Deep brain stimulation modulates nonsense-mediated RNA decay in Parkinson’s patients leukocytes
Identifieur interne : 001510 ( Ncbi/Merge ); précédent : 001509; suivant : 001511Deep brain stimulation modulates nonsense-mediated RNA decay in Parkinson’s patients leukocytes
Auteurs : Lilach Soreq [Israël] ; Hagai Bergman [Israël] ; Zvi Israel [Israël] ; Hermona Soreq [Israël]Source :
- BMC Genomics [ 1471-2164 ] ; 2013.
English descriptors
- KwdEn :
- Alternative Splicing, Case-Control Studies, Deep Brain Stimulation, Disease Progression, Humans, Leukocytes (metabolism), Male, Models, Molecular, Nonsense Mediated mRNA Decay, Parkinson Disease (blood), Parkinson Disease (genetics), Parkinson Disease (therapy), Protein Conformation, RNA, Messenger (genetics).
- MESH :
- chemical , genetics : RNA, Messenger.
- blood : Parkinson Disease.
- genetics : Parkinson Disease.
- metabolism : Leukocytes.
- therapy : Parkinson Disease.
- Alternative Splicing, Case-Control Studies, Deep Brain Stimulation, Disease Progression, Humans, Male, Models, Molecular, Nonsense Mediated mRNA Decay, Protein Conformation.
Abstract
Nonsense-Mediated decay (NMD) selectively degrades mRNA transcripts that carry premature stop codons. NMD is often triggered by alternative splicing (AS) modifications introducing such codons. NMD plays an important regulatory role in brain neurons, but the
Here, we report exon arrays analysis of leukocyte mRNA AS events prior to and following Deep Brain Stimulation (DBS) neurosurgery, which efficiently improves the motor symptoms of Parkinson’s disease (PD), the leading movement disorder, and is increasingly applied to treat other diseases. We also analyzed publicly available exon array dataset of whole blood cells from mixed early and advanced PD patients. Our in-house exon array dataset of leukocyte transcripts was derived from advanced PD patients’ pre- and post-DBS stimulation and matched healthy control volunteers. The mixed cohort exhibited 146 AS changes in 136 transcripts compared to controls, including 9 NMD protein-level assessed events. In comparison, PD patients from our advanced cohort differed from healthy controls by 319 AS events in 280 transcripts, assessed as inducing 27 protein-level NMD events. DBS stimulation induced 254 AS events in 229 genes as compared to the pre-DBS state including 44 NMD inductions. A short, one hour electrical stimulus cessation caused 234 AS changes in 125 genes compared to ON-stimulus state, 22 of these were assessed for NMD. Functional analysis highlighted disease-induced DNA damage and inflammatory control and its reversal under ON and OFF stimulus as well as alternative splicing in all the tested states.
The study findings indicate a potential role for NMD both in PD and following electrical brain stimulation. Furthermore, our current observations entail future implications for developing therapies for PD, and for interfering with the impaired molecular mechanisms that underlie PD and other neurodegenerative and neurological disorders, as well as DBS-treatable conditions in general.
Url:
DOI: 10.1186/1471-2164-14-478
PubMed: 23865419
PubMed Central: 3723527
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<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>Nonsense-Mediated decay (NMD) selectively degrades mRNA transcripts that carry premature stop codons. NMD is often triggered by alternative splicing (AS) modifications introducing such codons. NMD plays an important regulatory role in brain neurons, but the <italic>in vivo</italic>
dynamics of AS and NMD changes in neurological diseases and under treatment were scarcely explored.</p>
</sec>
<sec><title>Results</title>
<p>Here, we report exon arrays analysis of leukocyte mRNA AS events prior to and following Deep Brain Stimulation (DBS) neurosurgery, which efficiently improves the motor symptoms of Parkinson’s disease (PD), the leading movement disorder, and is increasingly applied to treat other diseases. We also analyzed publicly available exon array dataset of whole blood cells from mixed early and advanced PD patients. Our in-house exon array dataset of leukocyte transcripts was derived from advanced PD patients’ pre- and post-DBS stimulation and matched healthy control volunteers. The mixed cohort exhibited 146 AS changes in 136 transcripts compared to controls, including 9 NMD protein-level assessed events. In comparison, PD patients from our advanced cohort differed from healthy controls by 319 AS events in 280 transcripts, assessed as inducing 27 protein-level NMD events. DBS stimulation induced 254 AS events in 229 genes as compared to the pre-DBS state including 44 NMD inductions. A short, one hour electrical stimulus cessation caused 234 AS changes in 125 genes compared to ON-stimulus state, 22 of these were assessed for NMD. Functional analysis highlighted disease-induced DNA damage and inflammatory control and its reversal under ON and OFF stimulus as well as alternative splicing in all the tested states.</p>
</sec>
<sec><title>Conclusions</title>
<p>The study findings indicate a potential role for NMD both in PD and following electrical brain stimulation. Furthermore, our current observations entail future implications for developing therapies for PD, and for interfering with the impaired molecular mechanisms that underlie PD and other neurodegenerative and neurological disorders, as well as DBS-treatable conditions in general.</p>
</sec>
</div>
</front>
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</affiliation>
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<author><name sortKey="Israel, Zvi" sort="Israel, Zvi" uniqKey="Israel Z" first="Zvi" last="Israel">Zvi Israel</name>
<affiliation wicri:level="1"><nlm:aff id="I3">Center for Functional & Restorative Neurosurgery, Department of Neurosurgery, Hadassah University Hospital, Jerusalem, Israel</nlm:aff>
<country xml:lang="fr">Israël</country>
<wicri:regionArea>Center for Functional & Restorative Neurosurgery, Department of Neurosurgery, Hadassah University Hospital, Jerusalem</wicri:regionArea>
<wicri:noRegion>Jerusalem</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Soreq, Hermona" sort="Soreq, Hermona" uniqKey="Soreq H" first="Hermona" last="Soreq">Hermona Soreq</name>
<affiliation wicri:level="1"><nlm:aff id="I2">The Edmond and Lily Safra Center for Brain Sciences, The Hebrew University, Jerusalem 91904, Israel</nlm:aff>
<country xml:lang="fr">Israël</country>
<wicri:regionArea>The Edmond and Lily Safra Center for Brain Sciences, The Hebrew University, Jerusalem 91904</wicri:regionArea>
<wicri:noRegion>Jerusalem 91904</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="I4">The Department of Biological Chemistry, The Life Sciences Institute, The Hebrew University of Jerusalem, Jerusalem, Israel</nlm:aff>
<country xml:lang="fr">Israël</country>
<wicri:regionArea>The Department of Biological Chemistry, The Life Sciences Institute, The Hebrew University of Jerusalem, Jerusalem</wicri:regionArea>
<wicri:noRegion>Jerusalem</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">BMC Genomics</title>
<idno type="eISSN">1471-2164</idno>
<imprint><date when="2013">2013</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>Nonsense-Mediated decay (NMD) selectively degrades mRNA transcripts that carry premature stop codons. NMD is often triggered by alternative splicing (AS) modifications introducing such codons. NMD plays an important regulatory role in brain neurons, but the <italic>in vivo</italic>
dynamics of AS and NMD changes in neurological diseases and under treatment were scarcely explored.</p>
</sec>
<sec><title>Results</title>
<p>Here, we report exon arrays analysis of leukocyte mRNA AS events prior to and following Deep Brain Stimulation (DBS) neurosurgery, which efficiently improves the motor symptoms of Parkinson’s disease (PD), the leading movement disorder, and is increasingly applied to treat other diseases. We also analyzed publicly available exon array dataset of whole blood cells from mixed early and advanced PD patients. Our in-house exon array dataset of leukocyte transcripts was derived from advanced PD patients’ pre- and post-DBS stimulation and matched healthy control volunteers. The mixed cohort exhibited 146 AS changes in 136 transcripts compared to controls, including 9 NMD protein-level assessed events. In comparison, PD patients from our advanced cohort differed from healthy controls by 319 AS events in 280 transcripts, assessed as inducing 27 protein-level NMD events. DBS stimulation induced 254 AS events in 229 genes as compared to the pre-DBS state including 44 NMD inductions. A short, one hour electrical stimulus cessation caused 234 AS changes in 125 genes compared to ON-stimulus state, 22 of these were assessed for NMD. Functional analysis highlighted disease-induced DNA damage and inflammatory control and its reversal under ON and OFF stimulus as well as alternative splicing in all the tested states.</p>
</sec>
<sec><title>Conclusions</title>
<p>The study findings indicate a potential role for NMD both in PD and following electrical brain stimulation. Furthermore, our current observations entail future implications for developing therapies for PD, and for interfering with the impaired molecular mechanisms that underlie PD and other neurodegenerative and neurological disorders, as well as DBS-treatable conditions in general.</p>
</sec>
</div>
</front>
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<pubmed><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Deep brain stimulation modulates nonsense-mediated RNA decay in Parkinson's patients leukocytes.</title>
<author><name sortKey="Soreq, Lilach" sort="Soreq, Lilach" uniqKey="Soreq L" first="Lilach" last="Soreq">Lilach Soreq</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Medical Neurobiology, Institute of Medical Research Israel-Canada, Hadassah Medical School, The Hebrew University, Jerusalem, Israel.</nlm:affiliation>
<country xml:lang="fr">Israël</country>
<wicri:regionArea>Department of Medical Neurobiology, Institute of Medical Research Israel-Canada, Hadassah Medical School, The Hebrew University, Jerusalem</wicri:regionArea>
<wicri:noRegion>Jerusalem</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Bergman, Hagai" sort="Bergman, Hagai" uniqKey="Bergman H" first="Hagai" last="Bergman">Hagai Bergman</name>
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<author><name sortKey="Israel, Zvi" sort="Israel, Zvi" uniqKey="Israel Z" first="Zvi" last="Israel">Zvi Israel</name>
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<author><name sortKey="Soreq, Hermona" sort="Soreq, Hermona" uniqKey="Soreq H" first="Hermona" last="Soreq">Hermona Soreq</name>
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<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2013">2013</date>
<idno type="RBID">pubmed:23865419</idno>
<idno type="pmid">23865419</idno>
<idno type="doi">10.1186/1471-2164-14-478</idno>
<idno type="wicri:Area/PubMed/Corpus">000890</idno>
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<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000890</idno>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Deep brain stimulation modulates nonsense-mediated RNA decay in Parkinson's patients leukocytes.</title>
<author><name sortKey="Soreq, Lilach" sort="Soreq, Lilach" uniqKey="Soreq L" first="Lilach" last="Soreq">Lilach Soreq</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Medical Neurobiology, Institute of Medical Research Israel-Canada, Hadassah Medical School, The Hebrew University, Jerusalem, Israel.</nlm:affiliation>
<country xml:lang="fr">Israël</country>
<wicri:regionArea>Department of Medical Neurobiology, Institute of Medical Research Israel-Canada, Hadassah Medical School, The Hebrew University, Jerusalem</wicri:regionArea>
<wicri:noRegion>Jerusalem</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Bergman, Hagai" sort="Bergman, Hagai" uniqKey="Bergman H" first="Hagai" last="Bergman">Hagai Bergman</name>
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<author><name sortKey="Israel, Zvi" sort="Israel, Zvi" uniqKey="Israel Z" first="Zvi" last="Israel">Zvi Israel</name>
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<author><name sortKey="Soreq, Hermona" sort="Soreq, Hermona" uniqKey="Soreq H" first="Hermona" last="Soreq">Hermona Soreq</name>
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<series><title level="j">BMC genomics</title>
<idno type="eISSN">1471-2164</idno>
<imprint><date when="2013" type="published">2013</date>
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</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alternative Splicing</term>
<term>Case-Control Studies</term>
<term>Deep Brain Stimulation</term>
<term>Disease Progression</term>
<term>Humans</term>
<term>Leukocytes (metabolism)</term>
<term>Male</term>
<term>Models, Molecular</term>
<term>Nonsense Mediated mRNA Decay</term>
<term>Parkinson Disease (blood)</term>
<term>Parkinson Disease (genetics)</term>
<term>Parkinson Disease (therapy)</term>
<term>Protein Conformation</term>
<term>RNA, Messenger (genetics)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Messenger</term>
</keywords>
<keywords scheme="MESH" qualifier="blood" xml:lang="en"><term>Parkinson Disease</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Parkinson Disease</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Leukocytes</term>
</keywords>
<keywords scheme="MESH" qualifier="therapy" xml:lang="en"><term>Parkinson Disease</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Alternative Splicing</term>
<term>Case-Control Studies</term>
<term>Deep Brain Stimulation</term>
<term>Disease Progression</term>
<term>Humans</term>
<term>Male</term>
<term>Models, Molecular</term>
<term>Nonsense Mediated mRNA Decay</term>
<term>Protein Conformation</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Nonsense-Mediated decay (NMD) selectively degrades mRNA transcripts that carry premature stop codons. NMD is often triggered by alternative splicing (AS) modifications introducing such codons. NMD plays an important regulatory role in brain neurons, but the in vivo dynamics of AS and NMD changes in neurological diseases and under treatment were scarcely explored.</div>
</front>
</TEI>
</pubmed>
</double>
</record>
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