, H3A 2B4, Canada. Claire.HAEGELEN@chu-rennes.fr</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Coupé</LastName><ForeName>Pierrick</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Fonov</LastName><ForeName>Vladimir</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Guizard</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Jannin</LastName><ForeName>Pierre</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Morandi</LastName><ForeName>Xavier</ForeName><Initials>X</Initials></Author><Author ValidYN="Y"><LastName>Collins</LastName><ForeName>D Louis</ForeName><Initials>DL</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2012</Year><Month>03</Month><Day>18</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Int J Comput Assist Radiol Surg</MedlineTA><NlmUniqueID>101499225</NlmUniqueID><ISSNLinking>1861-6410</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Comput Aided Surg. 2006 Sep;11(5):231-9</RefSource><PMID Version="1">17127648</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Neuroimage. 2010 Jan 1;49(1):345-54</RefSource><PMID Version="1">19682582</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Med Image Anal. 1996 Mar;1(1):35-51</RefSource><PMID Version="1">9873920</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>IEEE Trans Med Imaging. 1998 Feb;17(1):87-97</RefSource><PMID 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MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007090" MajorTopicYN="N">Image Interpretation, Computer-Assisted</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008279" MajorTopicYN="N">Magnetic Resonance Imaging</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008875" MajorTopicYN="N">Middle Aged</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010300" MajorTopicYN="N">Parkinson Disease</DescriptorName><QualifierName UI="Q000175" MajorTopicYN="Y">diagnosis</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010363" MajorTopicYN="N">Pattern Recognition, Automated</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015203" MajorTopicYN="N">Reproducibility of Results</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020531" MajorTopicYN="N">Subthalamic Nucleus</DescriptorName><QualifierName UI="Q000473" MajorTopicYN="Y">pathology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013382" MajorTopicYN="Y">Subtraction Technique</DescriptorName></MeshHeading></MeshHeadingList><OtherID Source="NLM">HALMS683934</OtherID><OtherID Source="NLM">PMC3733482</OtherID></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2011</Year><Month>09</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2012</Year><Month>02</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2012</Year><Month>3</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2012</Year><Month>3</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2013</Year><Month>6</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">22426551</ArticleId><ArticleId IdType="doi">10.1007/s11548-012-0675-8</ArticleId><ArticleId IdType="pmc">PMC3733482</ArticleId><ArticleId IdType="mid">HALMS683934</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Canada</li></country></list><tree><noCountry><name sortKey="Collins, D Louis" sort="Collins, D Louis" uniqKey="Collins D" first="D Louis" last="Collins">D Louis Collins</name><name sortKey="Coupe, Pierrick" sort="Coupe, Pierrick" uniqKey="Coupe P" first="Pierrick" last="Coupé">Pierrick Coupé</name><name sortKey="Fonov, Vladimir" sort="Fonov, Vladimir" uniqKey="Fonov V" first="Vladimir" last="Fonov">Vladimir Fonov</name><name sortKey="Guizard, Nicolas" sort="Guizard, Nicolas" uniqKey="Guizard N" first="Nicolas" last="Guizard">Nicolas Guizard</name><name sortKey="Jannin, Pierre" sort="Jannin, Pierre" uniqKey="Jannin P" first="Pierre" last="Jannin">Pierre Jannin</name><name sortKey="Morandi, Xavier" sort="Morandi, Xavier" uniqKey="Morandi X" first="Xavier" last="Morandi">Xavier Morandi</name></noCountry><country name="Canada"><noRegion><name sortKey="Haegelen, Claire" sort="Haegelen, Claire" uniqKey="Haegelen C" first="Claire" last="Haegelen">Claire Haegelen</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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